Cow genome map
| Conread name: | Utr2-C0001808_O10 |
| Conread position: | 1-182 |
| Cow position: | chr23:24546833-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 1-195 |
| Cow position: | chr23:24626553-24626745 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 1-258 |
| Cow position: | chr23:25660480-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-331 |
| Cow position: | chr23:24535800-24535470 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-383 |
| Cow position: | chr23:24639713-24640095 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 1-422 |
| Cow position: | chr23:25698495-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 136, 145 |
| Conread position: | 1-454 |
| Cow position: | chr23:25626443-25626893 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 136 |
| Conread position: | 1-455 |
| Cow position: | chr23:24560645-24560191 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr23:25626107-25626561 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 283 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-265 |
| Cow position: | chr23:24546915-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 130, 119 |
| Conread position: | 3-351 |
| Cow position: | chr23:25660398-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-352 |
| Cow position: | chr23:25724048-25723700 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 3-396 |
| Cow position: | chr23:25626694-25627088 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 252, 264 |
| Conread position: | 3-420 |
| Cow position: | chr23:24560475-24560058 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 348 |
| Conread position: | 3-433 |
| Cow position: | chr23:24654112-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 335, 292 |
| Conread position: | 3-435 |
| Cow position: | chr23:25660314-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 3-445 |
| Cow position: | chr23:24547251-24546809 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-445 |
| Cow position: | chr23:24639631-24640073 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-445 |
| Cow position: | chr23:25626193-25626632 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 332 |
| Conread position: | 3-446 |
| Cow position: | chr23:25660146-25660589 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 3-451 |
| Cow position: | chr23:24626303-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 406 |
| Conread position: | 3-452 |
| Cow position: | chr23:24535966-24535517 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 406 |
| Conread position: | 3-455 |
| Cow position: | chr23:24536050-24535598 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 119 |
| Conread position: | 3-455 |
| Cow position: | chr23:24547167-24546715 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr23:24560811-24560359 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr23:24639547-24639999 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr23:25660230-25660682 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 133 |
| Conread position: | 4-186 |
| Cow position: | chr23:24522320-24522139 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 4-254 |
| Cow position: | chr23:24521982-24521731 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 4-455 |
| Cow position: | chr23:24547334-24546883 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 118 |
| Conread position: | 4-455 |
| Cow position: | chr23:25626026-25626477 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 410 |
| Conread position: | 6-241 |
| Cow position: | chr23:24522402-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-349 |
| Cow position: | chr23:24546996-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-425 |
| Cow position: | chr23:24547080-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-434 |
| Cow position: | chr23:24560556-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-434 |
| Cow position: | chr23:25626613-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 359 |
| Conread position: | 6-455 |
| Cow position: | chr23:24639298-24639747 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 6-455 |
| Cow position: | chr23:24639466-24639915 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-455 |
| Cow position: | chr23:25698574-25698125 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-332 |
| Cow position: | chr23:25698403-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 80, 97 |
| Conread position: | 9-413 |
| Cow position: | chr23:24522567-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 113 |
| Conread position: | 9-445 |
| Cow position: | chr23:24522814-24522383 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 27 |
| Conread position: | 9-455 |
| Cow position: | chr23:24560889-24560443 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-455 |
| Cow position: | chr23:25626535-25626978 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 51 |
| Conread position: | 10-455 |
| Cow position: | chr23:24522647-24522205 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 12-433 |
| Cow position: | chr23:24535873-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-455 |
| Cow position: | chr23:24560718-24560275 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-455 |
| Cow position: | chr23:24639388-24639831 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 17-351 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-445 |
| Cow position: | chr23:25698645-25698219 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 23-455 |
| Cow position: | chr23:25625961-25626393 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 106, 98 |
| Conread position: | 24-455 |
| Cow position: | chr23:24639232-24639663 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 28-422 |
| Cow position: | chr23:25724107-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 337 |
| Conread position: | 31-455 |
| Cow position: | chr23:24536106-24535682 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 52-455 |
| Cow position: | chr23:24626268-24626671 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 28 |
| Conread position: | 72-455 |
| Cow position: | chr23:24560910-24560527 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-455 |
| Cow position: | chr23:25660145-25660514 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 241 |
| Conread position: | 98-339 |
| Cow position: | chr23:24521972-24521730 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 102-444 |
| Cow position: | chr23:24654043-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-455 |
| Cow position: | chr23:25724111-25723764 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 287, 291 |
| Conread position: | 186-455 |
| Cow position: | chr23:24654043-24654312 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 217-455 |
| Cow position: | chr23:25698699-25698461 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 269-455 |
| Cow position: | chr23:24654042-24654228 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.