Cow genome map
| Conread name: | Utr2-C0001808_O10 |
| Conread position: | 1-195 |
| Cow position: | chr28:7810751-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-223 |
| Cow position: | chr28:34673683-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 131, 145 |
| Conread position: | 1-316 |
| Cow position: | chr28:33210304-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 1-330 |
| Cow position: | chr28:9299381-9299707 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 230, 183 |
| Conread position: | 1-397 |
| Cow position: | chr28:7757996-7758393 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 0 |
| Conread position: | 1-402 |
| Cow position: | chr28:34679484-34679091 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 151, 96 |
| Conread position: | 1-425 |
| Cow position: | chr28:11333893-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-432 |
| Cow position: | chr28:9289832-9290257 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 224, 51 |
| Conread position: | 1-434 |
| Cow position: | chr28:7758400-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 381, 370 |
| Conread position: | 1-434 |
| Cow position: | chr28:9253179-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-443 |
| Cow position: | chr28:9299143-9299571 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-448 |
| Cow position: | chr28:11333641-11333194 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 363, 175 |
| Conread position: | 1-449 |
| Cow position: | chr28:7758248-7758680 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 259 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 420, 67 |
| Conread position: | 1-455 |
| Cow position: | chr28:7757660-7758114 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr28:7757828-7758282 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 225 |
| Conread position: | 1-455 |
| Cow position: | chr28:7758164-7758602 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 50 |
| Conread position: | 1-455 |
| Cow position: | chr28:7810424-7810869 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 291 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1-455 |
| Cow position: | chr28:11333977-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 373 |
| Conread position: | 3-269 |
| Cow position: | chr28:33210390-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 3-317 |
| Cow position: | chr28:9290413-9290728 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 304, 54 |
| Conread position: | 3-356 |
| Cow position: | chr28:11333723-11333376 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 257, 0 |
| Conread position: | 3-361 |
| Cow position: | chr28:7810585-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 52, 34 |
| Conread position: | 3-444 |
| Cow position: | chr28:9298561-9298999 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 106 |
| Conread position: | 3-445 |
| Cow position: | chr28:34696158-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 3-455 |
| Cow position: | chr28:7757494-7757946 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr28:7757578-7758030 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr28:7757746-7758198 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 403, 394 |
| Conread position: | 3-455 |
| Cow position: | chr28:7810342-7810785 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 191 |
| Conread position: | 3-455 |
| Cow position: | chr28:9253097-9253549 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr28:9290082-9290528 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 145, 125 |
| Conread position: | 3-455 |
| Cow position: | chr28:9290166-9290612 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 44 |
| Conread position: | 3-455 |
| Cow position: | chr28:9299061-9299499 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 3-455 |
| Cow position: | chr28:34673433-34673885 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 225 |
| Conread position: | 3-455 |
| Cow position: | chr28:34696074-34696526 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 235 |
| Conread position: | 4-455 |
| Cow position: | chr28:9253014-9253465 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-455 |
| Cow position: | chr28:9298980-9299415 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 398, 14 |
| Conread position: | 4-455 |
| Cow position: | chr28:34695991-34696442 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 234 |
| Conread position: | 5-423 |
| Cow position: | chr28:7757916-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 137 |
| Conread position: | 5-455 |
| Cow position: | chr28:7757412-7757862 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-354 |
| Cow position: | chr28:9299218-9299566 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 225 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 310, 302 |
| Conread position: | 6-455 |
| Cow position: | chr28:9298814-9299247 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 285 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 8-436 |
| Cow position: | chr28:33210227-33210656 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 8-445 |
| Cow position: | chr28:11334054-11333617 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 44 |
| Conread position: | 9-444 |
| Cow position: | chr28:9290252-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 49 |
| Conread position: | 9-445 |
| Cow position: | chr28:7758324-7758760 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 354, 367 |
| Conread position: | 9-455 |
| Cow position: | chr28:7757170-7757610 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 9-455 |
| Cow position: | chr28:34679560-34679122 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 228, 172 |
| Conread position: | 11-455 |
| Cow position: | chr28:7757334-7757778 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-455 |
| Cow position: | chr28:9252938-9253381 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 131 |
| Conread position: | 16-440 |
| Cow position: | chr28:34673362-34673786 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 120, 130 |
| Conread position: | 18-455 |
| Cow position: | chr28:11334212-11333775 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 22-454 |
| Cow position: | chr28:34695841-34696273 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-455 |
| Cow position: | chr28:7810283-7810701 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 104, 111 |
| Conread position: | 57-448 |
| Cow position: | chr28:7810555-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 252 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-455 |
| Cow position: | chr28:9252748-9253129 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 125, 133 |
| Conread position: | 155-455 |
| Cow position: | chr28:34673417-34673717 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 173-455 |
| Cow position: | chr28:33210223-33210506 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 5, 56 |
Show alignments to all cow chromosomes.