Cow genome map
| Conread name: | Utr2-C0001808_O10 |
| Conread position: | 1-361 |
| Cow position: | chr7:1439883-1440242 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 154, 88 |
| Conread position: | 1-421 |
| Cow position: | chr7:11600859-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-434 |
| Cow position: | chr7:3180445-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 358 |
| Conread position: | 1-439 |
| Cow position: | chr7:42878696-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 121 |
| Conread position: | 1-440 |
| Cow position: | chr7:42878780-42878341 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 1-443 |
| Cow position: | chr7:1015015-1015457 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-443 |
| Cow position: | chr7:18390322-18390764 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-444 |
| Cow position: | chr7:8278008-8278451 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 66, 53 |
| Conread position: | 1-445 |
| Cow position: | chr7:1014349-1014787 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 375, 281 |
| Conread position: | 1-445 |
| Cow position: | chr7:42878864-42878420 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 403 |
| Conread position: | 1-445 |
| Cow position: | chr7:42879116-42878672 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 121 |
| Conread position: | 1-445 |
| Cow position: | chr7:42879200-42878756 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 121 |
| Conread position: | 1-447 |
| Cow position: | chr7:11601027-11600581 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 386 |
| Conread position: | 1-454 |
| Cow position: | chr7:3179857-3180310 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 315 |
| Conread position: | 1-455 |
| Cow position: | chr7:1014433-1014881 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 301, 188 |
| Conread position: | 1-455 |
| Cow position: | chr7:1014679-1015133 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 54 |
| Conread position: | 1-455 |
| Cow position: | chr7:1014931-1015385 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 369 |
| Conread position: | 1-455 |
| Cow position: | chr7:3179773-3180227 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 121 |
| Conread position: | 1-455 |
| Cow position: | chr7:3179941-3180395 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr7:3180025-3180479 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 153 |
| Conread position: | 1-455 |
| Cow position: | chr7:3180109-3180563 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 120 |
| Conread position: | 1-455 |
| Cow position: | chr7:3180193-3180647 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 334 |
| Conread position: | 1-455 |
| Cow position: | chr7:8277756-8278210 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 155, 139 |
| Conread position: | 1-455 |
| Cow position: | chr7:8325061-8325515 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 128, 120 |
| Conread position: | 1-455 |
| Cow position: | chr7:8325145-8325599 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 140 |
| Conread position: | 1-455 |
| Cow position: | chr7:11601111-11600657 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 50 |
| Conread position: | 1-455 |
| Cow position: | chr7:18389986-18390440 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr7:18390154-18390608 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-455 |
| Cow position: | chr7:42879032-42878578 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 302 |
| Conread position: | 2-455 |
| Cow position: | chr7:8243044-8243496 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 154, 138 |
| Conread position: | 3-220 |
| Cow position: | chr7:11434493-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 153, 142 |
| Conread position: | 3-300 |
| Cow position: | chr7:8325819-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 152, 142 |
| Conread position: | 3-320 |
| Cow position: | chr7:18390492-18390809 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 126, 118 |
| Conread position: | 3-352 |
| Cow position: | chr7:1014267-1014616 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 304, 297 |
| Conread position: | 3-436 |
| Cow position: | chr7:1014849-1015282 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 141 |
| Conread position: | 3-445 |
| Cow position: | chr7:1014765-1015207 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 225 |
| Conread position: | 3-447 |
| Cow position: | chr7:3180363-3180810 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 118 |
| Conread position: | 3-448 |
| Cow position: | chr7:1439548-1439993 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 46 |
| Conread position: | 3-448 |
| Cow position: | chr7:8325399-8325844 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 141 |
| Conread position: | 3-455 |
| Cow position: | chr7:3180279-3180731 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 248 |
| Conread position: | 3-455 |
| Cow position: | chr7:8242877-8243329 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 280 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 3-455 |
| Cow position: | chr7:8277422-8277874 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 153, 141 |
| Conread position: | 3-455 |
| Cow position: | chr7:8277842-8278294 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 287 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 3-455 |
| Cow position: | chr7:8324895-8325347 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 286 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 70, 51 |
| Conread position: | 3-455 |
| Cow position: | chr7:8325651-8326103 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 153, 137 |
| Conread position: | 3-455 |
| Cow position: | chr7:11434738-11434293 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 279 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 68, 50 |
| Conread position: | 3-455 |
| Cow position: | chr7:11600941-11600489 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 288 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 293, 287 |
| Conread position: | 3-455 |
| Cow position: | chr7:18390240-18390692 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-455 |
| Cow position: | chr7:42878946-42878494 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-234 |
| Cow position: | chr7:1438496-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-298 |
| Cow position: | chr7:1439971-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 145, 149 |
| Conread position: | 6-455 |
| Cow position: | chr7:8243383-8243832 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 6-455 |
| Cow position: | chr7:18390075-18390524 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 280 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 151, 136 |
| Conread position: | 9-440 |
| Cow position: | chr7:8243554-8243985 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 239, 244 |
| Conread position: | 9-455 |
| Cow position: | chr7:1439808-1440252 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 142, 53 |
| Conread position: | 9-455 |
| Cow position: | chr7:8324817-8325263 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 9-455 |
| Cow position: | chr7:42879276-42878830 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 137 |
| Conread position: | 10-455 |
| Cow position: | chr7:8277597-8278042 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 54, 44 |
| Conread position: | 11-445 |
| Cow position: | chr7:1438085-1438517 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 203, 110 |
| Conread position: | 11-455 |
| Cow position: | chr7:1439472-1439917 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 139, 122 |
| Conread position: | 11-455 |
| Cow position: | chr7:8324735-8325179 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 14-455 |
| Cow position: | chr7:8242804-8243245 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 15-455 |
| Cow position: | chr7:42879354-42878914 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 19-455 |
| Cow position: | chr7:1014115-1014551 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 98, 70 |
| Conread position: | 24-455 |
| Cow position: | chr7:3179712-3180143 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-445 |
| Cow position: | chr7:1438291-1438685 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-304 |
| Cow position: | chr7:11434510-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 76 |
| Conread position: | 74-448 |
| Cow position: | chr7:1439451-1439827 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 241, 130 |
| Conread position: | 74-455 |
| Cow position: | chr7:1014668-1015049 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 249 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 47, 64 |
| Conread position: | 76-455 |
| Cow position: | chr7:11601204-11600825 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 333, 296 |
| Conread position: | 232-455 |
| Cow position: | chr7:11601216-11600993 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 23 |
Show alignments to all cow chromosomes.