Non-Coding RNA Search

Cow genome map


           Conread name:
           Utr2-C0001811_G15
        

               Conread position:
               1-298
               

               Cow position:
               chr13:55765457-55765166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 48
               

               Conread position:
               4-500
               

               Cow position:
               chr13:60600213-60599727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               504
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 25
               

               Conread position:
               13-436
               

               Cow position:
               chr13:49823749-49824170 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 226
               

               Conread position:
               14-436
               

               Cow position:
               chr13:26742853-26743270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               289
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               87, 24
               

               Conread position:
               15-268
               

               Cow position:
               chr13:17223052-17223306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               86, 51
               

               Conread position:
               19-321
               

               Cow position:
               chr13:3209587-3209287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               135, 48
               

               Conread position:
               19-500
               

               Cow position:
               chr13:10845355-10845808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 46
               

               Conread position:
               20-310
               

               Cow position:
               chr13:28071611-28071895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               211
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               60, 19
               

               Conread position:
               20-467
               

               Cow position:
               chr13:19188050-19188486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 29
               

               Conread position:
               21-356
               

               Cow position:
               chr13:45073505-45073182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               181, 36
               

               Conread position:
               21-446
               

               Cow position:
               chr13:28689213-28689626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               51, 28
               

               Conread position:
               21-500
               

               Cow position:
               chr13:21275588-21276070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 9
               

               Conread position:
               22-236
               

               Cow position:
               chr13:42203762-42203975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               20, 87
               

               Conread position:
               22-499
               

               Cow position:
               chr13:32017778-32017308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               491
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 26
               

               Conread position:
               24-232
               

               Cow position:
               chr13:8682188-8682402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               30, 48
               

               Conread position:
               26-256
               

               Cow position:
               chr13:45498973-45499199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               79, 39
               

               Conread position:
               29-257
               

               Cow position:
               chr13:369379-369152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               76, 36
               

               Conread position:
               30-219
               

               Cow position:
               chr13:18814482-18814677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               74, 33
               

               Conread position:
               30-300
               

               Cow position:
               chr13:59460990-59461252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               187
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               67, 47
               

               Conread position:
               31-213
               

               Cow position:
               chr13:8229899-8230082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               74, 32
               

               Conread position:
               31-499
               

               Cow position:
               chr13:2192482-2192922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 32
               

               Conread position:
               31-499
               

               Cow position:
               chr13:12282575-12283052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               489
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 172
               

               Conread position:
               32-267
               

               Cow position:
               chr13:23975420-23975186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               20, 35
               

               Conread position:
               32-500
               

               Cow position:
               chr13:54286976-54286549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 66
               

               Conread position:
               34-500
               

               Cow position:
               chr13:15349501-15349055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               330
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               24, 61
               

               Conread position:
               35-265
               

               Cow position:
               chr13:21024730-21024963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               18, 180
               

               Conread position:
               35-285
               

               Cow position:
               chr13:53850568-53850824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               28, 46
               

               Conread position:
               35-414
               

               Cow position:
               chr13:49795785-49796143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               271
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               31, 161
               

               Conread position:
               35-470
               

               Cow position:
               chr13:47185982-47186409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 26
               

               Conread position:
               35-492
               

               Cow position:
               chr13:52057305-52057746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               314
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               10, 51
               

               Conread position:
               35-499
               

               Cow position:
               chr13:45352774-45353260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               487
               

               Alignm identity:
               372
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               36-226
               

               Cow position:
               chr13:53847371-53847181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               36, 121
               

               Conread position:
               36-288
               

               Cow position:
               chr13:30315251-30315509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               69, 29
               

               Conread position:
               38-235
               

               Cow position:
               chr13:17624066-17624271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               19, 154
               

               Conread position:
               38-389
               

               Cow position:
               chr13:13533912-13533568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               259
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               24, 113
               

               Conread position:
               38-492
               

               Cow position:
               chr13:17114630-17114173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 17
               

               Conread position:
               38-500
               

               Cow position:
               chr13:7059210-7059690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               482
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               39-269
               

               Cow position:
               chr13:24121531-24121756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               117, 7
               

               Conread position:
               39-294
               

               Cow position:
               chr13:10727109-10727372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               39-300
               

               Cow position:
               chr13:15996788-15997048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               203
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 124
               

               Conread position:
               39-300
               

               Cow position:
               chr13:47676185-47675921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               190
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               39-336
               

               Cow position:
               chr13:52459721-52459433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               211
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               263, 104
               

               Conread position:
               39-336
               

               Cow position:
               chr13:52641199-52640901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 80
               

               Conread position:
               39-362
               

               Cow position:
               chr13:4974916-4974587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               9, 187
               

               Conread position:
               39-389
               

               Cow position:
               chr13:12770440-12770090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 38
               

               Conread position:
               39-392
               

               Cow position:
               chr13:20330965-20331325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               51, 173
               

               Conread position:
               39-491
               

               Cow position:
               chr13:42860817-42860364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 110
               

               Conread position:
               39-499
               

               Cow position:
               chr13:43595355-43594901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 169
               

               Conread position:
               39-499
               

               Cow position:
               chr13:46515812-46516282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 22
               

               Conread position:
               39-499
               

               Cow position:
               chr13:51940498-51940945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               253, 73
               

               Conread position:
               39-500
               

               Cow position:
               chr13:9142033-9142499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 33
               

               Conread position:
               39-500
               

               Cow position:
               chr13:12449226-12448774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 24
               

               Conread position:
               40-226
               

               Cow position:
               chr13:17787873-17787683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               62, 31
               

               Conread position:
               40-290
               

               Cow position:
               chr13:17813221-17813475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               40-368
               

               Cow position:
               chr13:26120619-26120282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               228
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               65, 175
               

               Conread position:
               41-271
               

               Cow position:
               chr13:8393127-8392912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               41-492
               

               Cow position:
               chr13:52893905-52894351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 24
               

               Conread position:
               42-279
               

               Cow position:
               chr13:28439166-28439403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               29, 74
               

               Conread position:
               42-389
               

               Cow position:
               chr13:54128849-54128491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 90
               

               Conread position:
               42-436
               

               Cow position:
               chr13:13238334-13238724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               279
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               19, 114
               

               Conread position:
               42-462
               

               Cow position:
               chr13:49023107-49022693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 21
               

               Conread position:
               42-499
               

               Cow position:
               chr13:3143003-3143455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               292
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               122, 166
               

               Conread position:
               42-499
               

               Cow position:
               chr13:51015427-51014966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 15
               

               Conread position:
               43-226
               

               Cow position:
               chr13:21886928-21886737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               43-293
               

               Cow position:
               chr13:28536564-28536315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               44-337
               

               Cow position:
               chr13:9707989-9707696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               61, 19
               

               Conread position:
               44-428
               

               Cow position:
               chr13:21280745-21280350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 36
               

               Conread position:
               44-500
               

               Cow position:
               chr13:20880071-20879620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 125
               

               Conread position:
               45-300
               

               Cow position:
               chr13:50646873-50646621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               190
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               23, 35
               

               Conread position:
               45-455
               

               Cow position:
               chr13:9800282-9800669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               60, 17
               

               Conread position:
               46-412
               

               Cow position:
               chr13:5911130-5910773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 20
               

               Conread position:
               47-248
               

               Cow position:
               chr13:33518200-33517994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               24, 166
               

               Conread position:
               47-378
               

               Cow position:
               chr13:20137578-20137915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 29
               

               Conread position:
               47-405
               

               Cow position:
               chr13:20358123-20357777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               248
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               55, 20
               

               Conread position:
               47-431
               

               Cow position:
               chr13:2822627-2823001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               268
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               58, 84
               

               Conread position:
               47-441
               

               Cow position:
               chr13:45593683-45594055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               275
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               58, 109
               

               Conread position:
               48-236
               

               Cow position:
               chr13:10423282-10423471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               56, 117
               

               Conread position:
               48-248
               

               Cow position:
               chr13:28605633-28605428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               57, 17
               

               Conread position:
               48-252
               

               Cow position:
               chr13:48126866-48127074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               48-270
               

               Cow position:
               chr13:13797056-13796827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               48-295
               

               Cow position:
               chr13:49393186-49392934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               107, 29
               

               Conread position:
               48-300
               

               Cow position:
               chr13:41189861-41190119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               48-381
               

               Cow position:
               chr13:56035094-56034765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 14
               

               Conread position:
               48-386
               

               Cow position:
               chr13:16203426-16203767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               232
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               54, 264
               

               Conread position:
               48-414
               

               Cow position:
               chr13:17438098-17437743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               258
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               55, 24
               

               Conread position:
               48-485
               

               Cow position:
               chr13:1231405-1231851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 23
               

               Conread position:
               48-499
               

               Cow position:
               chr13:17745021-17745453 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 31
               

               Conread position:
               48-500
               

               Cow position:
               chr13:38284208-38283769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 31
               

               Conread position:
               49-219
               

               Cow position:
               chr13:242393-242568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               19, 39
               

               Conread position:
               49-226
               

               Cow position:
               chr13:43102744-43102923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               53, 16
               

               Conread position:
               49-243
               

               Cow position:
               chr13:37946627-37946432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               49-248
               

               Cow position:
               chr13:10511944-10511739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               139
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               49-260
               

               Cow position:
               chr13:21012726-21012942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               24, 194
               

               Conread position:
               49-260
               

               Cow position:
               chr13:37555107-37554900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               49-281
               

               Cow position:
               chr13:2393147-2393381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               25, 96
               

               Conread position:
               49-351
               

               Cow position:
               chr13:18127846-18127543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               201
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               55, 75
               

               Conread position:
               49-382
               

               Cow position:
               chr13:53553490-53553168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               224
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               116, 34
               

               Conread position:
               49-412
               

               Cow position:
               chr13:57448827-57449190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               56, 270
               

               Conread position:
               49-418
               

               Cow position:
               chr13:25579427-25579058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 18
               

               Conread position:
               49-419
               

               Cow position:
               chr13:14879195-14878822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 273
               

               Conread position:
               49-441
               

               Cow position:
               chr13:17497984-17498383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               275, 18
               

               Conread position:
               49-441
               

               Cow position:
               chr13:18999293-18999694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 310
               

               Conread position:
               49-447
               

               Cow position:
               chr13:13338621-13339017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 18
               

               Conread position:
               49-447
               

               Cow position:
               chr13:20088955-20088546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               277
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               56, 30
               

               Conread position:
               49-465
               

               Cow position:
               chr13:34375016-34375449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 165
               

               Conread position:
               49-465
               

               Cow position:
               chr13:39233066-39232659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 146
               

               Conread position:
               49-466
               

               Cow position:
               chr13:5758566-5758164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 20
               

               Conread position:
               49-491
               

               Cow position:
               chr13:46111732-46112173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 23
               

               Conread position:
               49-492
               

               Cow position:
               chr13:10925161-10924700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 145
               

               Conread position:
               49-492
               

               Cow position:
               chr13:40490980-40491440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 16
               

               Conread position:
               49-495
               

               Cow position:
               chr13:151734-152161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               393, 14
               

               Conread position:
               49-497
               

               Cow position:
               chr13:32282887-32283339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 42
               

               Conread position:
               49-498
               

               Cow position:
               chr13:42113777-42114234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 259
               

               Conread position:
               49-500
               

               Cow position:
               chr13:3315924-3315459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 261
               

               Conread position:
               49-500
               

               Cow position:
               chr13:7076007-7076471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 19
               

               Conread position:
               49-500
               

               Cow position:
               chr13:43479826-43480276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 14
               

               Conread position:
               49-500
               

               Cow position:
               chr13:45074146-45073720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               50-226
               

               Cow position:
               chr13:17044387-17044569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               50-256
               

               Cow position:
               chr13:23685238-23685029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               54, 22
               

               Conread position:
               50-301
               

               Cow position:
               chr13:8779017-8779257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               12, 92
               

               Conread position:
               50-392
               

               Cow position:
               chr13:4158421-4158768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 81
               

               Conread position:
               50-407
               

               Cow position:
               chr13:21136152-21135782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               255
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               7, 355
               

               Conread position:
               50-475
               

               Cow position:
               chr13:9846701-9846264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 350
               

               Conread position:
               50-489
               

               Cow position:
               chr13:57475651-57475213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 22
               

               Conread position:
               50-500
               

               Cow position:
               chr13:6079637-6079204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 13
               

               Conread position:
               50-500
               

               Cow position:
               chr13:47964409-47963986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 26
               

               Conread position:
               51-217
               

               Cow position:
               chr13:3388029-3387857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               51-224
               

               Cow position:
               chr13:14782112-14782280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               51-248
               

               Cow position:
               chr13:20789754-20789548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               54, 14
               

               Conread position:
               51-267
               

               Cow position:
               chr13:24796648-24796859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               139, 27
               

               Conread position:
               51-268
               

               Cow position:
               chr13:37030113-37030324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               51, 130
               

               Conread position:
               51-284
               

               Cow position:
               chr13:33868178-33868417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               17, 148
               

               Conread position:
               51-314
               

               Cow position:
               chr13:17611785-17611522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               54, 21
               

               Conread position:
               51-326
               

               Cow position:
               chr13:28440768-28440496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               188
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               254, 26
               

               Conread position:
               51-343
               

               Cow position:
               chr13:50601941-50601649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               53, 14
               

               Conread position:
               51-365
               

               Cow position:
               chr13:7149004-7149306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               209
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               255, 18
               

               Conread position:
               51-416
               

               Cow position:
               chr13:18994886-18995256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 185
               

               Conread position:
               51-419
               

               Cow position:
               chr13:25380712-25381092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 17
               

               Conread position:
               51-499
               

               Cow position:
               chr13:5279437-5278975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 20
               

               Conread position:
               51-499
               

               Cow position:
               chr13:6189834-6189416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               308
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               54, 28
               

               Conread position:
               51-500
               

               Cow position:
               chr13:21288323-21287875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 107
               

               Conread position:
               52-250
               

               Cow position:
               chr13:8367481-8367679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               8, 108
               

               Conread position:
               52-250
               

               Cow position:
               chr13:43811696-43811904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               53, 12
               

               Conread position:
               52-261
               

               Cow position:
               chr13:37517423-37517202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               15, 140
               

               Conread position:
               52-284
               

               Cow position:
               chr13:773121-773354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               158
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               52, 142
               

               Conread position:
               52-293
               

               Cow position:
               chr13:15144066-15143836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               52, 87
               

               Conread position:
               52-295
               

               Cow position:
               chr13:12923638-12923883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               183
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               16, 76
               

               Conread position:
               52-296
               

               Cow position:
               chr13:24666277-24666030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               5, 170
               

               Conread position:
               52-432
               

               Cow position:
               chr13:18973685-18973297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               270
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               44, 215
               

               Conread position:
               52-437
               

               Cow position:
               chr13:18696588-18696990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               277
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               53, 158
               

               Conread position:
               53-205
               

               Cow position:
               chr13:27146587-27146743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               51, 14
               

               Conread position:
               53-236
               

               Cow position:
               chr13:1347401-1347216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               53-236
               

               Cow position:
               chr13:24004359-24004182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               18, 25
               

               Conread position:
               53-248
               

               Cow position:
               chr13:53357595-53357795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               53-254
               

               Cow position:
               chr13:26960031-26959829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               52, 24
               

               Conread position:
               53-257
               

               Cow position:
               chr13:3149664-3149459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               154
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               51, 12
               

               Conread position:
               53-299
               

               Cow position:
               chr13:6183667-6183407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               53-301
               

               Cow position:
               chr13:84357-84593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               127, 55
               

               Conread position:
               53-301
               

               Cow position:
               chr13:15083428-15083674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               20, 34
               

               Conread position:
               53-305
               

               Cow position:
               chr13:50457619-50457877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               52, 26
               

               Conread position:
               53-361
               

               Cow position:
               chr13:21170292-21170604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               53-498
               

               Cow position:
               chr13:15162870-15162452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 192
               

               Conread position:
               53-500
               

               Cow position:
               chr13:12989627-12990062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               307
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               18, 53
               

               Conread position:
               53-500
               

               Cow position:
               chr13:24753660-24754099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               53-500
               

               Cow position:
               chr13:38329380-38329845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 101
               

               Conread position:
               53-500
               

               Cow position:
               chr13:60509360-60508901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 279
               

               Conread position:
               54-235
               

               Cow position:
               chr13:13503284-13503465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               51, 72
               

               Conread position:
               54-257
               

               Cow position:
               chr13:28695628-28695831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               53, 9
               

               Conread position:
               54-300
               

               Cow position:
               chr13:55080903-55081156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               20, 128
               

               Conread position:
               54-356
               

               Cow position:
               chr13:6860942-6861251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 268
               

               Conread position:
               54-379
               

               Cow position:
               chr13:27180804-27181121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 248
               

               Conread position:
               54-500
               

               Cow position:
               chr13:37069109-37069564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 18
               

               Conread position:
               54-500
               

               Cow position:
               chr13:48252201-48251777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 39
               

               Conread position:
               55-226
               

               Cow position:
               chr13:9108905-9108735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               25, 102
               

               Conread position:
               55-226
               

               Cow position:
               chr13:23478672-23478842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               50, 10
               

               Conread position:
               55-285
               

               Cow position:
               chr13:30396488-30396705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               50, 16
               

               Conread position:
               55-500
               

               Cow position:
               chr13:37985980-37985535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 248
               

               Conread position:
               56-357
               

               Cow position:
               chr13:14411662-14411956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               215
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               56-358
               

               Cow position:
               chr13:42672661-42672351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               56-408
               

               Cow position:
               chr13:15194952-15194613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               49, 83
               

               Conread position:
               57-232
               

               Cow position:
               chr13:5659994-5659821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               44, 8
               

               Conread position:
               57-234
               

               Cow position:
               chr13:19588638-19588820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               57-234
               

               Cow position:
               chr13:28081488-28081670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               57-250
               

               Cow position:
               chr13:35730912-35730715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               57-251
               

               Cow position:
               chr13:62252074-62251879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               47, 8
               

               Conread position:
               57-254
               

               Cow position:
               chr13:20368111-20367911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               57-270
               

               Cow position:
               chr13:19222444-19222658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               45, 14
               

               Conread position:
               57-300
               

               Cow position:
               chr13:7440143-7440381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               108, 60
               

               Conread position:
               57-300
               

               Cow position:
               chr13:25941490-25941250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 14
               

               Conread position:
               57-301
               

               Cow position:
               chr13:3961613-3961865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               57-301
               

               Cow position:
               chr13:11543332-11543595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               189
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               48, 14
               

               Conread position:
               57-306
               

               Cow position:
               chr13:15993153-15993406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               46, 156
               

               Conread position:
               57-311
               

               Cow position:
               chr13:40541339-40541080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               57-323
               

               Cow position:
               chr13:41157168-41157440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               201
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               47, 20
               

               Conread position:
               57-356
               

               Cow position:
               chr13:55161978-55162280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 50
               

               Conread position:
               57-362
               

               Cow position:
               chr13:18548469-18548763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               206
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               11, 202
               

               Conread position:
               57-367
               

               Cow position:
               chr13:17823180-17822871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 108
               

               Conread position:
               57-382
               

               Cow position:
               chr13:28291091-28291420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               48, 21
               

               Conread position:
               57-400
               

               Cow position:
               chr13:10220727-10221060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               48, 209
               

               Conread position:
               57-431
               

               Cow position:
               chr13:18058475-18058107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 22
               

               Conread position:
               57-432
               

               Cow position:
               chr13:25604834-25604483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               48, 20
               

               Conread position:
               57-436
               

               Cow position:
               chr13:1363455-1363841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 247
               

               Conread position:
               57-436
               

               Cow position:
               chr13:6930693-6931062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 88
               

               Conread position:
               57-436
               

               Cow position:
               chr13:17450861-17451241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               256
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               15, 271
               

               Conread position:
               57-447
               

               Cow position:
               chr13:54582646-54583034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 22
               

               Conread position:
               57-476
               

               Cow position:
               chr13:7032052-7032482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               294
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               11, 275
               

               Conread position:
               57-485
               

               Cow position:
               chr13:37775436-37775027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               291
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               49, 93
               

               Conread position:
               57-491
               

               Cow position:
               chr13:11260047-11260460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 101
               

               Conread position:
               57-491
               

               Cow position:
               chr13:14063753-14063318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 101
               

               Conread position:
               57-500
               

               Cow position:
               chr13:6616993-6616533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 323
               

               Conread position:
               57-500
               

               Cow position:
               chr13:9587812-9587368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 152
               

               Conread position:
               57-500
               

               Cow position:
               chr13:19024081-19023624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 8
               

               Conread position:
               57-501
               

               Cow position:
               chr13:12045577-12045118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 312
               

               Conread position:
               58-236
               

               Cow position:
               chr13:53619773-53619954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               47, 21
               

               Conread position:
               58-260
               

               Cow position:
               chr13:2907077-2907273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               13, 20
               

               Conread position:
               58-275
               

               Cow position:
               chr13:21246941-21246719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               166
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               58-306
               

               Cow position:
               chr13:50583047-50582800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               47, 82
               

               Conread position:
               58-326
               

               Cow position:
               chr13:55494748-55494481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               239, 97
               

               Conread position:
               58-368
               

               Cow position:
               chr13:18299165-18299485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               43, 256
               

               Conread position:
               58-453
               

               Cow position:
               chr13:20157500-20157896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               262
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               97, 241
               

               Conread position:
               58-453
               

               Cow position:
               chr13:28139353-28139729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               270
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               47, 19
               

               Conread position:
               58-480
               

               Cow position:
               chr13:19582310-19581892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 84
               

               Conread position:
               58-487
               

               Cow position:
               chr13:61977186-61976761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               304
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               45, 19
               

               Conread position:
               58-500
               

               Cow position:
               chr13:15041703-15041257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 21
               

               Conread position:
               59-271
               

               Cow position:
               chr13:53865407-53865621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               59-314
               

               Cow position:
               chr13:45130287-45130544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               14, 39
               

               Conread position:
               59-338
               

               Cow position:
               chr13:37621605-37621311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               210
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               20, 194
               

               Conread position:
               59-436
               

               Cow position:
               chr13:607491-607118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 232
               

               Conread position:
               59-492
               

               Cow position:
               chr13:25926558-25926999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 82
               

               Conread position:
               59-500
               

               Cow position:
               chr13:11820933-11821357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 18
               

               Conread position:
               59-500
               

               Cow position:
               chr13:61046978-61047421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 242
               

               Conread position:
               60-269
               

               Cow position:
               chr13:8637467-8637681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               60-281
               

               Cow position:
               chr13:52177375-52177596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 98
               

               Conread position:
               60-432
               

               Cow position:
               chr13:28552359-28552739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 115
               

               Conread position:
               60-484
               

               Cow position:
               chr13:38561703-38562144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               60-490
               

               Cow position:
               chr13:47007940-47007531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 80
               

               Conread position:
               60-500
               

               Cow position:
               chr13:25695992-25695553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 12
               

               Conread position:
               62-277
               

               Cow position:
               chr13:43788072-43787846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               169
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               62-277
               

               Cow position:
               chr13:43839911-43839685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               62-297
               

               Cow position:
               chr13:37614421-37614180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               42, 17
               

               Conread position:
               62-475
               

               Cow position:
               chr13:15195425-15195019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 16
               

               Conread position:
               62-499
               

               Cow position:
               chr13:6973937-6974374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 104
               

               Conread position:
               63-290
               

               Cow position:
               chr13:54652532-54652325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               63-415
               

               Cow position:
               chr13:15945269-15945604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               7, 15
               

               Conread position:
               63-494
               

               Cow position:
               chr13:46525651-46525233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               303
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               42, 9
               

               Conread position:
               63-500
               

               Cow position:
               chr13:45725647-45726095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 266
               

               Conread position:
               64-476
               

               Cow position:
               chr13:15991454-15991031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 101
               

               Conread position:
               64-500
               

               Cow position:
               chr13:20881144-20880712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               297
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               37, 87
               

               Conread position:
               65-271
               

               Cow position:
               chr13:17135438-17135227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               65-290
               

               Cow position:
               chr13:10522717-10522937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               37, 91
               

               Conread position:
               65-293
               

               Cow position:
               chr13:16907989-16908224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               176
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               65-300
               

               Cow position:
               chr13:13775475-13775230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               40, 238
               

               Conread position:
               65-397
               

               Cow position:
               chr13:16038505-16038183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 86
               

               Conread position:
               65-406
               

               Cow position:
               chr13:19240217-19240553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               250
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               40, 57
               

               Conread position:
               65-440
               

               Cow position:
               chr13:54389237-54388870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 7
               

               Conread position:
               65-485
               

               Cow position:
               chr13:52749685-52749288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 40
               

               Conread position:
               65-499
               

               Cow position:
               chr13:41919383-41918948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               295
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               33, 178
               

               Conread position:
               66-213
               

               Cow position:
               chr13:6996933-6997080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               39, 74
               

               Conread position:
               66-226
               

               Cow position:
               chr13:51198588-51198751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               36, 120
               

               Conread position:
               66-248
               

               Cow position:
               chr13:1339365-1339179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               39, 11
               

               Conread position:
               66-252
               

               Cow position:
               chr13:18215138-18215332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               39, 12
               

               Conread position:
               66-255
               

               Cow position:
               chr13:50714923-50715116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               9, 176
               

               Conread position:
               66-260
               

               Cow position:
               chr13:11565617-11565811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               10, 74
               

               Conread position:
               66-261
               

               Cow position:
               chr13:48370520-48370328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               91, 12
               

               Conread position:
               66-324
               

               Cow position:
               chr13:12673509-12673257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               195
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               39, 74
               

               Conread position:
               66-336
               

               Cow position:
               chr13:16020639-16020901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               195
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               35, 12
               

               Conread position:
               66-336
               

               Cow position:
               chr13:25504316-25504582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 16
               

               Conread position:
               66-347
               

               Cow position:
               chr13:51080423-51080708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               36, 59
               

               Conread position:
               66-398
               

               Cow position:
               chr13:16714489-16714150 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               13, 113
               

               Conread position:
               66-435
               

               Cow position:
               chr13:6848703-6849076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 84
               

               Conread position:
               66-499
               

               Cow position:
               chr13:44201788-44202203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 84
               

               Conread position:
               66-500
               

               Cow position:
               chr13:972118-971683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 100
               

               Conread position:
               66-500
               

               Cow position:
               chr13:18491387-18491809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 12
               

               Conread position:
               67-199
               

               Cow position:
               chr13:16138030-16138157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               67-218
               

               Cow position:
               chr13:9702236-9702392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               67-222
               

               Cow position:
               chr13:29507390-29507553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               67-232
               

               Cow position:
               chr13:9551143-9551307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               36, 89
               

               Conread position:
               67-234
               

               Cow position:
               chr13:21009606-21009787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               67-235
               

               Cow position:
               chr13:14351358-14351531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               17, 143
               

               Conread position:
               67-235
               

               Cow position:
               chr13:20854680-20854507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               38, 113
               

               Conread position:
               67-235
               

               Cow position:
               chr13:26377641-26377467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               133
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               35, 114
               

               Conread position:
               67-236
               

               Cow position:
               chr13:17979209-17979034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               67-237
               

               Cow position:
               chr13:27871551-27871724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               35, 53
               

               Conread position:
               67-239
               

               Cow position:
               chr13:22729626-22729449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               67-240
               

               Cow position:
               chr13:6951361-6951533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               40, 10
               

               Conread position:
               67-248
               

               Cow position:
               chr13:10986727-10986540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               38, 12
               

               Conread position:
               67-248
               

               Cow position:
               chr13:16476634-16476819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               67-251
               

               Cow position:
               chr13:7097366-7097548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               37, 91
               

               Conread position:
               67-252
               

               Cow position:
               chr13:57929783-57929604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               67-256
               

               Cow position:
               chr13:17845264-17845458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               67-258
               

               Cow position:
               chr13:16163369-16163554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               67-258
               

               Cow position:
               chr13:27028125-27027926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               67-268
               

               Cow position:
               chr13:6113752-6113544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               67-268
               

               Cow position:
               chr13:54627261-54627468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 144
               

               Conread position:
               67-269
               

               Cow position:
               chr13:9124708-9124907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               38, 89
               

               Conread position:
               67-283
               

               Cow position:
               chr13:40937336-40937120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               90, 144
               

               Conread position:
               67-289
               

               Cow position:
               chr13:26093392-26093625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               67-291
               

               Cow position:
               chr13:50768371-50768601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               179
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               38, 190
               

               Conread position:
               67-299
               

               Cow position:
               chr13:52934208-52934440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               89, 35
               

               Conread position:
               67-299
               

               Cow position:
               chr13:61345079-61344844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               67-300
               

               Cow position:
               chr13:7046660-7046884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               38, 80
               

               Conread position:
               67-300
               

               Cow position:
               chr13:58662023-58662257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               168
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               36, 10
               

               Conread position:
               67-305
               

               Cow position:
               chr13:48222769-48222528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               35, 52
               

               Conread position:
               67-306
               

               Cow position:
               chr13:57986154-57985918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               23, 75
               

               Conread position:
               67-313
               

               Cow position:
               chr13:54145700-54145450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               179
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               67-325
               

               Cow position:
               chr13:34873364-34873629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               196
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               67-332
               

               Cow position:
               chr13:585094-584827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 177
               

               Conread position:
               67-352
               

               Cow position:
               chr13:33962979-33962705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 99
               

               Conread position:
               67-364
               

               Cow position:
               chr13:6889519-6889829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               204
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               38, 26
               

               Conread position:
               67-364
               

               Cow position:
               chr13:11231517-11231228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               38, 169
               

               Conread position:
               67-374
               

               Cow position:
               chr13:14940577-14940891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               212
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               38, 235
               

               Conread position:
               67-389
               

               Cow position:
               chr13:28500287-28499966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               225
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 178
               

               Conread position:
               67-392
               

               Cow position:
               chr13:620469-620156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 127
               

               Conread position:
               67-399
               

               Cow position:
               chr13:14967435-14967105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               38, 164
               

               Conread position:
               67-400
               

               Cow position:
               chr13:34533148-34532818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               67-402
               

               Cow position:
               chr13:23141649-23141971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               221
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               40, 239
               

               Conread position:
               67-407
               

               Cow position:
               chr13:27550515-27550857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 253
               

               Conread position:
               67-416
               

               Cow position:
               chr13:14575995-14576334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 73
               

               Conread position:
               67-435
               

               Cow position:
               chr13:8374981-8374626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 95
               

               Conread position:
               67-436
               

               Cow position:
               chr13:17159101-17158728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 11
               

               Conread position:
               67-436
               

               Cow position:
               chr13:20579698-20580052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 41
               

               Conread position:
               67-437
               

               Cow position:
               chr13:17569318-17568951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 68
               

               Conread position:
               67-440
               

               Cow position:
               chr13:20473898-20473540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               264
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               16, 83
               

               Conread position:
               67-454
               

               Cow position:
               chr13:29831647-29831265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 92
               

               Conread position:
               67-459
               

               Cow position:
               chr13:13954616-13954213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 127
               

               Conread position:
               67-484
               

               Cow position:
               chr13:23512160-23512558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               67-489
               

               Cow position:
               chr13:59170423-59170861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 82
               

               Conread position:
               67-492
               

               Cow position:
               chr13:49804767-49805182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 98
               

               Conread position:
               67-497
               

               Cow position:
               chr13:60340583-60341026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 89
               

               Conread position:
               67-498
               

               Cow position:
               chr13:1155925-1155495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 187
               

               Conread position:
               67-499
               

               Cow position:
               chr13:8203083-8202668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               292
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               98, 12
               

               Conread position:
               67-499
               

               Cow position:
               chr13:14543914-14544336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 41
               

               Conread position:
               67-499
               

               Cow position:
               chr13:20271454-20271001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 157
               

               Conread position:
               67-499
               

               Cow position:
               chr13:56686222-56686641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 78
               

               Conread position:
               67-499
               

               Cow position:
               chr13:57002502-57002945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 170
               

               Conread position:
               67-500
               

               Cow position:
               chr13:1958805-1959224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               291
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               238, 34
               

               Conread position:
               67-500
               

               Cow position:
               chr13:12876196-12875770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 141
               

               Conread position:
               67-500
               

               Cow position:
               chr13:13088812-13089239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               67-500
               

               Cow position:
               chr13:13320577-13320991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 102
               

               Conread position:
               67-500
               

               Cow position:
               chr13:15868888-15869334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 73
               

               Conread position:
               67-500
               

               Cow position:
               chr13:17855147-17855589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 240
               

               Conread position:
               67-500
               

               Cow position:
               chr13:18851869-18852291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 11
               

               Conread position:
               67-500
               

               Cow position:
               chr13:19033335-19033761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 179
               

               Conread position:
               67-500
               

               Cow position:
               chr13:19393076-19393502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 42
               

               Conread position:
               67-500
               

               Cow position:
               chr13:23667037-23667478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 55
               

               Conread position:
               67-500
               

               Cow position:
               chr13:23961028-23960591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 39
               

               Conread position:
               67-500
               

               Cow position:
               chr13:35526414-35526002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 38
               

               Conread position:
               67-500
               

               Cow position:
               chr13:35659535-35659968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 10
               

               Conread position:
               67-500
               

               Cow position:
               chr13:58043401-58043844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 290
               

               Conread position:
               68-205
               

               Cow position:
               chr13:19182889-19182751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               106
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               37, 79
               

               Conread position:
               68-259
               

               Cow position:
               chr13:20214215-20214415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               68-277
               

               Cow position:
               chr13:2776637-2776850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               37, 158
               

               Conread position:
               68-305
               

               Cow position:
               chr13:21981189-21980957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               68-345
               

               Cow position:
               chr13:13471639-13471355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               189
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               68-347
               

               Cow position:
               chr13:11103427-11103131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               68-351
               

               Cow position:
               chr13:20314843-20314555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               37, 9
               

               Conread position:
               68-387
               

               Cow position:
               chr13:21127560-21127244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 174
               

               Conread position:
               68-443
               

               Cow position:
               chr13:9899927-9900307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 144
               

               Conread position:
               68-462
               

               Cow position:
               chr13:49503758-49503351 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               274
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               12, 207
               

               Conread position:
               68-472
               

               Cow position:
               chr13:55582974-55583386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 134
               

               Conread position:
               68-482
               

               Cow position:
               chr13:24715030-24715439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               68-491
               

               Cow position:
               chr13:43139418-43139019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 72
               

               Conread position:
               68-498
               

               Cow position:
               chr13:11060755-11061200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 243
               

               Conread position:
               68-500
               

               Cow position:
               chr13:34261016-34261447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 71
               

               Conread position:
               68-500
               

               Cow position:
               chr13:41806558-41806991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 10
               

               Conread position:
               69-202
               

               Cow position:
               chr13:43577769-43577907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               69-204
               

               Cow position:
               chr13:24292877-24292743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               108
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               68, 8
               

               Conread position:
               69-216
               

               Cow position:
               chr13:34393208-34393061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               87, 138
               

               Conread position:
               69-226
               

               Cow position:
               chr13:46391137-46391295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               115
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               88, 39
               

               Conread position:
               69-238
               

               Cow position:
               chr13:11823809-11823964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               69-244
               

               Cow position:
               chr13:43576792-43576972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               69-258
               

               Cow position:
               chr13:42302260-42302068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               36, 119
               

               Conread position:
               69-271
               

               Cow position:
               chr13:26709630-26709837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               34, 18
               

               Conread position:
               69-271
               

               Cow position:
               chr13:36345730-36345927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               74, 12
               

               Conread position:
               69-275
               

               Cow position:
               chr13:24094535-24094328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               36, 165
               

               Conread position:
               69-281
               

               Cow position:
               chr13:4790341-4790122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               69-361
               

               Cow position:
               chr13:43183026-43183323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               36, 253
               

               Conread position:
               69-383
               

               Cow position:
               chr13:46329821-46329508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               204
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               237, 78
               

               Conread position:
               69-427
               

               Cow position:
               chr13:12201321-12200949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               36, 130
               

               Conread position:
               69-432
               

               Cow position:
               chr13:20360057-20360413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 239
               

               Conread position:
               69-467
               

               Cow position:
               chr13:52055810-52055414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 9
               

               Conread position:
               69-469
               

               Cow position:
               chr13:6540519-6540129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               289
               

               Alignm E-value:
               8.00001e-41
               

               Alignm gaps (pig, cow):
               33, 74
               

               Conread position:
               69-489
               

               Cow position:
               chr13:13504488-13504039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               304
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               36, 8
               

               Conread position:
               69-490
               

               Cow position:
               chr13:22085950-22085546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 80
               

               Conread position:
               69-491
               

               Cow position:
               chr13:4552609-4553005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 9
               

               Conread position:
               69-491
               

               Cow position:
               chr13:13501828-13501413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               364, 9
               

               Conread position:
               69-492
               

               Cow position:
               chr13:2773897-2774331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 250
               

               Conread position:
               69-500
               

               Cow position:
               chr13:311214-311645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 112
               

               Conread position:
               69-500
               

               Cow position:
               chr13:16247426-16247868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 209
               

               Conread position:
               69-500
               

               Cow position:
               chr13:18166514-18166945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 89
               

               Conread position:
               69-500
               

               Cow position:
               chr13:19883252-19882820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 84
               

               Conread position:
               69-500
               

               Cow position:
               chr13:25817312-25817728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 9
               

               Conread position:
               70-236
               

               Cow position:
               chr13:42613874-42614034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               70-257
               

               Cow position:
               chr13:13527191-13527010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               90, 7
               

               Conread position:
               70-296
               

               Cow position:
               chr13:7104442-7104664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-39
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               70-390
               

               Cow position:
               chr13:15659058-15659378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 229
               

               Conread position:
               70-413
               

               Cow position:
               chr13:39826338-39826677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               35, 192
               

               Conread position:
               70-462
               

               Cow position:
               chr13:5671802-5671424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               260
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 7
               

               Conread position:
               70-500
               

               Cow position:
               chr13:51528656-51528231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               302
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               10, 45
               

               Conread position:
               71-234
               

               Cow position:
               chr13:29665801-29665969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               71-243
               

               Cow position:
               chr13:6972164-6972340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               132
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               33, 48
               

               Conread position:
               71-252
               

               Cow position:
               chr13:2233515-2233340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               126
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               71-260
               

               Cow position:
               chr13:390853-390668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               71-295
               

               Cow position:
               chr13:14795990-14796215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               33, 12
               

               Conread position:
               71-296
               

               Cow position:
               chr13:6486470-6486241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               9, 172
               

               Conread position:
               71-428
               

               Cow position:
               chr13:11321816-11321477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               189, 30
               

               Conread position:
               71-486
               

               Cow position:
               chr13:61188312-61188736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 248
               

               Conread position:
               71-489
               

               Cow position:
               chr13:19223435-19223853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 162
               

               Conread position:
               71-500
               

               Cow position:
               chr13:5263495-5263071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               71-500
               

               Cow position:
               chr13:8362963-8362531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               344
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 171
               

               Conread position:
               71-500
               

               Cow position:
               chr13:26480419-26479999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               363, 157
               

               Conread position:
               71-500
               

               Cow position:
               chr13:30650969-30651390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 231
               

               Conread position:
               71-500
               

               Cow position:
               chr13:33875456-33875877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 234
               

               Conread position:
               72-235
               

               Cow position:
               chr13:21955285-21955116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               72-251
               

               Cow position:
               chr13:28376777-28376595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               72-254
               

               Cow position:
               chr13:5092610-5092426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               30, 87
               

               Conread position:
               72-255
               

               Cow position:
               chr13:33854896-33854715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               72-261
               

               Cow position:
               chr13:19177954-19178152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               34, 190
               

               Conread position:
               72-261
               

               Cow position:
               chr13:22046225-22046033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               72-263
               

               Cow position:
               chr13:25521139-25520938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               72-275
               

               Cow position:
               chr13:30148770-30148574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               72-284
               

               Cow position:
               chr13:18093084-18092877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               142
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               72-295
               

               Cow position:
               chr13:47243766-47243546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               72-298
               

               Cow position:
               chr13:20519856-20520073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               32, 75
               

               Conread position:
               72-339
               

               Cow position:
               chr13:7149713-7149460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               9.00054e-42
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               72-341
               

               Cow position:
               chr13:38035624-38035892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               72-351
               

               Cow position:
               chr13:11434789-11434516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               84, 109
               

               Conread position:
               72-351
               

               Cow position:
               chr13:62007892-62008176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               287
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               72-412
               

               Cow position:
               chr13:1568719-1569046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 64
               

               Conread position:
               72-426
               

               Cow position:
               chr13:20288123-20288466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               33, 94
               

               Conread position:
               72-440
               

               Cow position:
               chr13:38697843-38698202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               72-447
               

               Cow position:
               chr13:25495794-25496163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               72-491
               

               Cow position:
               chr13:19022049-19022484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 329
               

               Conread position:
               72-492
               

               Cow position:
               chr13:54701965-54702397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 113
               

               Conread position:
               72-499
               

               Cow position:
               chr13:17977127-17977543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 143
               

               Conread position:
               72-500
               

               Cow position:
               chr13:9975282-9974853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 6
               

               Conread position:
               72-500
               

               Cow position:
               chr13:15621594-15622022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 140
               

               Conread position:
               72-500
               

               Cow position:
               chr13:20497428-20497867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               299
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               72-500
               

               Cow position:
               chr13:42200405-42200834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 68
               

               Conread position:
               72-501
               

               Cow position:
               chr13:12670667-12670229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 53
               

               Conread position:
               72-501
               

               Cow position:
               chr13:34281467-34281896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 6
               

               Conread position:
               73-217
               

               Cow position:
               chr13:55007984-55007841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 83
               

               Conread position:
               73-219
               

               Cow position:
               chr13:2529166-2529017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               73-222
               

               Cow position:
               chr13:15114253-15114407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               114
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               73-248
               

               Cow position:
               chr13:48373530-48373356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               23, 93
               

               Conread position:
               73-258
               

               Cow position:
               chr13:11146839-11147029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               73-270
               

               Cow position:
               chr13:20042478-20042281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               32, 152
               

               Conread position:
               73-300
               

               Cow position:
               chr13:1462506-1462283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               39, 165
               

               Conread position:
               73-302
               

               Cow position:
               chr13:24215891-24215656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               73-426
               

               Cow position:
               chr13:6663970-6663614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 166
               

               Conread position:
               73-434
               

               Cow position:
               chr13:20261548-20261181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               32, 234
               

               Conread position:
               73-500
               

               Cow position:
               chr13:9906514-9906958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 232
               

               Conread position:
               73-500
               

               Cow position:
               chr13:15193103-15192679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 175
               

               Conread position:
               73-500
               

               Cow position:
               chr13:22115461-22115919 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 378
               

               Conread position:
               73-500
               

               Cow position:
               chr13:55674424-55673990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 232
               

               Conread position:
               74-229
               

               Cow position:
               chr13:56432035-56431882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               12, 78
               

               Conread position:
               74-244
               

               Cow position:
               chr13:23399553-23399724 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               31, 65
               

               Conread position:
               74-269
               

               Cow position:
               chr13:11410495-11410697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               31, 82
               

               Conread position:
               74-279
               

               Cow position:
               chr13:17058069-17057855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               31, 182
               

               Conread position:
               74-293
               

               Cow position:
               chr13:49356262-49356042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               28, 82
               

               Conread position:
               74-296
               

               Cow position:
               chr13:6980712-6980929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               31, 70
               

               Conread position:
               74-313
               

               Cow position:
               chr13:48409155-48409402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               30, 239
               

               Conread position:
               74-335
               

               Cow position:
               chr13:33054586-33054321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               31, 99
               

               Conread position:
               74-345
               

               Cow position:
               chr13:25969792-25970052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               28, 81
               

               Conread position:
               74-431
               

               Cow position:
               chr13:44003486-44003861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 191
               

               Conread position:
               74-489
               

               Cow position:
               chr13:37593159-37592734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 31
               

               Conread position:
               74-491
               

               Cow position:
               chr13:37818958-37818551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 35
               

               Conread position:
               74-492
               

               Cow position:
               chr13:20174524-20174946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 80
               

               Conread position:
               74-498
               

               Cow position:
               chr13:16014590-16015020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 241
               

               Conread position:
               74-500
               

               Cow position:
               chr13:15289132-15288711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 66
               

               Conread position:
               74-500
               

               Cow position:
               chr13:33256284-33256711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 152
               

               Conread position:
               75-245
               

               Cow position:
               chr13:16711134-16711308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               14, 49
               

               Conread position:
               76-436
               

               Cow position:
               chr13:6442318-6441953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 60
               

               Conread position:
               77-231
               

               Cow position:
               chr13:10055206-10055367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               77-238
               

               Cow position:
               chr13:40483190-40483026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               28, 103
               

               Conread position:
               77-241
               

               Cow position:
               chr13:20520100-20520270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               77-251
               

               Cow position:
               chr13:13780966-13781145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               16, 120
               

               Conread position:
               77-295
               

               Cow position:
               chr13:8699953-8699728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               77-305
               

               Cow position:
               chr13:42640170-42640401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               35, 56
               

               Conread position:
               77-307
               

               Cow position:
               chr13:2776074-2776310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               180
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               77-336
               

               Cow position:
               chr13:20115034-20115302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               28, 237
               

               Conread position:
               77-389
               

               Cow position:
               chr13:24692748-24693053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               205
               

               Alignm E-value:
               9e-32
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               77-437
               

               Cow position:
               chr13:46043964-46044306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               246
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               28, 78
               

               Conread position:
               77-486
               

               Cow position:
               chr13:20509517-20509933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               293
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               28, 228
               

               Conread position:
               77-489
               

               Cow position:
               chr13:15872227-15872653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               287
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               25, 201
               

               Conread position:
               77-490
               

               Cow position:
               chr13:21242286-21241887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 73
               

               Conread position:
               77-499
               

               Cow position:
               chr13:10989284-10988856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 98
               

               Conread position:
               77-499
               

               Cow position:
               chr13:15257577-15257164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 145
               

               Conread position:
               77-499
               

               Cow position:
               chr13:53195485-53195078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 28
               

               Conread position:
               77-500
               

               Cow position:
               chr13:20784384-20784803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 75
               

               Conread position:
               77-500
               

               Cow position:
               chr13:60966569-60966979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 45
               

               Conread position:
               78-348
               

               Cow position:
               chr13:26100179-26100456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               27, 133
               

               Conread position:
               78-415
               

               Cow position:
               chr13:11201829-11202158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               245
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               27, 186
               

               Conread position:
               78-485
               

               Cow position:
               chr13:24230001-24230413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               78-486
               

               Cow position:
               chr13:15958413-15958822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 44
               

               Conread position:
               78-490
               

               Cow position:
               chr13:24585839-24586252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               291
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               27, 79
               

               Conread position:
               78-492
               

               Cow position:
               chr13:48597700-48598111 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 79
               

               Conread position:
               78-498
               

               Cow position:
               chr13:4665059-4664649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 44
               

               Conread position:
               78-499
               

               Cow position:
               chr13:45023432-45022994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 174
               

               Conread position:
               78-500
               

               Cow position:
               chr13:37803670-37804094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               301
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               27, 216
               

               Conread position:
               79-408
               

               Cow position:
               chr13:19278887-19279209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               237
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               24, 40
               

               Conread position:
               79-498
               

               Cow position:
               chr13:34729049-34728624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 116
               

               Conread position:
               80-323
               

               Cow position:
               chr13:52536364-52536602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               24, 54
               
UCSC Genome Browser
               Conread position:
               80-470
               

               Cow position:
               chr13:17338218-17338619 (view  custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 185
               
UCSC Genome Browser
               
               
               
Conread position: 80-492

               
               
               
Cow position: chr13:15445842-15446253 (view  custom track)

               
               
               
Alignm length: 432

               
               
               
Alignm identity: 312

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 25, 65
UCSC Genome Browser
               
               
               
Conread position: 80-492

               
               
               
Cow position: chr13:20378525-20378130 (view  custom track)

               
               
               
Alignm length: 418

               
               
               
Alignm identity: 306

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 219, 29

               
               
               Conread position:82-480
               
               
               Cow position:chr13:26848036-26847629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:83-245
               
               
               Cow position:chr13:9492572-9492730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:83-346
               
               
               Cow position:chr13:35557315-35557046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:83-500
               
               
               Cow position:chr13:59688067-59687664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:290
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:84-432
               
               
               Cow position:chr13:20217601-20217245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:84-437
               
               
               Cow position:chr13:26698700-26698349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):21, 69

               
               
               Conread position:84-498
               
               
               Cow position:chr13:38873160-38872759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 168

               
               
               Conread position:85-213
               
               
               Cow position:chr13:8423199-8423332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:85-367
               
               
               Cow position:chr13:20250699-20250987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:85-498
               
               
               Cow position:chr13:26261994-26261581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 155

               
               
               Conread position:85-500
               
               
               Cow position:chr13:37521951-37521517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 105

               
               
               Conread position:85-500
               
               
               Cow position:chr13:44626164-44626595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:87-224
               
               
               Cow position:chr13:11439224-11439089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:87-254
               
               
               Cow position:chr13:8537618-8537790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:87-257
               
               
               Cow position:chr13:52027336-52027166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 70

               
               
               Conread position:87-273
               
               
               Cow position:chr13:26109797-26109989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 151

               
               
               Conread position:87-296
               
               
               Cow position:chr13:4404334-4404541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 47

               
               
               Conread position:87-299
               
               
               Cow position:chr13:54353244-54353028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 58

               
               
               Conread position:87-300
               
               
               Cow position:chr13:58149102-58149314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 88

               
               
               Conread position:87-302
               
               
               Cow position:chr13:56958777-56958984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:87-308
               
               
               Cow position:chr13:6926312-6926538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):17, 216

               
               
               Conread position:87-339
               
               
               Cow position:chr13:18340330-18340588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:87-343
               
               
               Cow position:chr13:19174895-19174636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 174

               
               
               Conread position:87-351
               
               
               Cow position:chr13:6264598-6264859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 197

               
               
               Conread position:87-357
               
               
               Cow position:chr13:19876537-19876258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:87-400
               
               
               Cow position:chr13:49475871-49476199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 242

               
               
               Conread position:87-404
               
               
               Cow position:chr13:8667415-8667734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 158

               
               
               Conread position:87-420
               
               
               Cow position:chr13:18929325-18929662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:87-447
               
               
               Cow position:chr13:39423627-39423976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:246
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):73, 146

               
               
               Conread position:87-480
               
               
               Cow position:chr13:48165623-48165234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:275
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:87-498
               
               
               Cow position:chr13:15974418-15974823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:88-287
               
               
               Cow position:chr13:20795407-20795209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:88-362
               
               
               Cow position:chr13:7190770-7191051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 39

               
               
               Conread position:88-366
               
               
               Cow position:chr13:19779054-19778770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 210

               
               
               Conread position:88-392
               
               
               Cow position:chr13:20534701-20534986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:88-475
               
               
               Cow position:chr13:20570529-20570922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:280
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):17, 124

               
               
               Conread position:88-500
               
               
               Cow position:chr13:24155311-24155756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 365

               
               
               Conread position:89-300
               
               
               Cow position:chr13:18615173-18615398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:94-264
               
               
               Cow position:chr13:6976033-6975867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:94-285
               
               
               Cow position:chr13:38703068-38702877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):146, 14

               
               
               Conread position:96-285
               
               
               Cow position:chr13:37751258-37751068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:101-254
               
               
               Cow position:chr13:1037454-1037607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:101-336
               
               
               Cow position:chr13:26720972-26720735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:101-354
               
               
               Cow position:chr13:23214831-23215085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 207

               
               
               Conread position:101-355
               
               
               Cow position:chr13:5906821-5906569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 165

               
               
               Conread position:101-500
               
               
               Cow position:chr13:17004783-17004377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:101-500
               
               
               Cow position:chr13:20606304-20605904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 256

               
               
               Conread position:101-500
               
               
               Cow position:chr13:38012156-38012576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 36

               
               
               Conread position:102-372
               
               
               Cow position:chr13:18681101-18681373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 245

               
               
               Conread position:102-467
               
               
               Cow position:chr13:23651258-23651614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:250
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):56, 80

               
               
               Conread position:103-492
               
               
               Cow position:chr13:20666567-20666179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 60

               
               
               Conread position:103-499
               
               
               Cow position:chr13:23478847-23479243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 221

               
               
               Conread position:105-500
               
               
               Cow position:chr13:43919445-43919040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 191

               
               
               Conread position:106-276
               
               
               Cow position:chr13:47227547-47227369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:106-492
               
               
               Cow position:chr13:20814452-20814073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):59, 185

               
               
               Conread position:107-258
               
               
               Cow position:chr13:17716695-17716542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:107-499
               
               
               Cow position:chr13:52228275-52227886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 46

               
               
               Conread position:108-248
               
               
               Cow position:chr13:20876095-20875955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:109-492
               
               
               Cow position:chr13:25547761-25547386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 193

               
               
               Conread position:109-500
               
               
               Cow position:chr13:9246556-9246929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 48

               
               
               Conread position:122-278
               
               
               Cow position:chr13:37980921-37980766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:122-332
               
               
               Cow position:chr13:20288486-20288699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):97, 41

               
               
               Conread position:122-381
               
               
               Cow position:chr13:50751222-50750960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:124-308
               
               
               Cow position:chr13:19750553-19750737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):97, 91

               
               
               Conread position:125-342
               
               
               Cow position:chr13:37503745-37503526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:178
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:126-336
               
               
               Cow position:chr13:17350196-17350402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):173, 18

               
               
               Conread position:126-368
               
               
               Cow position:chr13:19117584-19117835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):173, 64

               
               
               Conread position:126-393
               
               
               Cow position:chr13:13297519-13297780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):174, 72

               
               
               Conread position:126-492
               
               
               Cow position:chr13:46324950-46324583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:126-500
               
               
               Cow position:chr13:11096023-11096387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 37

               
               
               Conread position:128-324
               
               
               Cow position:chr13:9117724-9117533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 61

               
               
               Conread position:128-480
               
               
               Cow position:chr13:39367802-39368150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 23

               
               
               Conread position:128-499
               
               
               Cow position:chr13:60430237-60429864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:129-400
               
               
               Cow position:chr13:19320373-19320646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 265

               
               
               Conread position:130-287
               
               
               Cow position:chr13:22761739-22761582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:130-300
               
               
               Cow position:chr13:51814086-51813922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:130-492
               
               
               Cow position:chr13:20684285-20683915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:251
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:130-500
               
               
               Cow position:chr13:18172182-18172555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 32

               
               
               Conread position:130-500
               
               
               Cow position:chr13:23856055-23856430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 132

               
               
               Conread position:130-500
               
               
               Cow position:chr13:42229159-42229543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 32

               
               
               Conread position:130-500
               
               
               Cow position:chr13:56148365-56148755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 170

               
               
               Conread position:130-500
               
               
               Cow position:chr13:56160602-56160212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 170

               
               
               Conread position:131-319
               
               
               Cow position:chr13:52569160-52568970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:131-338
               
               
               Cow position:chr13:53788265-53788054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:131-343
               
               
               Cow position:chr13:8659901-8660103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):123, 75

               
               
               Conread position:131-393
               
               
               Cow position:chr13:49457528-49457777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:131-419
               
               
               Cow position:chr13:2803312-2803598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:131-426
               
               
               Cow position:chr13:22075514-22075809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:131-489
               
               
               Cow position:chr13:14717495-14717133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:131-491
               
               
               Cow position:chr13:13578191-13577823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):14, 197

               
               
               Conread position:131-499
               
               
               Cow position:chr13:10932399-10932766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:256
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:131-500
               
               
               Cow position:chr13:7663575-7663215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:131-500
               
               
               Cow position:chr13:16343536-16343901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):14, 96

               
               
               Conread position:131-500
               
               
               Cow position:chr13:23270365-23269998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:131-500
               
               
               Cow position:chr13:25435280-25434914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:131-500
               
               
               Cow position:chr13:34995486-34995111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:263
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):14, 213

               
               
               Conread position:131-500
               
               
               Cow position:chr13:49847769-49848133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):14, 23

               
               
               Conread position:131-501
               
               
               Cow position:chr13:23265576-23265945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:132-343
               
               
               Cow position:chr13:48554210-48554429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:132-368
               
               
               Cow position:chr13:19892388-19892149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 82

               
               
               Conread position:133-390
               
               
               Cow position:chr13:55727751-55728003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:133-418
               
               
               Cow position:chr13:11591596-11591875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):13, 94

               
               
               Conread position:133-447
               
               
               Cow position:chr13:5082496-5082807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 103

               
               
               Conread position:133-491
               
               
               Cow position:chr13:20679186-20679551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 169

               
               
               Conread position:133-501
               
               
               Cow position:chr13:1558668-1558316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 21

               
               
               Conread position:134-436
               
               
               Cow position:chr13:43829093-43829399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 22

               
               
               Conread position:134-499
               
               
               Cow position:chr13:20706355-20705988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 28

               
               
               Conread position:135-458
               
               
               Cow position:chr13:4420179-4420520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:136-277
               
               
               Cow position:chr13:9884384-9884526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:136-282
               
               
               Cow position:chr13:21294925-21295071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:136-291
               
               
               Cow position:chr13:39398500-39398658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:136-299
               
               
               Cow position:chr13:26889072-26889235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 40

               
               
               Conread position:136-333
               
               
               Cow position:chr13:43893474-43893276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:136-357
               
               
               Cow position:chr13:5005854-5006062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):193, 20

               
               
               Conread position:136-371
               
               
               Cow position:chr13:17837801-17838034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):214, 20

               
               
               Conread position:136-420
               
               
               Cow position:chr13:6389242-6389511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):21, 92

               
               
               Conread position:136-432
               
               
               Cow position:chr13:37640440-37640729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 33

               
               
               Conread position:136-472
               
               
               Cow position:chr13:2404612-2404930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):285, 41

               
               
               Conread position:136-474
               
               
               Cow position:chr13:14771302-14771650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:136-484
               
               
               Cow position:chr13:26369372-26369725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 87

               
               
               Conread position:136-486
               
               
               Cow position:chr13:547345-547689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:241
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):306, 56

               
               
               Conread position:136-486
               
               
               Cow position:chr13:61990474-61990133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 55

               
               
               Conread position:136-491
               
               
               Cow position:chr13:17439918-17439560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 101

               
               
               Conread position:136-498
               
               
               Cow position:chr13:23167251-23166883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 258

               
               
               Conread position:136-499
               
               
               Cow position:chr13:12925629-12926005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 28

               
               
               Conread position:136-500
               
               
               Cow position:chr13:2413881-2414241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:136-500
               
               
               Cow position:chr13:13765639-13765983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 82

               
               
               Conread position:136-500
               
               
               Cow position:chr13:17799927-17800287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 82

               
               
               Conread position:136-500
               
               
               Cow position:chr13:17971179-17970819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 76

               
               
               Conread position:136-500
               
               
               Cow position:chr13:36771571-36771210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 58

               
               
               Conread position:136-500
               
               
               Cow position:chr13:37381651-37382025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 167

               
               
               Conread position:136-500
               
               
               Cow position:chr13:52586188-52585805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 260

               
               
               Conread position:137-487
               
               
               Cow position:chr13:15282083-15281734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 19

               
               
               Conread position:137-492
               
               
               Cow position:chr13:51822021-51821685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):296, 26

               
               
               Conread position:138-269
               
               
               Cow position:chr13:6608530-6608399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:138-391
               
               
               Cow position:chr13:185380-185634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):16, 189

               
               
               Conread position:138-428
               
               
               Cow position:chr13:51116171-51115889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):163, 28

               
               
               Conread position:138-433
               
               
               Cow position:chr13:11381870-11381578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:200
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):169, 12

               
               
               Conread position:138-468
               
               
               Cow position:chr13:11643789-11644116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 205

               
               
               Conread position:138-499
               
               
               Cow position:chr13:12547054-12546691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 25

               
               
               Conread position:139-476
               
               
               Cow position:chr13:21283851-21283515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 96

               
               
               Conread position:139-495
               
               
               Cow position:chr13:46181650-46181999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 40

               
               
               Conread position:139-500
               
               
               Cow position:chr13:1043107-1042741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 23

               
               
               Conread position:139-500
               
               
               Cow position:chr13:43869259-43868903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 31

               
               
               Conread position:139-500
               
               
               Cow position:chr13:51901437-51901827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:140-431
               
               
               Cow position:chr13:49520969-49520680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 118

               
               
               Conread position:140-499
               
               
               Cow position:chr13:60973936-60974292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 22

               
               
               Conread position:142-337
               
               
               Cow position:chr13:8232859-8233045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:142-496
               
               
               Cow position:chr13:54094665-54095017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 231

               
               
               Conread position:143-282
               
               
               Cow position:chr13:17464459-17464599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:144-349
               
               
               Cow position:chr13:24110338-24110548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:144-457
               
               
               Cow position:chr13:46430446-46430132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 33

               
               
               Conread position:144-500
               
               
               Cow position:chr13:46312154-46311821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:145-348
               
               
               Cow position:chr13:25428363-25428167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:146-460
               
               
               Cow position:chr13:25537483-25537804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 252

               
               
               Conread position:148-331
               
               
               Cow position:chr13:51857026-51856842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 153

               
               
               Conread position:149-492
               
               
               Cow position:chr13:20816185-20816520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 141

               
               
               Conread position:150-291
               
               
               Cow position:chr13:36666410-36666269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:150-330
               
               
               Cow position:chr13:6342226-6342045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:150-378
               
               
               Cow position:chr13:3211413-3211642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:150-388
               
               
               Cow position:chr13:3989068-3989304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):158, 16

               
               
               Conread position:150-462
               
               
               Cow position:chr13:20231324-20231023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 13

               
               
               Conread position:150-490
               
               
               Cow position:chr13:39952550-39952207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:243
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):148, 60

               
               
               Conread position:150-500
               
               
               Cow position:chr13:13176513-13176864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 241

               
               
               Conread position:150-500
               
               
               Cow position:chr13:43185016-43184658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:150-500
               
               
               Cow position:chr13:53566465-53566812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:252
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):159, 90

               
               
               Conread position:151-498
               
               
               Cow position:chr13:10929123-10928777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):283, 87

               
               
               Conread position:151-499
               
               
               Cow position:chr13:9644015-9643667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 24

               
               
               Conread position:151-499
               
               
               Cow position:chr13:43762034-43762379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 19

               
               
               Conread position:153-500
               
               
               Cow position:chr13:11460500-11460840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):283, 150

               
               
               Conread position:153-500
               
               
               Cow position:chr13:28683229-28683574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 186

               
               
               Conread position:155-434
               
               
               Cow position:chr13:8555334-8555608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 28

               
               
               Conread position:155-493
               
               
               Cow position:chr13:5713184-5713502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:155-497
               
               
               Cow position:chr13:31813744-31814079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 134

               
               
               Conread position:156-313
               
               
               Cow position:chr13:25450615-25450459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:156-361
               
               
               Cow position:chr13:827115-827316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:156-364
               
               
               Cow position:chr13:20868881-20868679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:156-499
               
               
               Cow position:chr13:20839436-20839781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 142

               
               
               Conread position:156-500
               
               
               Cow position:chr13:52284686-52285031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 27

               
               
               Conread position:157-317
               
               
               Cow position:chr13:32657249-32657410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):56, 127

               
               
               Conread position:157-489
               
               
               Cow position:chr13:17886389-17886705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):143, 55

               
               
               Conread position:157-492
               
               
               Cow position:chr13:37484408-37484063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 187

               
               
               Conread position:157-492
               
               
               Cow position:chr13:43194040-43194382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 195

               
               
               Conread position:157-500
               
               
               Cow position:chr13:3016302-3015953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):197, 51

               
               
               Conread position:157-500
               
               
               Cow position:chr13:8839123-8838779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:157-500
               
               
               Cow position:chr13:12206920-12207258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 9

               
               
               Conread position:157-500
               
               
               Cow position:chr13:32717992-32717660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):276, 20

               
               
               Conread position:158-287
               
               
               Cow position:chr13:43794433-43794555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:158-377
               
               
               Cow position:chr13:17110099-17110309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:158-380
               
               
               Cow position:chr13:53330144-53330364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 148

               
               
               Conread position:158-436
               
               
               Cow position:chr13:20180288-20180564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):141, 19

               
               
               Conread position:158-465
               
               
               Cow position:chr13:9265954-9265654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 12

               
               
               Conread position:158-489
               
               
               Cow position:chr13:20466413-20466088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):142, 104

               
               
               Conread position:158-495
               
               
               Cow position:chr13:21176447-21176113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 33

               
               
               Conread position:158-497
               
               
               Cow position:chr13:37981872-37981540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 75

               
               
               Conread position:158-500
               
               
               Cow position:chr13:12614125-12614475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 72

               
               
               Conread position:158-500
               
               
               Cow position:chr13:40722835-40722495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 145

               
               
               Conread position:158-500
               
               
               Cow position:chr13:48037495-48037835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):284, 79

               
               
               Conread position:158-500
               
               
               Cow position:chr13:55316325-55315974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 239

               
               
               Conread position:159-360
               
               
               Cow position:chr13:17563613-17563809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:159-423
               
               
               Cow position:chr13:12745546-12745805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:159-498
               
               
               Cow position:chr13:37947078-37946758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):139, 62

               
               
               Conread position:160-299
               
               
               Cow position:chr13:34018804-34018943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:160-316
               
               
               Cow position:chr13:4588739-4588897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 54

               
               
               Conread position:160-432
               
               
               Cow position:chr13:17966335-17966066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:160-500
               
               
               Cow position:chr13:38278273-38277922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:160-501
               
               
               Cow position:chr13:13465892-13465574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 86

               
               
               Conread position:160-501
               
               
               Cow position:chr13:56155277-56154945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):109, 77

               
               
               Conread position:161-489
               
               
               Cow position:chr13:62247012-62247335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):107, 44

               
               
               Conread position:162-482
               
               
               Cow position:chr13:8652567-8652240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 241

               
               
               Conread position:162-500
               
               
               Cow position:chr13:8609671-8609332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 71

               
               
               Conread position:162-500
               
               
               Cow position:chr13:32950116-32949788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):227, 139

               
               
               Conread position:163-391
               
               
               Cow position:chr13:18005550-18005776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):119, 99

               
               
               Conread position:163-402
               
               
               Cow position:chr13:47322533-47322291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):138, 232

               
               
               Conread position:163-489
               
               
               Cow position:chr13:9593383-9593711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 20

               
               
               Conread position:163-490
               
               
               Cow position:chr13:6153906-6153574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):264, 15

               
               
               Conread position:163-500
               
               
               Cow position:chr13:4867094-4866766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:253
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):84, 14

               
               
               Conread position:163-500
               
               
               Cow position:chr13:32657923-32657591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 119

               
               
               Conread position:164-436
               
               
               Cow position:chr13:47188316-47188590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 13

               
               
               Conread position:164-486
               
               
               Cow position:chr13:38033555-38033883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:225
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:164-489
               
               
               Cow position:chr13:6759911-6759586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:225
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):136, 48

               
               
               Conread position:164-500
               
               
               Cow position:chr13:8524745-8524407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 210

               
               
               Conread position:164-500
               
               
               Cow position:chr13:18989601-18989920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 13

               
               
               Conread position:165-450
               
               
               Cow position:chr13:15902903-15903182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):274, 137

               
               
               Conread position:166-299
               
               
               Cow position:chr13:18516926-18517058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:166-315
               
               
               Cow position:chr13:3125681-3125822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:166-346
               
               
               Cow position:chr13:18181895-18181714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:166-403
               
               
               Cow position:chr13:56677895-56678129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):142, 57

               
               
               Conread position:166-491
               
               
               Cow position:chr13:18835084-18835392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):116, 75

               
               
               Conread position:166-492
               
               
               Cow position:chr13:20562873-20563204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 226

               
               
               Conread position:166-500
               
               
               Cow position:chr13:46736095-46736416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:167-485
               
               
               Cow position:chr13:15529156-15528828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 227

               
               
               Conread position:167-500
               
               
               Cow position:chr13:6061127-6060792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 163

               
               
               Conread position:168-500
               
               
               Cow position:chr13:46458504-46458837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:231
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 42

               
               
               Conread position:169-486
               
               
               Cow position:chr13:15166701-15167024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):146, 66

               
               
               Conread position:170-500
               
               
               Cow position:chr13:15885139-15884798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 222

               
               
               Conread position:171-463
               
               
               Cow position:chr13:15110199-15110502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 224

               
               
               Conread position:171-501
               
               
               Cow position:chr13:17622173-17622500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 128

               
               
               Conread position:172-409
               
               
               Cow position:chr13:6890674-6890918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 8

               
               
               Conread position:172-500
               
               
               Cow position:chr13:20650101-20649768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:173-373
               
               
               Cow position:chr13:7998239-7998438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):130, 78

               
               
               Conread position:173-500
               
               
               Cow position:chr13:34035254-34035583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):111, 68

               
               
               Conread position:174-472
               
               
               Cow position:chr13:9302490-9302187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):112, 143

               
               
               Conread position:174-472
               
               
               Cow position:chr13:52969837-52969534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):236, 124

               
               
               Conread position:174-492
               
               
               Cow position:chr13:25531902-25531581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 76

               
               
               Conread position:175-453
               
               
               Cow position:chr13:62600896-62601169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:175-470
               
               
               Cow position:chr13:14783008-14783289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:177-500
               
               
               Cow position:chr13:8201592-8201272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 73

               
               
               Conread position:178-302
               
               
               Cow position:chr13:15739585-15739705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:180-343
               
               
               Cow position:chr13:19183762-19183922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:181-482
               
               
               Cow position:chr13:27314030-27314333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:193
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:181-499
               
               
               Cow position:chr13:32535552-32535869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):121, 107

               
               
               Conread position:183-499
               
               
               Cow position:chr13:52879299-52879626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 140

               
               
               Conread position:184-301
               
               
               Cow position:chr13:40493821-40493936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:184-334
               
               
               Cow position:chr13:60393682-60393830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:184-392
               
               
               Cow position:chr13:60389590-60389383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):149, 117

               
               
               Conread position:184-430
               
               
               Cow position:chr13:48375735-48375504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):127, 75

               
               
               Conread position:184-499
               
               
               Cow position:chr13:36353059-36352756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):97, 152

               
               
               Conread position:185-379
               
               
               Cow position:chr13:16187997-16187806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:185-500
               
               
               Cow position:chr13:9664958-9665290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:185-500
               
               
               Cow position:chr13:18243761-18244071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:186-412
               
               
               Cow position:chr13:50713110-50713325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:189-500
               
               
               Cow position:chr13:40651837-40652148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 132

               
               
               Conread position:193-500
               
               
               Cow position:chr13:4463919-4464222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 45

               
               
               Conread position:194-486
               
               
               Cow position:chr13:11955209-11954912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 111

               
               
               Conread position:194-499
               
               
               Cow position:chr13:15233834-15234126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):236, 108

               
               
               Conread position:194-500
               
               
               Cow position:chr13:17613248-17613561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:195-492
               
               
               Cow position:chr13:34941741-34941449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 110

               
               
               Conread position:199-447
               
               
               Cow position:chr13:49507937-49507692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):114, 104

               
               
               Conread position:205-500
               
               
               Cow position:chr13:60329678-60329965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:206
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):158, 18

               
               
               Conread position:207-499
               
               
               Cow position:chr13:6835874-6835596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:208-486
               
               
               Cow position:chr13:21627964-21627683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:208-500
               
               
               Cow position:chr13:61166528-61166243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 26

               
               
               Conread position:209-499
               
               
               Cow position:chr13:42092506-42092228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):211, 32

               
               
               Conread position:210-500
               
               
               Cow position:chr13:21039675-21039383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 27

               
               
               Conread position:215-377
               
               
               Cow position:chr13:15964245-15964408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 22

               
               
               Conread position:215-499
               
               
               Cow position:chr13:53536379-53536091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):98, 68

               
               
               Conread position:215-500
               
               
               Cow position:chr13:24376422-24376705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):86, 138

               
               
               Conread position:217-383
               
               
               Cow position:chr13:22227790-22227625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):88, 68

               
               
               Conread position:218-437
               
               
               Cow position:chr13:626489-626711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):145, 103

               
               
               Conread position:221-439
               
               
               Cow position:chr13:20128601-20128815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):152, 81

               
               
               Conread position:221-466
               
               
               Cow position:chr13:56605543-56605289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 113

               
               
               Conread position:221-499
               
               
               Cow position:chr13:2463300-2463015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:221-500
               
               
               Cow position:chr13:60487525-60487241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):144, 76

               
               
               Conread position:222-499
               
               
               Cow position:chr13:16024525-16024803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 169

               
               
               Conread position:223-491
               
               
               Cow position:chr13:16834140-16833872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:198
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):13, 82

               
               
               Conread position:224-372
               
               
               Cow position:chr13:10040602-10040450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:224-437
               
               
               Cow position:chr13:10099050-10098842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):205, 64

               
               
               Conread position:228-500
               
               
               Cow position:chr13:13306034-13306321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 62

               
               
               Conread position:231-500
               
               
               Cow position:chr13:30693659-30693916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):183, 67

               
               
               Conread position:231-500
               
               
               Cow position:chr13:37521431-37521165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 17

               
               
               Conread position:232-432
               
               
               Cow position:chr13:14870478-14870672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:234-497
               
               
               Cow position:chr13:1779777-1780045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 68

               
               
               Conread position:234-500
               
               
               Cow position:chr13:16269883-16270150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):152, 68

               
               
               Conread position:235-500
               
               
               Cow position:chr13:5658777-5658515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):197, 67

               
               
               Conread position:237-461
               
               
               Cow position:chr13:36345923-36346147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):119, 32

               
               
               Conread position:237-500
               
               
               Cow position:chr13:1011283-1011547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):65, 13

               
               
               Conread position:237-500
               
               
               Cow position:chr13:19178223-19178491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:238-500
               
               
               Cow position:chr13:30026061-30026327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:240-425
               
               
               Cow position:chr13:29958633-29958815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 47

               
               
               Conread position:240-448
               
               
               Cow position:chr13:37979209-37979018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:240-474
               
               
               Cow position:chr13:26901159-26901401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 52

               
               
               Conread position:240-500
               
               
               Cow position:chr13:20682903-20683161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):151, 58

               
               
               Conread position:241-380
               
               
               Cow position:chr13:16163829-16163971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:242-431
               
               
               Cow position:chr13:48372949-48372776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:242-436
               
               
               Cow position:chr13:53070209-53070023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:242-455
               
               
               Cow position:chr13:7789963-7790184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):56, 149

               
               
               Conread position:243-497
               
               
               Cow position:chr13:21155537-21155277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 62

               
               
               Conread position:244-374
               
               
               Cow position:chr13:29802803-29802932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:244-378
               
               
               Cow position:chr13:37603396-37603262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 78

               
               
               Conread position:244-419
               
               
               Cow position:chr13:10013451-10013624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:245-433
               
               
               Cow position:chr13:28696044-28696225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:245-462
               
               
               Cow position:chr13:61162602-61162822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):52, 199

               
               
               Conread position:245-500
               
               
               Cow position:chr13:33517966-33517709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 29

               
               
               Conread position:246-500
               
               
               Cow position:chr13:5091709-5091446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:247-436
               
               
               Cow position:chr13:16711588-16711777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):143, 54

               
               
               Conread position:250-488
               
               
               Cow position:chr13:5752464-5752220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 143

               
               
               Conread position:250-500
               
               
               Cow position:chr13:61170754-61170500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 48

               
               
               Conread position:251-387
               
               
               Cow position:chr13:8433237-8433377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):57, 5

               
               
               Conread position:252-468
               
               
               Cow position:chr13:62474833-62474616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:254-500
               
               
               Cow position:chr13:41155066-41154831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):53, 137

               
               
               Conread position:255-386
               
               
               Cow position:chr13:11824258-11824387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:255-492
               
               
               Cow position:chr13:39950538-39950305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):47, 106

               
               
               Conread position:255-500
               
               
               Cow position:chr13:52178077-52178313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):150, 69

               
               
               Conread position:255-500
               
               
               Cow position:chr13:54093714-54093955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:257-500
               
               
               Cow position:chr13:22775327-22775096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:258-420
               
               
               Cow position:chr13:13809591-13809428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):55, 156

               
               
               Conread position:259-406
               
               
               Cow position:chr13:55947746-55947891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:259-423
               
               
               Cow position:chr13:6113331-6113165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):132, 39

               
               
               Conread position:263-397
               
               
               Cow position:chr13:322808-322674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:263-441
               
               
               Cow position:chr13:1338979-1339162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:263-447
               
               
               Cow position:chr13:18941853-18942037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:263-453
               
               
               Cow position:chr13:22030073-22030256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):159, 32

               
               
               Conread position:263-462
               
               
               Cow position:chr13:36714791-36714997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 95

               
               
               Conread position:263-491
               
               
               Cow position:chr13:9548670-9548900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):45, 114

               
               
               Conread position:263-491
               
               
               Cow position:chr13:20531172-20530935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:263-491
               
               
               Cow position:chr13:51108468-51108697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 40

               
               
               Conread position:263-499
               
               
               Cow position:chr13:20041993-20041747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 75

               
               
               Conread position:263-499
               
               
               Cow position:chr13:34052612-34052387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):173, 39

               
               
               Conread position:263-500
               
               
               Cow position:chr13:25261835-25261593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 60

               
               
               Conread position:263-500
               
               
               Cow position:chr13:37946229-37946001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 24

               
               
               Conread position:263-500
               
               
               Cow position:chr13:39948440-39948204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 50

               
               
               Conread position:264-500
               
               
               Cow position:chr13:22779939-22780161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:266-492
               
               
               Cow position:chr13:3003409-3003654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:266-492
               
               
               Cow position:chr13:9569984-9570190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:266-492
               
               
               Cow position:chr13:11147283-11147513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):163, 37

               
               
               Conread position:266-500
               
               
               Cow position:chr13:6975815-6975575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:266-500
               
               
               Cow position:chr13:37980665-37980432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:267-500
               
               
               Cow position:chr13:9884748-9884983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:184
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):166, 101

               
               
               Conread position:267-500
               
               
               Cow position:chr13:43812067-43812299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:185
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):158, 30

               
               
               Conread position:267-500
               
               
               Cow position:chr13:43839562-43839330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):163, 30

               
               
               Conread position:268-440
               
               
               Cow position:chr13:52858561-52858728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:268-490
               
               
               Cow position:chr13:20864034-20863813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:268-500
               
               
               Cow position:chr13:563161-562923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:192
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 53

               
               
               Conread position:268-500
               
               
               Cow position:chr13:5175543-5175785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):14, 25

               
               
               Conread position:268-500
               
               
               Cow position:chr13:20536485-20536715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 17

               
               
               Conread position:269-489
               
               
               Cow position:chr13:25249175-25248939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):36, 61

               
               
               Conread position:269-500
               
               
               Cow position:chr13:54237336-54237561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 53

               
               
               Conread position:270-500
               
               
               Cow position:chr13:13265790-13266017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:272-441
               
               
               Cow position:chr13:21193403-21193559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:273-500
               
               
               Cow position:chr13:7257383-7257616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):116, 47

               
               
               Conread position:274-492
               
               
               Cow position:chr13:18551436-18551655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):115, 28

               
               
               Conread position:274-501
               
               
               Cow position:chr13:26316415-26316188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):124, 31

               
               
               Conread position:278-500
               
               
               Cow position:chr13:37517145-37516921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 28

               
               
               Conread position:279-476
               
               
               Cow position:chr13:24822774-24822576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 83

               
               
               Conread position:279-500
               
               
               Cow position:chr13:2339429-2339645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:176
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):140, 22

               
               
               Conread position:280-435
               
               
               Cow position:chr13:27517168-27517007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:282-500
               
               
               Cow position:chr13:21904659-21904877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 31

               
               
               Conread position:286-500
               
               
               Cow position:chr13:24776284-24776506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):147, 17

               
               
               Conread position:294-500
               
               
               Cow position:chr13:34556333-34556118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:298-441
               
               
               Cow position:chr13:20264902-20264759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):91, 23

               
               
               Conread position:298-477
               
               
               Cow position:chr13:5079211-5079033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):140, 11

               
               
               Conread position:303-500
               
               
               Cow position:chr13:48944686-48944876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:304-500
               
               
               Cow position:chr13:52922109-52922303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):145, 86

               
               
               Conread position:304-500
               
               
               Cow position:chr13:60690710-60690507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:164
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):129, 87

               
               
               Conread position:304-501
               
               
               Cow position:chr13:6894108-6894310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 91

               
               
               Conread position:305-408
               
               
               Cow position:chr13:4514478-4514580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:306-428
               
               
               Cow position:chr13:56275256-56275131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:306-428
               
               
               Cow position:chr13:56276257-56276384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:308-500
               
               
               Cow position:chr13:55295602-55295410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):127, 82

               
               
               Conread position:309-500
               
               
               Cow position:chr13:43629755-43629561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):59, 89

               
               
               Conread position:311-500
               
               
               Cow position:chr13:6606999-6606806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):119, 65

               
               
               Conread position:321-500
               
               
               Cow position:chr13:22025675-22025486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):112, 69

               
               
               Conread position:323-454
               
               
               Cow position:chr13:58743253-58743120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):43, 64

               
               
               Conread position:328-433
               
               
               Cow position:chr13:18741047-18740940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 63

               
               
               Conread position:328-490
               
               
               Cow position:chr13:15740104-15740274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:328-499
               
               
               Cow position:chr13:15947668-15947849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:328-500
               
               
               Cow position:chr13:21402755-21402580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):109, 38

               
               
               Conread position:328-500
               
               
               Cow position:chr13:38484872-38485046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:330-500
               
               
               Cow position:chr13:17815811-17815986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):96, 60

               
               
               Conread position:332-500
               
               
               Cow position:chr13:14927280-14927454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):97, 58

               
               
               Conread position:340-500
               
               
               Cow position:chr13:37947950-37947796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):49, 76

               
               
               Conread position:341-492
               
               
               Cow position:chr13:53308538-53308705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:341-500
               
               
               Cow position:chr13:60436832-60436668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:345-492
               
               
               Cow position:chr13:50681752-50681602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):70, 45
Show alignments to all cow chromosomes.
Conread position:	1-298
Cow position:	chr13:55765457-55765166 (view UCSC Genome Browser custom track)
Alignm length:	303
Alignm identity:	224
Alignm E-value:	0
Alignm gaps (pig, cow):	104, 48
Conread position:	4-500
Cow position:	chr13:60600213-60599727 (view UCSC Genome Browser custom track)
Alignm length:	504
Alignm identity:	334
Alignm E-value:	0
Alignm gaps (pig, cow):	101, 25
Conread position:	13-436
Cow position:	chr13:49823749-49824170 (view UCSC Genome Browser custom track)
Alignm length:	435
Alignm identity:	281
Alignm E-value:	0
Alignm gaps (pig, cow):	89, 226
Conread position:	14-436
Cow position:	chr13:26742853-26743270 (view UCSC Genome Browser custom track)
Alignm length:	436
Alignm identity:	289
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	87, 24
Conread position:	15-268
Cow position:	chr13:17223052-17223306 (view UCSC Genome Browser custom track)
Alignm length:	260
Alignm identity:	177
Alignm E-value:	2e-26
Alignm gaps (pig, cow):	86, 51
Conread position:	19-321
Cow position:	chr13:3209587-3209287 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	197
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	135, 48
Conread position:	19-500
Cow position:	chr13:10845355-10845808 (view UCSC Genome Browser custom track)
Alignm length:	489
Alignm identity:	343
Alignm E-value:	0
Alignm gaps (pig, cow):	86, 46
Conread position:	20-310
Cow position:	chr13:28071611-28071895 (view UCSC Genome Browser custom track)
Alignm length:	294
Alignm identity:	211
Alignm E-value:	9.00054e-42
Alignm gaps (pig, cow):	60, 19
Conread position:	20-467
Cow position:	chr13:19188050-19188486 (view UCSC Genome Browser custom track)
Alignm length:	458
Alignm identity:	328
Alignm E-value:	0
Alignm gaps (pig, cow):	81, 29
Conread position:	21-356
Cow position:	chr13:45073505-45073182 (view UCSC Genome Browser custom track)
Alignm length:	342
Alignm identity:	225
Alignm E-value:	1e-23
Alignm gaps (pig, cow):	181, 36
Conread position:	21-446
Cow position:	chr13:28689213-28689626 (view UCSC Genome Browser custom track)
Alignm length:	434
Alignm identity:	291
Alignm E-value:	2e-40
Alignm gaps (pig, cow):	51, 28
Conread position:	21-500
Cow position:	chr13:21275588-21276070 (view UCSC Genome Browser custom track)
Alignm length:	492
Alignm identity:	371
Alignm E-value:	0
Alignm gaps (pig, cow):	25, 9
Conread position:	22-236
Cow position:	chr13:42203762-42203975 (view UCSC Genome Browser custom track)
Alignm length:	220
Alignm identity:	158
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	20, 87
Conread position:	22-499
Cow position:	chr13:32017778-32017308 (view UCSC Genome Browser custom track)
Alignm length:	491
Alignm identity:	360
Alignm E-value:	0
Alignm gaps (pig, cow):	83, 26
Conread position:	24-232
Cow position:	chr13:8682188-8682402 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	156
Alignm E-value:	6e-28
Alignm gaps (pig, cow):	30, 48
Conread position:	26-256
Cow position:	chr13:45498973-45499199 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	162
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	79, 39
Conread position:	29-257
Cow position:	chr13:369379-369152 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	172
Alignm E-value:	4e-35
Alignm gaps (pig, cow):	76, 36
Conread position:	30-219
Cow position:	chr13:18814482-18814677 (view UCSC Genome Browser custom track)
Alignm length:	198
Alignm identity:	140
Alignm E-value:	9e-22
Alignm gaps (pig, cow):	74, 33
Conread position:	30-300
Cow position:	chr13:59460990-59461252 (view UCSC Genome Browser custom track)
Alignm length:	275
Alignm identity:	187
Alignm E-value:	5e-27
Alignm gaps (pig, cow):	67, 47
Conread position:	31-213
Cow position:	chr13:8229899-8230082 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	133
Alignm E-value:	3e-22
Alignm gaps (pig, cow):	74, 32