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Cow genome map

           
Conread name:
           
Utr2-C0001811_G15
        

               
Conread position:
               
2-423
               

               
Cow position:
               
chr21:10859149-10858731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
52, 9
               

               
Conread position:
               
8-252
               

               
Cow position:
               
chr21:3796614-3796852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
10, 72
               

               
Conread position:
               
8-500
               

               
Cow position:
               
chr21:25127937-25127442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 30
               

               
Conread position:
               
11-257
               

               
Cow position:
               
chr21:7539201-7539450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
11-261
               

               
Cow position:
               
chr21:22720896-22720648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 174
               

               
Conread position:
               
17-500
               

               
Cow position:
               
chr21:29014603-29015058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 22
               

               
Conread position:
               
19-300
               

               
Cow position:
               
chr21:40475813-40475535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 19
               

               
Conread position:
               
19-473
               

               
Cow position:
               
chr21:938332-937899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 19
               

               
Conread position:
               
20-271
               

               
Cow position:
               
chr21:29418888-29418636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
20-500
               

               
Cow position:
               
chr21:38918518-38918048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
21-203
               

               
Cow position:
               
chr21:40821581-40821763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
40, 9
               

               
Conread position:
               
21-475
               

               
Cow position:
               
chr21:9301541-9301067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
40, 57
               

               
Conread position:
               
22-490
               

               
Cow position:
               
chr21:40589161-40589639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 366
               

               
Conread position:
               
23-487
               

               
Cow position:
               
chr21:19195842-19196320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 290
               

               
Conread position:
               
23-492
               

               
Cow position:
               
chr21:11739807-11740289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
26-389
               

               
Cow position:
               
chr21:12339922-12339586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
282, 13
               

               
Conread position:
               
29-499
               

               
Cow position:
               
chr21:10264338-10263875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
30-258
               

               
Cow position:
               
chr21:12349072-12348842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 28
               

               
Conread position:
               
30-466
               

               
Cow position:
               
chr21:7785524-7785093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
73, 9
               

               
Conread position:
               
30-500
               

               
Cow position:
               
chr21:23673056-23672577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
32-260
               

               
Cow position:
               
chr21:19220494-19220722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
73, 14
               

               
Conread position:
               
34-283
               

               
Cow position:
               
chr21:30145331-30145576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
34-500
               

               
Cow position:
               
chr21:29001841-29002328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
49, 158
               

               
Conread position:
               
36-256
               

               
Cow position:
               
chr21:18450053-18449832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
36-279
               

               
Cow position:
               
chr21:6154100-6153857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
121, 35
               

               
Conread position:
               
36-372
               

               
Cow position:
               
chr21:17997547-17997227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
153, 31
               

               
Conread position:
               
36-489
               

               
Cow position:
               
chr21:34654366-34653927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 29
               

               
Conread position:
               
36-500
               

               
Cow position:
               
chr21:44113833-44114295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
37-434
               

               
Cow position:
               
chr21:17559615-17560025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
38-499
               

               
Cow position:
               
chr21:4400089-4399634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
39-278
               

               
Cow position:
               
chr21:13090676-13090431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
39-313
               

               
Cow position:
               
chr21:8713657-8713937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
31, 254
               

               
Conread position:
               
39-329
               

               
Cow position:
               
chr21:29658570-29658286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
66, 28
               

               
Conread position:
               
39-336
               

               
Cow position:
               
chr21:8430798-8431102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 284
               

               
Conread position:
               
39-343
               

               
Cow position:
               
chr21:7768724-7768427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
39-414
               

               
Cow position:
               
chr21:19703024-19702648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
66, 18
               

               
Conread position:
               
39-459
               

               
Cow position:
               
chr21:18817965-18818402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 267
               

               
Conread position:
               
39-498
               

               
Cow position:
               
chr21:47763830-47764277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
388, 23
               

               
Conread position:
               
39-499
               

               
Cow position:
               
chr21:27568863-27569326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 40
               

               
Conread position:
               
39-500
               

               
Cow position:
               
chr21:24094460-24094910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 140
               

               
Conread position:
               
39-500
               

               
Cow position:
               
chr21:27863225-27863686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 24
               

               
Conread position:
               
40-284
               

               
Cow position:
               
chr21:37928948-37928700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
41-300
               

               
Cow position:
               
chr21:43693113-43692852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
41-410
               

               
Cow position:
               
chr21:15543944-15544290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
41-500
               

               
Cow position:
               
chr21:4281588-4282034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
41-500
               

               
Cow position:
               
chr21:41974071-41974545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 5
               

               
Conread position:
               
42-200
               

               
Cow position:
               
chr21:2904009-2904170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
98, 35
               

               
Conread position:
               
42-281
               

               
Cow position:
               
chr21:15012723-15012493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
42-284
               

               
Cow position:
               
chr21:17842698-17842946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 157
               

               
Conread position:
               
42-431
               

               
Cow position:
               
chr21:45906327-45906714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
43-248
               

               
Cow position:
               
chr21:44732753-44732956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
43-351
               

               
Cow position:
               
chr21:44724087-44724380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 22
               

               
Conread position:
               
43-376
               

               
Cow position:
               
chr21:31159682-31159362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
43-400
               

               
Cow position:
               
chr21:11779239-11779592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
19, 180
               

               
Conread position:
               
43-451
               

               
Cow position:
               
chr21:37789706-37790115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
43-498
               

               
Cow position:
               
chr21:37299752-37299303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
43-500
               

               
Cow position:
               
chr21:49699743-49700202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 245
               

               
Conread position:
               
44-271
               

               
Cow position:
               
chr21:39277995-39278235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
44-299
               

               
Cow position:
               
chr21:36682613-36682361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
45-248
               

               
Cow position:
               
chr21:31278479-31278270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
59, 12
               

               
Conread position:
               
45-296
               

               
Cow position:
               
chr21:1562242-1562504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 23
               

               
Conread position:
               
46-300
               

               
Cow position:
               
chr21:13463007-13462749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 30
               

               
Conread position:
               
46-388
               

               
Cow position:
               
chr21:28919242-28919576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
46-499
               

               
Cow position:
               
chr21:25345154-25344712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 21
               

               
Conread position:
               
46-500
               

               
Cow position:
               
chr21:22718496-22718947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
47-315
               

               
Cow position:
               
chr21:46612514-46612774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 10
               

               
Conread position:
               
47-328
               

               
Cow position:
               
chr21:31652673-31652400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 17
               

               
Conread position:
               
48-200
               

               
Cow position:
               
chr21:42227409-42227564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
48-229
               

               
Cow position:
               
chr21:5345168-5344984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
48-248
               

               
Cow position:
               
chr21:2787515-2787712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
48-256
               

               
Cow position:
               
chr21:15869974-15869769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 19
               

               
Conread position:
               
48-348
               

               
Cow position:
               
chr21:10130436-10130132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
57, 279
               

               
Conread position:
               
48-410
               

               
Cow position:
               
chr21:40266416-40266049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 198
               

               
Conread position:
               
48-429
               

               
Cow position:
               
chr21:47363435-47363834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
48-500
               

               
Cow position:
               
chr21:8618551-8618108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 109
               

               
Conread position:
               
48-500
               

               
Cow position:
               
chr21:27145701-27146158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 160
               

               
Conread position:
               
48-500
               

               
Cow position:
               
chr21:33982526-33982975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
49-248
               

               
Cow position:
               
chr21:4269223-4269031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
177, 16
               

               
Conread position:
               
49-258
               

               
Cow position:
               
chr21:27409450-27409655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
49-270
               

               
Cow position:
               
chr21:5214646-5214415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
21, 225
               

               
Conread position:
               
49-275
               

               
Cow position:
               
chr21:28598770-28598541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
49-300
               

               
Cow position:
               
chr21:13943827-13944080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
19, 79
               

               
Conread position:
               
49-336
               

               
Cow position:
               
chr21:13589047-13588762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
49-362
               

               
Cow position:
               
chr21:38720533-38720226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 17
               

               
Conread position:
               
49-385
               

               
Cow position:
               
chr21:19059805-19060136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
49-424
               

               
Cow position:
               
chr21:9036589-9036209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 76
               

               
Conread position:
               
49-436
               

               
Cow position:
               
chr21:24342977-24343363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 267
               

               
Conread position:
               
49-446
               

               
Cow position:
               
chr21:27669298-27668904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
42, 16
               

               
Conread position:
               
49-491
               

               
Cow position:
               
chr21:15584136-15584567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
49-499
               

               
Cow position:
               
chr21:27521052-27521493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
49-500
               

               
Cow position:
               
chr21:13047903-13048363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
49-500
               

               
Cow position:
               
chr21:27123836-27124293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
50-247
               

               
Cow position:
               
chr21:7357832-7357630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
50-258
               

               
Cow position:
               
chr21:24757224-24757018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
54, 90
               

               
Conread position:
               
50-283
               

               
Cow position:
               
chr21:40820565-40820801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
50-299
               

               
Cow position:
               
chr21:6583853-6584101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
55, 136
               

               
Conread position:
               
50-355
               

               
Cow position:
               
chr21:13656350-13656654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
50-399
               

               
Cow position:
               
chr21:742561-742224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 100
               

               
Conread position:
               
50-412
               

               
Cow position:
               
chr21:47719018-47719373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
55, 40
               

               
Conread position:
               
50-499
               

               
Cow position:
               
chr21:22856511-22856049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 211
               

               
Conread position:
               
50-499
               

               
Cow position:
               
chr21:32559083-32559519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 105
               

               
Conread position:
               
50-500
               

               
Cow position:
               
chr21:5650181-5649740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
55, 27
               

               
Conread position:
               
50-500
               

               
Cow position:
               
chr21:12981452-12981903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 25
               

               
Conread position:
               
50-500
               

               
Cow position:
               
chr21:17184206-17183756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 15
               

               
Conread position:
               
50-500
               

               
Cow position:
               
chr21:45151338-45151789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 254
               

               
Conread position:
               
51-250
               

               
Cow position:
               
chr21:3135584-3135784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr21:43316605-43316829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
51-300
               

               
Cow position:
               
chr21:31759941-31760178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
105, 26
               

               
Conread position:
               
51-300
               

               
Cow position:
               
chr21:36022899-36023155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 246
               

               
Conread position:
               
51-314
               

               
Cow position:
               
chr21:39319124-39319388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 249
               

               
Conread position:
               
51-453
               

               
Cow position:
               
chr21:2260065-2260473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
51-497
               

               
Cow position:
               
chr21:14464871-14464413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 21
               

               
Conread position:
               
52-196
               

               
Cow position:
               
chr21:40593502-40593357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
5, 84
               

               
Conread position:
               
52-245
               

               
Cow position:
               
chr21:36879597-36879783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
22, 89
               

               
Conread position:
               
52-248
               

               
Cow position:
               
chr21:37495658-37495859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 106
               

               
Conread position:
               
52-411
               

               
Cow position:
               
chr21:10743675-10743317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 185
               

               
Conread position:
               
52-499
               

               
Cow position:
               
chr21:13634326-13633875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
53-200
               

               
Cow position:
               
chr21:41829095-41829246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
53-205
               

               
Cow position:
               
chr21:34209732-34209886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
52, 14
               

               
Conread position:
               
53-475
               

               
Cow position:
               
chr21:29978480-29978903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 93
               

               
Conread position:
               
54-192
               

               
Cow position:
               
chr21:12293307-12293164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
54-425
               

               
Cow position:
               
chr21:41617456-41617834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 184
               

               
Conread position:
               
54-441
               

               
Cow position:
               
chr21:10817316-10816919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 17
               

               
Conread position:
               
54-455
               

               
Cow position:
               
chr21:37350274-37349877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
47, 122
               

               
Conread position:
               
54-481
               

               
Cow position:
               
chr21:44963080-44962647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
49, 264
               

               
Conread position:
               
54-500
               

               
Cow position:
               
chr21:31701663-31702122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
51, 23
               

               
Conread position:
               
56-248
               

               
Cow position:
               
chr21:27568164-27567981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
104, 15
               

               
Conread position:
               
56-252
               

               
Cow position:
               
chr21:1464623-1464426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
100, 21
               

               
Conread position:
               
56-261
               

               
Cow position:
               
chr21:34737442-34737240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 68
               

               
Conread position:
               
56-292
               

               
Cow position:
               
chr21:30938385-30938629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
56-301
               

               
Cow position:
               
chr21:16498794-16498553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
56-447
               

               
Cow position:
               
chr21:23979898-23980290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 252
               

               
Conread position:
               
56-474
               

               
Cow position:
               
chr21:48233895-48234299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
56-488
               

               
Cow position:
               
chr21:6909609-6910038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
91, 21
               

               
Conread position:
               
56-490
               

               
Cow position:
               
chr21:41156151-41155704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
56-491
               

               
Cow position:
               
chr21:18800251-18800686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 23
               

               
Conread position:
               
56-500
               

               
Cow position:
               
chr21:802044-802460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
386, 23
               

               
Conread position:
               
57-254
               

               
Cow position:
               
chr21:9873600-9873398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
46, 63
               

               
Conread position:
               
57-286
               

               
Cow position:
               
chr21:17155668-17155902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
48, 232
               

               
Conread position:
               
57-287
               

               
Cow position:
               
chr21:13304075-13303840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
57-300
               

               
Cow position:
               
chr21:11755484-11755730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
48, 93
               

               
Conread position:
               
57-329
               

               
Cow position:
               
chr21:19561281-19561560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 266
               

               
Conread position:
               
57-333
               

               
Cow position:
               
chr21:12104631-12104367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 22
               

               
Conread position:
               
57-366
               

               
Cow position:
               
chr21:20165920-20165611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
15, 37
               

               
Conread position:
               
57-430
               

               
Cow position:
               
chr21:44658838-44658490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 14
               

               
Conread position:
               
57-447
               

               
Cow position:
               
chr21:18155284-18155678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
57-461
               

               
Cow position:
               
chr21:47327-46911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 344
               

               
Conread position:
               
57-500
               

               
Cow position:
               
chr21:82339-81904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 48
               

               
Conread position:
               
57-500
               

               
Cow position:
               
chr21:18568358-18568816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
57-500
               

               
Cow position:
               
chr21:22193813-22194277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
58-279
               

               
Cow position:
               
chr21:31658877-31659091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
45, 13
               

               
Conread position:
               
58-333
               

               
Cow position:
               
chr21:10148276-10147994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
58-343
               

               
Cow position:
               
chr21:10009538-10009826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
58-414
               

               
Cow position:
               
chr21:16570168-16569825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
261, 47
               

               
Conread position:
               
58-472
               

               
Cow position:
               
chr21:19407294-19407722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
58-476
               

               
Cow position:
               
chr21:13089191-13089610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 48
               

               
Conread position:
               
58-480
               

               
Cow position:
               
chr21:47008966-47009386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
17, 102
               

               
Conread position:
               
59-256
               

               
Cow position:
               
chr21:40551464-40551664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 185
               

               
Conread position:
               
59-274
               

               
Cow position:
               
chr21:21940133-21940346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
59-309
               

               
Cow position:
               
chr21:37835863-37835603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
45, 18
               

               
Conread position:
               
59-311
               

               
Cow position:
               
chr21:11174523-11174262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
59-500
               

               
Cow position:
               
chr21:9416520-9416076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 47
               

               
Conread position:
               
59-500
               

               
Cow position:
               
chr21:24858597-24858145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 145
               

               
Conread position:
               
60-231
               

               
Cow position:
               
chr21:16119886-16120058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
60-236
               

               
Cow position:
               
chr21:3379478-3379653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
43, 12
               

               
Conread position:
               
60-385
               

               
Cow position:
               
chr21:41522137-41522456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
97, 17
               

               
Conread position:
               
60-499
               

               
Cow position:
               
chr21:47464840-47465286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 108
               

               
Conread position:
               
62-300
               

               
Cow position:
               
chr21:15271164-15271412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
39, 94
               

               
Conread position:
               
63-500
               

               
Cow position:
               
chr21:30848674-30849105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 93
               

               
Conread position:
               
64-265
               

               
Cow position:
               
chr21:8986299-8986092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
41, 180
               

               
Conread position:
               
64-500
               

               
Cow position:
               
chr21:641858-641418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 77
               

               
Conread position:
               
64-500
               

               
Cow position:
               
chr21:13753145-13752727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 42
               

               
Conread position:
               
64-500
               

               
Cow position:
               
chr21:17432996-17433421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 43
               

               
Conread position:
               
65-255
               

               
Cow position:
               
chr21:27744301-27744105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 108
               

               
Conread position:
               
65-258
               

               
Cow position:
               
chr21:36280565-36280367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
65-291
               

               
Cow position:
               
chr21:18341491-18341262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
65-291
               

               
Cow position:
               
chr21:25014770-25014982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
64, 7
               

               
Conread position:
               
65-298
               

               
Cow position:
               
chr21:17519300-17519057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
65-382
               

               
Cow position:
               
chr21:10072438-10072099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 115
               

               
Conread position:
               
65-484
               

               
Cow position:
               
chr21:17455655-17455234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 107
               

               
Conread position:
               
65-498
               

               
Cow position:
               
chr21:40899614-40899172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 63
               

               
Conread position:
               
65-500
               

               
Cow position:
               
chr21:38449181-38449618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 14
               

               
Conread position:
               
66-235
               

               
Cow position:
               
chr21:18495486-18495321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
66-237
               

               
Cow position:
               
chr21:32536662-32536494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 74
               

               
Conread position:
               
66-323
               

               
Cow position:
               
chr21:42145090-42144839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
38, 63
               

               
Conread position:
               
66-426
               

               
Cow position:
               
chr21:30217944-30218271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
66-446
               

               
Cow position:
               
chr21:10673381-10673024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 81
               

               
Conread position:
               
66-483
               

               
Cow position:
               
chr21:6713254-6713674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 12
               

               
Conread position:
               
66-489
               

               
Cow position:
               
chr21:643591-643178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
67-204
               

               
Cow position:
               
chr21:30359080-30359216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
67-205
               

               
Cow position:
               
chr21:7535280-7535416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
67-213
               

               
Cow position:
               
chr21:16099290-16099443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
67-226
               

               
Cow position:
               
chr21:42047770-42047933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
67-238
               

               
Cow position:
               
chr21:45537460-45537281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
67-244
               

               
Cow position:
               
chr21:39788269-39788447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
37, 165
               

               
Conread position:
               
67-248
               

               
Cow position:
               
chr21:12473792-12473972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
38, 70
               

               
Conread position:
               
67-248
               

               
Cow position:
               
chr21:13134866-13134688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
93, 10
               

               
Conread position:
               
67-254
               

               
Cow position:
               
chr21:16797121-16796932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
67-254
               

               
Cow position:
               
chr21:28882453-28882262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
67-256
               

               
Cow position:
               
chr21:30970205-30970014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 49
               

               
Conread position:
               
67-259
               

               
Cow position:
               
chr21:37360970-37361166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
67-260
               

               
Cow position:
               
chr21:14247406-14247210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 113
               

               
Conread position:
               
67-261
               

               
Cow position:
               
chr21:10751316-10751118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 155
               

               
Conread position:
               
67-265
               

               
Cow position:
               
chr21:4109046-4108845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
37, 10
               

               
Conread position:
               
67-268
               

               
Cow position:
               
chr21:26828701-26828904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
37, 175
               

               
Conread position:
               
67-270
               

               
Cow position:
               
chr21:30976996-30977192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
67-270
               

               
Cow position:
               
chr21:38482652-38482448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
36, 177
               

               
Conread position:
               
67-276
               

               
Cow position:
               
chr21:5406082-5405875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
64, 45
               

               
Conread position:
               
67-280
               

               
Cow position:
               
chr21:26034100-26033882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
67-282
               

               
Cow position:
               
chr21:19148383-19148163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
67-282
               

               
Cow position:
               
chr21:25012347-25012135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
35, 10
               

               
Conread position:
               
67-284
               

               
Cow position:
               
chr21:27711964-27712192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
67-287
               

               
Cow position:
               
chr21:9905593-9905801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
67-290
               

               
Cow position:
               
chr21:12322768-12322547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 199
               

               
Conread position:
               
67-298
               

               
Cow position:
               
chr21:5218976-5218738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
67-299
               

               
Cow position:
               
chr21:27677752-27677518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
67-301
               

               
Cow position:
               
chr21:10423380-10423142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 89
               

               
Conread position:
               
67-306
               

               
Cow position:
               
chr21:20318782-20318541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
67-309
               

               
Cow position:
               
chr21:21969084-21968836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
67-311
               

               
Cow position:
               
chr21:9278798-9278548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
36, 228
               

               
Conread position:
               
67-332
               

               
Cow position:
               
chr21:44074961-44074697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
67-337
               

               
Cow position:
               
chr21:36508500-36508240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
67-339
               

               
Cow position:
               
chr21:8545749-8546021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 188
               

               
Conread position:
               
67-342
               

               
Cow position:
               
chr21:46132862-46132569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
37, 251
               

               
Conread position:
               
67-368
               

               
Cow position:
               
chr21:10656831-10657134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
38, 121
               

               
Conread position:
               
67-371
               

               
Cow position:
               
chr21:43388631-43388316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
67-383
               

               
Cow position:
               
chr21:21907171-21907476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 81
               

               
Conread position:
               
67-417
               

               
Cow position:
               
chr21:47713737-47714086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
67-435
               

               
Cow position:
               
chr21:6017901-6017519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
67-441
               

               
Cow position:
               
chr21:30236573-30236920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
67-449
               

               
Cow position:
               
chr21:16152710-16152315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 99
               

               
Conread position:
               
67-452
               

               
Cow position:
               
chr21:27810662-27810295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
36, 177
               

               
Conread position:
               
67-472
               

               
Cow position:
               
chr21:12461699-12462109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 84
               

               
Conread position:
               
67-479
               

               
Cow position:
               
chr21:957939-957521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 71
               

               
Conread position:
               
67-480
               

               
Cow position:
               
chr21:10004614-10005032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 12
               

               
Conread position:
               
67-486
               

               
Cow position:
               
chr21:10070653-10071081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
67-489
               

               
Cow position:
               
chr21:41454667-41455106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
37, 25
               

               
Conread position:
               
67-490
               

               
Cow position:
               
chr21:5238659-5238239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
17, 51
               

               
Conread position:
               
67-491
               

               
Cow position:
               
chr21:47861451-47861037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 71
               

               
Conread position:
               
67-492
               

               
Cow position:
               
chr21:13840598-13840164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 136
               

               
Conread position:
               
67-492
               

               
Cow position:
               
chr21:42501321-42500874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
67-495
               

               
Cow position:
               
chr21:44565459-44565862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 73
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chr21:13034765-13035213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 307
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chr21:33996980-33997387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 50
               

               
Conread position:
               
67-499
               

               
Cow position:
               
chr21:38901033-38900609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 80
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:5898140-5898564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:6051774-6051340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 11
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:26647728-26648172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 131
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:28733643-28734078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:36763331-36762887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:42841315-42841759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 314
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:44251571-44251992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 247
               

               
Conread position:
               
67-500
               

               
Cow position:
               
chr21:45970909-45971324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
67-501
               

               
Cow position:
               
chr21:3763482-3763905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 10
               

               
Conread position:
               
68-245
               

               
Cow position:
               
chr21:29011707-29011880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
37, 90
               

               
Conread position:
               
68-258
               

               
Cow position:
               
chr21:8494913-8494717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
16, 116
               

               
Conread position:
               
68-270
               

               
Cow position:
               
chr21:3178114-3177912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
92, 54
               

               
Conread position:
               
68-297
               

               
Cow position:
               
chr21:40291480-40291708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 97
               

               
Conread position:
               
68-316
               

               
Cow position:
               
chr21:31279521-31279278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
68-371
               

               
Cow position:
               
chr21:13395849-13395563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
153, 10
               

               
Conread position:
               
68-376
               

               
Cow position:
               
chr21:14027335-14027013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
68-430
               

               
Cow position:
               
chr21:6998210-6997846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 69
               

               
Conread position:
               
68-491
               

               
Cow position:
               
chr21:19958485-19958065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
36, 184
               

               
Conread position:
               
68-491
               

               
Cow position:
               
chr21:39403260-39403696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
68-495
               

               
Cow position:
               
chr21:44825608-44826045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 11
               

               
Conread position:
               
68-499
               

               
Cow position:
               
chr21:39888457-39888909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 260
               

               
Conread position:
               
68-500
               

               
Cow position:
               
chr21:27229534-27229961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 40
               

               
Conread position:
               
68-500
               

               
Cow position:
               
chr21:32339476-32339903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 83
               

               
Conread position:
               
68-500
               

               
Cow position:
               
chr21:46848865-46849289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
69-232
               

               
Cow position:
               
chr21:21772360-21772192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
69-260
               

               
Cow position:
               
chr21:11099702-11099896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
69-261
               

               
Cow position:
               
chr21:1283995-1283806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
36, 50
               

               
Conread position:
               
69-277
               

               
Cow position:
               
chr21:34738839-34738635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
174, 35
               

               
Conread position:
               
69-294
               

               
Cow position:
               
chr21:17418814-17419041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 134
               

               
Conread position:
               
69-296
               

               
Cow position:
               
chr21:41041215-41040983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
69-300
               

               
Cow position:
               
chr21:24060924-24061156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
69-329
               

               
Cow position:
               
chr21:13580683-13580420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 106
               

               
Conread position:
               
69-351
               

               
Cow position:
               
chr21:26562890-26563172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
11, 202
               

               
Conread position:
               
69-361
               

               
Cow position:
               
chr21:8950461-8950155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
36, 115
               

               
Conread position:
               
69-392
               

               
Cow position:
               
chr21:976881-977200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
123, 36
               

               
Conread position:
               
69-405
               

               
Cow position:
               
chr21:7394632-7394314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 24
               

               
Conread position:
               
69-445
               

               
Cow position:
               
chr21:8207025-8206665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
69-448
               

               
Cow position:
               
chr21:16915048-16914666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 8
               

               
Conread position:
               
69-464
               

               
Cow position:
               
chr21:30835634-30835235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 196
               

               
Conread position:
               
69-485
               

               
Cow position:
               
chr21:13713569-13713995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
69-486
               

               
Cow position:
               
chr21:23606935-23606522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 39
               

               
Conread position:
               
69-491
               

               
Cow position:
               
chr21:11027090-11027514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
69-491
               

               
Cow position:
               
chr21:40134414-40133999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 47
               

               
Conread position:
               
69-498
               

               
Cow position:
               
chr21:39664129-39664553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
17, 261
               

               
Conread position:
               
69-499
               

               
Cow position:
               
chr21:34001-33556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 249
               

               
Conread position:
               
69-499
               

               
Cow position:
               
chr21:3236771-3236365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
69-500
               

               
Cow position:
               
chr21:5427195-5426777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 77
               

               
Conread position:
               
69-500
               

               
Cow position:
               
chr21:12154392-12153968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
69-500
               

               
Cow position:
               
chr21:17512042-17511610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 36
               

               
Conread position:
               
69-500
               

               
Cow position:
               
chr21:31253797-31253370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
69-500
               

               
Cow position:
               
chr21:41621395-41620953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 10
               

               
Conread position:
               
70-255
               

               
Cow position:
               
chr21:41738175-41737988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 59
               

               
Conread position:
               
70-293
               

               
Cow position:
               
chr21:17416023-17416250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
39, 88
               

               
Conread position:
               
70-300
               

               
Cow position:
               
chr21:41610445-41610202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 7
               

               
Conread position:
               
70-473
               

               
Cow position:
               
chr21:14452500-14452098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
70-486
               

               
Cow position:
               
chr21:47495389-47495809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 35
               

               
Conread position:
               
70-499
               

               
Cow position:
               
chr21:18064660-18065089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 8
               

               
Conread position:
               
71-284
               

               
Cow position:
               
chr21:3415923-3415705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
71-296
               

               
Cow position:
               
chr21:13960953-13960727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
71-390
               

               
Cow position:
               
chr21:22014457-22014131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
31, 90
               

               
Conread position:
               
71-492
               

               
Cow position:
               
chr21:13584786-13585218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 202
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr21:12366639-12366221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 235
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr21:28028065-28027637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 192
               

               
Conread position:
               
71-500
               

               
Cow position:
               
chr21:37706146-37706573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 259
               

               
Conread position:
               
72-232
               

               
Cow position:
               
chr21:43655967-43655805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
32, 113
               

               
Conread position:
               
72-241
               

               
Cow position:
               
chr21:30031129-30031292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
72-248
               

               
Cow position:
               
chr21:438821-438649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
33, 79
               

               
Conread position:
               
72-293
               

               
Cow position:
               
chr21:13674385-13674610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
72-299
               

               
Cow position:
               
chr21:21616040-21615818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
72-335
               

               
Cow position:
               
chr21:32392798-32393049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
72-387
               

               
Cow position:
               
chr21:16604047-16604358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 237
               

               
Conread position:
               
72-389
               

               
Cow position:
               
chr21:868653-868978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 263
               

               
Conread position:
               
72-418
               

               
Cow position:
               
chr21:40432729-40432368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 249
               

               
Conread position:
               
72-491
               

               
Cow position:
               
chr21:32297243-32297668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
32, 229
               

               
Conread position:
               
72-500
               

               
Cow position:
               
chr21:34010131-34010557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 102
               

               
Conread position:
               
73-226
               

               
Cow position:
               
chr21:33384235-33384393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
73-235
               

               
Cow position:
               
chr21:8358965-8359125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
73-237
               

               
Cow position:
               
chr21:42905138-42905300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
73-256
               

               
Cow position:
               
chr21:15305031-15305220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
73-258
               

               
Cow position:
               
chr21:24351115-24350929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
24, 141
               

               
Conread position:
               
73-270
               

               
Cow position:
               
chr21:42189496-42189690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
73-273
               

               
Cow position:
               
chr21:745434-745238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 80
               

               
Conread position:
               
73-283
               

               
Cow position:
               
chr21:2536872-2537087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
73-292
               

               
Cow position:
               
chr21:13225981-13225758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
31, 52
               

               
Conread position:
               
73-300
               

               
Cow position:
               
chr21:17252712-17252943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
6, 174
               

               
Conread position:
               
73-311
               

               
Cow position:
               
chr21:37837814-37838043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 65
               

               
Conread position:
               
73-403
               

               
Cow position:
               
chr21:41140451-41140783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 174
               

               
Conread position:
               
73-458
               

               
Cow position:
               
chr21:30222606-30222217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
73-491
               

               
Cow position:
               
chr21:28244731-28244318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
73-500
               

               
Cow position:
               
chr21:3585100-3585524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 236
               

               
Conread position:
               
73-500
               

               
Cow position:
               
chr21:23587135-23586710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 5
               

               
Conread position:
               
74-254
               

               
Cow position:
               
chr21:28618039-28617869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
74-279
               

               
Cow position:
               
chr21:38943345-38943563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
74-293
               

               
Cow position:
               
chr21:31246534-31246306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 137
               

               
Conread position:
               
74-336
               

               
Cow position:
               
chr21:71849-71585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
31, 92
               

               
Conread position:
               
74-362
               

               
Cow position:
               
chr21:8426706-8426421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
74-376
               

               
Cow position:
               
chr21:17983234-17982936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
31, 19
               

               
Conread position:
               
74-392
               

               
Cow position:
               
chr21:17890566-17890247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 227
               

               
Conread position:
               
74-440
               

               
Cow position:
               
chr21:17874927-17875294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 228
               

               
Conread position:
               
74-450
               

               
Cow position:
               
chr21:12916155-12916537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 234
               

               
Conread position:
               
74-471
               

               
Cow position:
               
chr21:20153220-20152810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
74-486
               

               
Cow position:
               
chr21:9311318-9310893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 234
               

               
Conread position:
               
74-494
               

               
Cow position:
               
chr21:23568488-23568048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
74-500
               

               
Cow position:
               
chr21:23535976-23535550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 194
               

               
Conread position:
               
74-500
               

               
Cow position:
               
chr21:30592051-30592470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
74-500
               

               
Cow position:
               
chr21:46972902-46973292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 54
               

               
Conread position:
               
75-315
               

               
Cow position:
               
chr21:28907287-28907523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
76-258
               

               
Cow position:
               
chr21:18783205-18783392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
28, 80
               

               
Conread position:
               
77-247
               

               
Cow position:
               
chr21:41437872-41437696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
77-258
               

               
Cow position:
               
chr21:6292009-6291823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
77-276
               

               
Cow position:
               
chr21:48482270-48482469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
26, 64
               

               
Conread position:
               
77-308
               

               
Cow position:
               
chr21:24797915-24797684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
28, 163
               

               
Conread position:
               
77-357
               

               
Cow position:
               
chr21:44829496-44829783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
28, 225
               

               
Conread position:
               
77-361
               

               
Cow position:
               
chr21:28030539-28030263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
77-380
               

               
Cow position:
               
chr21:13842753-13842444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 239
               

               
Conread position:
               
77-388
               

               
Cow position:
               
chr21:36910997-36910688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
28, 67
               

               
Conread position:
               
77-410
               

               
Cow position:
               
chr21:8349582-8349256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
232, 76
               

               
Conread position:
               
77-411
               

               
Cow position:
               
chr21:33413837-33414158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
70, 28
               

               
Conread position:
               
77-492
               

               
Cow position:
               
chr21:48637496-48637904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
78-258
               

               
Cow position:
               
chr21:36115866-36115680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
78-299
               

               
Cow position:
               
chr21:11353323-11353098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 191
               

               
Conread position:
               
78-307
               

               
Cow position:
               
chr21:20213512-20213748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
28, 95
               

               
Conread position:
               
78-336
               

               
Cow position:
               
chr21:12739347-12739079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
25, 131
               

               
Conread position:
               
78-336
               

               
Cow position:
               
chr21:46599617-46599359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 87
               

               
Conread position:
               
78-368
               

               
Cow position:
               
chr21:13889395-13889682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
27, 140
               

               
Conread position:
               
78-427
               

               
Cow position:
               
chr21:22209984-22210333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 94
               

               
Conread position:
               
78-492
               

               
Cow position:
               
chr21:15444823-15445237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 154
               

               
Conread position:
               
78-492
               

               
Cow position:
               
chr21:30231437-30231860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 120
               

               
Conread position:
               
78-499
               

               
Cow position:
               
chr21:1059317-1058911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 30
               

               
Conread position:
               
78-500
               

               
Cow position:
               
chr21:36756867-36756448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 30
               

               
Conread position:
               
79-229
               

               
Cow position:
               
chr21:34727462-34727313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 127
               

               
Conread position:
               
79-306
               

               
Cow position:
               
chr21:46809506-46809742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
25, 51
               

               
Conread position:
               
79-372
               

               
Cow position:
               
chr21:36695832-36696126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
80, 226
               

               
Conread position:
               
79-410
               

               
Cow position:
               
chr21:1511544-1511219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 72
               

               
Conread position:
               
79-500
               

               
Cow position:
               
chr21:11644707-11645135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 89
               

               
Conread position:
               
80-432
               

               
Cow position:
               
chr21:22121759-22121428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 69
               

               
Conread position:
               
80-499
               

               
Cow position:
               
chr21:23822409-23822003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
25, 106
               

               
Conread position:
               
80-500
               

               
Cow position:
               
chr21:20160935-20160517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 222
               

               
Conread position:
               
81-499
               

               
Cow position:
               
chr21:17193492-17193925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
84-500
               

               
Cow position:
               
chr21:29069070-29069495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 313
               

               
Conread position:
               
85-300
               

               
Cow position:
               
chr21:7066133-7066346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
87-247
               

               
Cow position:
               
chr21:31258719-31258554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
87-256
               

               
Cow position:
               
chr21:14746022-14745848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
87-274
               

               
Cow position:
               
chr21:42017351-42017540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
87-293
               

               
Cow position:
               
chr21:19161965-19161754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
87-300
               

               
Cow position:
               
chr21:24266311-24266530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
18, 196
               

               
Conread position:
               
87-333
               

               
Cow position:
               
chr21:41287546-41287792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
18, 53
               

               
Conread position:
               
87-419
               

               
Cow position:
               
chr21:41107526-41107843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
87-427
               

               
Cow position:
               
chr21:28237449-28237803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
87-462
               

               
Cow position:
               
chr21:34151826-34151452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
87-500
               

               
Cow position:
               
chr21:8351044-8351470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 78
               

               
Conread position:
               
87-500
               

               
Cow position:
               
chr21:14760807-14760414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 34
               

               
Conread position:
               
87-501
               

               
Cow position:
               
chr21:10114083-10114496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 100
               

               
Conread position:
               
88-257
               

               
Cow position:
               
chr21:45651212-45651382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
88-399
               

               
Cow position:
               
chr21:34049640-34049940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
32, 44
               

               
Conread position:
               
88-462
               

               
Cow position:
               
chr21:10561336-10561707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 49
               

               
Conread position:
               
88-477
               

               
Cow position:
               
chr21:42007219-42007603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 27
               

               
Conread position:
               
88-484
               

               
Cow position:
               
chr21:10261522-10261131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
88-500
               

               
Cow position:
               
chr21:3360767-3361181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
89-437
               

               
Cow position:
               
chr21:10410471-10410120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
91-247
               

               
Cow position:
               
chr21:7424767-7424927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
92-499
               

               
Cow position:
               
chr21:41198152-41198576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
101-294
               

               
Cow position:
               
chr21:13716866-13717060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
61, 45
               

               
Conread position:
               
101-296
               

               
Cow position:
               
chr21:28191582-28191395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 109
               

               
Conread position:
               
101-353
               

               
Cow position:
               
chr21:828977-829227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
204, 62
               

               
Conread position:
               
101-400
               

               
Cow position:
               
chr21:10292727-10292428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 206
               

               
Conread position:
               
101-407
               

               
Cow position:
               
chr21:7377690-7377998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 298
               

               
Conread position:
               
101-440
               

               
Cow position:
               
chr21:9697845-9698189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
64, 224
               

               
Conread position:
               
101-445
               

               
Cow position:
               
chr21:10978714-10979050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
57, 15
               

               
Conread position:
               
101-491
               

               
Cow position:
               
chr21:46912782-46912384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 164
               

               
Conread position:
               
101-492
               

               
Cow position:
               
chr21:6624392-6623984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 203
               

               
Conread position:
               
103-298
               

               
Cow position:
               
chr21:7221117-7221303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 46
               

               
Conread position:
               
105-292
               

               
Cow position:
               
chr21:6735964-6736146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
108-236
               

               
Cow position:
               
chr21:15413967-15414095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
108-494
               

               
Cow position:
               
chr21:17642763-17643133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 46
               

               
Conread position:
               
108-500
               

               
Cow position:
               
chr21:19259042-19258660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 27
               

               
Conread position:
               
113-356
               

               
Cow position:
               
chr21:6388219-6387980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 37
               

               
Conread position:
               
114-301
               

               
Cow position:
               
chr21:8213063-8213244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
120-489
               

               
Cow position:
               
chr21:28429659-28429294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 185
               

               
Conread position:
               
121-494
               

               
Cow position:
               
chr21:18929909-18929537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
121-494
               

               
Cow position:
               
chr21:21983021-21982646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
21, 112
               

               
Conread position:
               
122-437
               

               
Cow position:
               
chr21:21633090-21633401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
122-498
               

               
Cow position:
               
chr21:9990723-9990350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 112
               

               
Conread position:
               
122-500
               

               
Cow position:
               
chr21:21169281-21169661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 115
               

               
Conread position:
               
122-500
               

               
Cow position:
               
chr21:45329742-45330107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
124-422
               

               
Cow position:
               
chr21:4280464-4280756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
125-383
               

               
Cow position:
               
chr21:19514062-19513818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
148, 23
               

               
Conread position:
               
125-491
               

               
Cow position:
               
chr21:41579965-41579590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 14
               

               
Conread position:
               
126-490
               

               
Cow position:
               
chr21:10515014-10514651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
5, 56
               

               
Conread position:
               
126-499
               

               
Cow position:
               
chr21:13727553-13727925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
11, 111
               

               
Conread position:
               
127-500
               

               
Cow position:
               
chr21:5392329-5392709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 40
               

               
Conread position:
               
129-266
               

               
Cow position:
               
chr21:42131149-42131286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
130-294
               

               
Cow position:
               
chr21:22313641-22313475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
130-300
               

               
Cow position:
               
chr21:30119901-30119729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
130-351
               

               
Cow position:
               
chr21:30157601-30157823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
163, 40
               

               
Conread position:
               
130-414
               

               
Cow position:
               
chr21:36910134-36909858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
130-499
               

               
Cow position:
               
chr21:12801544-12801912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 22
               

               
Conread position:
               
131-357
               

               
Cow position:
               
chr21:37235591-37235364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
14, 170
               

               
Conread position:
               
131-363
               

               
Cow position:
               
chr21:26753696-26753469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
34, 173
               

               
Conread position:
               
131-440
               

               
Cow position:
               
chr21:9939984-9940297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 36
               

               
Conread position:
               
131-462
               

               
Cow position:
               
chr21:12301306-12301632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
17, 218
               

               
Conread position:
               
131-485
               

               
Cow position:
               
chr21:10823764-10823402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 132
               

               
Conread position:
               
131-489
               

               
Cow position:
               
chr21:34740050-34739691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 224
               

               
Conread position:
               
131-500
               

               
Cow position:
               
chr21:23800923-23801288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 159
               

               
Conread position:
               
131-500
               

               
Cow position:
               
chr21:25800605-25800242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
131-500
               

               
Cow position:
               
chr21:38121302-38120941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 14
               

               
Conread position:
               
131-500
               

               
Cow position:
               
chr21:45356039-45355670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 158
               

               
Conread position:
               
132-296
               

               
Cow position:
               
chr21:7681301-7681138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
32, 64
               

               
Conread position:
               
132-500
               

               
Cow position:
               
chr21:3254356-3254000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
133-499
               

               
Cow position:
               
chr21:23321876-23322249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
253, 165
               

               
Conread position:
               
134-362
               

               
Cow position:
               
chr21:19874152-19874379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
136-292
               

               
Cow position:
               
chr21:26567578-26567735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
15, 124
               

               
Conread position:
               
136-296
               

               
Cow position:
               
chr21:13164060-13163898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
136-299
               

               
Cow position:
               
chr21:46470382-46470222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
136-316
               

               
Cow position:
               
chr21:42463495-42463669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 99
               

               
Conread position:
               
136-326
               

               
Cow position:
               
chr21:19359977-19360167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
175, 166
               

               
Conread position:
               
136-357
               

               
Cow position:
               
chr21:17265801-17266021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
74, 42
               

               
Conread position:
               
136-368
               

               
Cow position:
               
chr21:734788-734564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
136-374
               

               
Cow position:
               
chr21:471873-471639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
136-419
               

               
Cow position:
               
chr21:30256075-30256350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
258, 77
               

               
Conread position:
               
136-465
               

               
Cow position:
               
chr21:10538056-10538394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 157
               

               
Conread position:
               
136-479
               

               
Cow position:
               
chr21:19674005-19673669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 91
               

               
Conread position:
               
136-480
               

               
Cow position:
               
chr21:16696574-16696222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 158
               

               
Conread position:
               
136-488
               

               
Cow position:
               
chr21:24642711-24642364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 57
               

               
Conread position:
               
136-488
               

               
Cow position:
               
chr21:26245113-26244777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
136-498
               

               
Cow position:
               
chr21:46264369-46264012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 134
               

               
Conread position:
               
136-500
               

               
Cow position:
               
chr21:18790367-18790722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
136-500
               

               
Cow position:
               
chr21:33350940-33350576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 150
               

               
Conread position:
               
136-500
               

               
Cow position:
               
chr21:33563204-33562849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
137-298
               

               
Cow position:
               
chr21:22939968-22939804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
137-472
               

               
Cow position:
               
chr21:28924306-28923978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 26
               

               
Conread position:
               
137-489
               

               
Cow position:
               
chr21:10633441-10633796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
137-491
               

               
Cow position:
               
chr21:2927007-2927364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 63
               

               
Conread position:
               
137-500
               

               
Cow position:
               
chr21:36297690-36297312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
138-300
               

               
Cow position:
               
chr21:44592013-44592174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
138-394
               

               
Cow position:
               
chr21:43259416-43259166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
42, 56
               

               
Conread position:
               
138-446
               

               
Cow position:
               
chr21:30250009-30250298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
138-486
               

               
Cow position:
               
chr21:11456604-11456962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 121
               

               
Conread position:
               
138-500
               

               
Cow position:
               
chr21:41598006-41597649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
283, 24
               

               
Conread position:
               
138-501
               

               
Cow position:
               
chr21:42384704-42384338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 26
               

               
Conread position:
               
139-284
               

               
Cow position:
               
chr21:8978641-8978500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
139-416
               

               
Cow position:
               
chr21:27429647-27429388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 14
               

               
Conread position:
               
139-436
               

               
Cow position:
               
chr21:40168428-40168728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 97
               

               
Conread position:
               
140-449
               

               
Cow position:
               
chr21:2658004-2657704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
163, 175
               

               
Conread position:
               
140-493
               

               
Cow position:
               
chr21:17723208-17722865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
28, 16
               

               
Conread position:
               
140-500
               

               
Cow position:
               
chr21:29485173-29484817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 93
               

               
Conread position:
               
140-500
               

               
Cow position:
               
chr21:36795798-36795437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 254
               

               
Conread position:
               
143-435
               

               
Cow position:
               
chr21:17009174-17008884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 33
               

               
Conread position:
               
144-433
               

               
Cow position:
               
chr21:8527294-8527572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
242, 20
               

               
Conread position:
               
144-482
               

               
Cow position:
               
chr21:35569173-35569521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
84, 182
               

               
Conread position:
               
144-500
               

               
Cow position:
               
chr21:21223472-21223123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
155, 76
               

               
Conread position:
               
144-500
               

               
Cow position:
               
chr21:35897436-35897792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 23
               

               
Conread position:
               
145-500
               

               
Cow position:
               
chr21:15976822-15976475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
145-500
               

               
Cow position:
               
chr21:28989804-28989446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
146-330
               

               
Cow position:
               
chr21:40769481-40769296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
157, 7
               

               
Conread position:
               
148-300
               

               
Cow position:
               
chr21:46451767-46451917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
116, 98
               

               
Conread position:
               
149-332
               

               
Cow position:
               
chr21:41827970-41828162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
11, 157
               

               
Conread position:
               
150-306
               

               
Cow position:
               
chr21:42562813-42562661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
9, 88
               

               
Conread position:
               
150-492
               

               
Cow position:
               
chr21:713130-712776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 257
               

               
Conread position:
               
150-498
               

               
Cow position:
               
chr21:31691667-31691314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 76
               

               
Conread position:
               
150-500
               

               
Cow position:
               
chr21:10151990-10151628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
150-500
               

               
Cow position:
               
chr21:30606911-30607254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 41
               

               
Conread position:
               
150-500
               

               
Cow position:
               
chr21:42348511-42348844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
289, 20
               

               
Conread position:
               
151-462
               

               
Cow position:
               
chr21:2809981-2810272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
79, 15
               

               
Conread position:
               
151-472
               

               
Cow position:
               
chr21:11360210-11359899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 49
               

               
Conread position:
               
151-492
               

               
Cow position:
               
chr21:25383210-25382851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 251
               

               
Conread position:
               
151-500
               

               
Cow position:
               
chr21:10118750-10118387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 131
               

               
Conread position:
               
155-500
               

               
Cow position:
               
chr21:33210368-33210032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
278, 135
               

               
Conread position:
               
156-449
               

               
Cow position:
               
chr21:25628733-25629027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
251, 41
               

               
Conread position:
               
156-493
               

               
Cow position:
               
chr21:45920880-45921218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
248, 18
               

               
Conread position:
               
156-500
               

               
Cow position:
               
chr21:724712-725058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 35
               

               
Conread position:
               
156-500
               

               
Cow position:
               
chr21:13365521-13365178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 94
               

               
Conread position:
               
156-500
               

               
Cow position:
               
chr21:44671923-44671587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
156-501
               

               
Cow position:
               
chr21:28626416-28626074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 82
               

               
Conread position:
               
157-310
               

               
Cow position:
               
chr21:17063099-17062949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
157-451
               

               
Cow position:
               
chr21:46551924-46552217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
33, 236
               

               
Conread position:
               
157-470
               

               
Cow position:
               
chr21:12723328-12723020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
262, 9
               

               
Conread position:
               
157-485
               

               
Cow position:
               
chr21:46607416-46607735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
141, 29
               

               
Conread position:
               
157-487
               

               
Cow position:
               
chr21:23786209-23785876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
157-489
               

               
Cow position:
               
chr21:25286691-25286354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
135, 34
               

               
Conread position:
               
157-499
               

               
Cow position:
               
chr21:4099047-4098710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
144, 81
               

               
Conread position:
               
158-282
               

               
Cow position:
               
chr21:8686966-8687090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
158-343
               

               
Cow position:
               
chr21:9334665-9334477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 74
               

               
Conread position:
               
158-385
               

               
Cow position:
               
chr21:27081221-27080992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
17, 78
               

               
Conread position:
               
158-400
               

               
Cow position:
               
chr21:6758520-6758284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
158-424
               

               
Cow position:
               
chr21:3400655-3400920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
117, 70
               

               
Conread position:
               
158-447
               

               
Cow position:
               
chr21:21077777-21077493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
144, 77
               

               
Conread position:
               
158-484
               

               
Cow position:
               
chr21:18779799-18780123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 102
               

               
Conread position:
               
158-495
               

               
Cow position:
               
chr21:18951534-18951196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 157
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:396044-395709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:5153797-5153451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 12
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:5567163-5566823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
236, 86
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:7581728-7582076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 145
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:10001252-10000914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:27341418-27341763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 82
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:28810085-28810429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 40
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr21:45473581-45473923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
224, 145
               

               
Conread position:
               
158-501
               

               
Cow position:
               
chr21:3818385-3818049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 35
               

               
Conread position:
               
159-296
               

               
Cow position:
               
chr21:38440435-38440298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
159-326
               

               
Cow position:
               
chr21:7584026-7583856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
160-371
               

               
Cow position:
               
chr21:44860944-44861146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
169, 74
               

               
Conread position:
               
160-489
               

               
Cow position:
               
chr21:1591722-1591393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
160-500
               

               
Cow position:
               
chr21:42413922-42414269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 207
               

               
Conread position:
               
161-315
               

               
Cow position:
               
chr21:7823538-7823381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
30, 54
               

               
Conread position:
               
161-373
               

               
Cow position:
               
chr21:40192131-40192339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
206, 9
               

               
Conread position:
               
161-395
               

               
Cow position:
               
chr21:38267888-38268098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
161-498
               

               
Cow position:
               
chr21:37344927-37345266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 109
               

               
Conread position:
               
161-500
               

               
Cow position:
               
chr21:8235388-8235711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 79
               

               
Conread position:
               
162-296
               

               
Cow position:
               
chr21:12207629-12207763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
163-414
               

               
Cow position:
               
chr21:44214298-44214048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
143, 73
               

               
Conread position:
               
165-500
               

               
Cow position:
               
chr21:28955671-28955356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 47
               

               
Conread position:
               
166-290
               

               
Cow position:
               
chr21:35647659-35647783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
166-351
               

               
Cow position:
               
chr21:13036737-13036915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
166-469
               

               
Cow position:
               
chr21:20260150-20260456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
135, 152
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr21:15911569-15911234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 72
               

               
Conread position:
               
166-500
               

               
Cow position:
               
chr21:45915549-45915870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
253, 70
               

               
Conread position:
               
167-368
               

               
Cow position:
               
chr21:42209461-42209663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
167-486
               

               
Cow position:
               
chr21:32237447-32237145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 74
               

               
Conread position:
               
167-491
               

               
Cow position:
               
chr21:8125637-8125957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
140, 86
               

               
Conread position:
               
167-492
               

               
Cow position:
               
chr21:13717696-13718017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
131, 64
               

               
Conread position:
               
167-500
               

               
Cow position:
               
chr21:2679716-2679386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
130, 10
               

               
Conread position:
               
167-500
               

               
Cow position:
               
chr21:30990119-30990435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 67
               

               
Conread position:
               
169-331
               

               
Cow position:
               
chr21:23460299-23460145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
169-435
               

               
Cow position:
               
chr21:36789962-36789700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 202
               

               
Conread position:
               
170-300
               

               
Cow position:
               
chr21:8231513-8231642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
170-492
               

               
Cow position:
               
chr21:17709986-17709668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
128, 61
               

               
Conread position:
               
171-499
               

               
Cow position:
               
chr21:18850059-18850384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
8, 217
               

               
Conread position:
               
173-361
               

               
Cow position:
               
chr21:20183233-20183044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
171, 129
               

               
Conread position:
               
173-500
               

               
Cow position:
               
chr21:33729592-33729268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 141
               

               
Conread position:
               
174-486
               

               
Cow position:
               
chr21:47729860-47730171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
174-492
               

               
Cow position:
               
chr21:4998334-4998645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 88
               

               
Conread position:
               
175-477
               

               
Cow position:
               
chr21:33392220-33391919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
8, 192
               

               
Conread position:
               
177-462
               

               
Cow position:
               
chr21:20193052-20192774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
179-492
               

               
Cow position:
               
chr21:20044608-20044932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 169
               

               
Conread position:
               
180-492
               

               
Cow position:
               
chr21:39401745-39401436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 37
               

               
Conread position:
               
180-499
               

               
Cow position:
               
chr21:13738707-13738403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
252, 13
               

               
Conread position:
               
180-499
               

               
Cow position:
               
chr21:18940426-18940726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
149, 13
               

               
Conread position:
               
182-500
               

               
Cow position:
               
chr21:4723633-4723313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
183-343
               

               
Cow position:
               
chr21:29405069-29405222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
184-436
               

               
Cow position:
               
chr21:20418531-20418783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 208
               

               
Conread position:
               
184-492
               

               
Cow position:
               
chr21:15611291-15610993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
113, 54
               

               
Conread position:
               
184-500
               

               
Cow position:
               
chr21:19363309-19363630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 11
               

               
Conread position:
               
184-500
               

               
Cow position:
               
chr21:24888149-24887842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
245, 14
               

               
Conread position:
               
184-500
               

               
Cow position:
               
chr21:34160105-34159793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
184-500
               

               
Cow position:
               
chr21:41878620-41878310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
184-500
               

               
Cow position:
               
chr21:45330456-45330774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 54
               

               
Conread position:
               
185-480
               

               
Cow position:
               
chr21:16187657-16187952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 154
               

               
Conread position:
               
185-501
               

               
Cow position:
               
chr21:33727309-33727628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 210
               

               
Conread position:
               
186-405
               

               
Cow position:
               
chr21:17929688-17929909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
208, 0
               

               
Conread position:
               
186-492
               

               
Cow position:
               
chr21:34390826-34391129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
187-401
               

               
Cow position:
               
chr21:297902-297689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
124, 115
               

               
Conread position:
               
187-492
               

               
Cow position:
               
chr21:43357108-43357419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 63
               

               
Conread position:
               
189-491
               

               
Cow position:
               
chr21:4080494-4080196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
200, 107
               

               
Conread position:
               
194-474
               

               
Cow position:
               
chr21:11251010-11250725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 44
               

               
Conread position:
               
196-499
               

               
Cow position:
               
chr21:38867448-38867741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
18, 103
               

               
Conread position:
               
198-500
               

               
Cow position:
               
chr21:4904830-4905138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
188, 99
               

               
Conread position:
               
198-500
               

               
Cow position:
               
chr21:7564170-7564488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 302
               

               
Conread position:
               
199-500
               

               
Cow position:
               
chr21:44515400-44515108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 160
               

               
Conread position:
               
203-495
               

               
Cow position:
               
chr21:32455036-32454740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
106, 47
               

               
Conread position:
               
203-500
               

               
Cow position:
               
chr21:13488659-13488353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
69, 191
               

               
Conread position:
               
205-500
               

               
Cow position:
               
chr21:46144089-46143777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
187, 0
               

               
Conread position:
               
207-477
               

               
Cow position:
               
chr21:18415180-18414913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
207-500
               

               
Cow position:
               
chr21:5636592-5636887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 96
               

               
Conread position:
               
208-426
               

               
Cow position:
               
chr21:11198021-11198237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
63, 96
               

               
Conread position:
               
208-500
               

               
Cow position:
               
chr21:10601248-10601535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
96, 140
               

               
Conread position:
               
208-500
               

               
Cow position:
               
chr21:28512641-28512366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 77
               

               
Conread position:
               
209-414
               

               
Cow position:
               
chr21:33359917-33360110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
90, 11
               

               
Conread position:
               
209-435
               

               
Cow position:
               
chr21:38664765-38664541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
92, 138
               

               
Conread position:
               
209-447
               

               
Cow position:
               
chr21:17856670-17856439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
100, 168
               

               
Conread position:
               
210-457
               

               
Cow position:
               
chr21:8452010-8451771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
197, 30
               

               
Conread position:
               
211-389
               

               
Cow position:
               
chr21:9302303-9302480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
213-499
               

               
Cow position:
               
chr21:43240988-43240693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
215-490
               

               
Cow position:
               
chr21:10727397-10727124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 86
               

               
Conread position:
               
215-500
               

               
Cow position:
               
chr21:36162839-36163129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 107
               

               
Conread position:
               
217-420
               

               
Cow position:
               
chr21:37014288-37014485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
218-500
               

               
Cow position:
               
chr21:24222420-24222704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 168
               

               
Conread position:
               
219-419
               

               
Cow position:
               
chr21:13495659-13495459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
221-446
               

               
Cow position:
               
chr21:11151824-11151604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
184, 112
               

               
Conread position:
               
221-500
               

               
Cow position:
               
chr21:24607500-24607219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 89
               

               
Conread position:
               
221-500
               

               
Cow position:
               
chr21:48263248-48262965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
222-389
               

               
Cow position:
               
chr21:46463632-46463468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
103, 23
               

               
Conread position:
               
223-490
               

               
Cow position:
               
chr21:17175255-17174988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 15
               

               
Conread position:
               
224-480
               

               
Cow position:
               
chr21:18041736-18041989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 91
               

               
Conread position:
               
224-492
               

               
Cow position:
               
chr21:12960786-12961061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
227-498
               

               
Cow position:
               
chr21:17707557-17707275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 24
               

               
Conread position:
               
227-498
               

               
Cow position:
               
chr21:28882246-28881978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 14
               

               
Conread position:
               
230-492
               

               
Cow position:
               
chr21:44410-44150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 169
               

               
Conread position:
               
231-392
               

               
Cow position:
               
chr21:5612212-5612053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
231-491
               

               
Cow position:
               
chr21:45439132-45439407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
231-500
               

               
Cow position:
               
chr21:30150159-30150432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
45, 92
               

               
Conread position:
               
231-500
               

               
Cow position:
               
chr21:32536081-32535810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
232-492
               

               
Cow position:
               
chr21:3380975-3381240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 163
               

               
Conread position:
               
234-500
               

               
Cow position:
               
chr21:24765381-24765117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
185, 15
               

               
Conread position:
               
235-500
               

               
Cow position:
               
chr21:19977435-19977165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
69, 161
               

               
Conread position:
               
237-487
               

               
Cow position:
               
chr21:23499726-23499976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
72, 132
               

               
Conread position:
               
240-460
               

               
Cow position:
               
chr21:5985223-5985439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
240-489
               

               
Cow position:
               
chr21:5597247-5596991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 127
               

               
Conread position:
               
240-498
               

               
Cow position:
               
chr21:6102166-6102431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
169, 64
               

               
Conread position:
               
240-500
               

               
Cow position:
               
chr21:17674138-17674402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
126, 21
               

               
Conread position:
               
241-492
               

               
Cow position:
               
chr21:3813389-3813641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 104
               

               
Conread position:
               
241-499
               

               
Cow position:
               
chr21:6764606-6764867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
63, 79
               

               
Conread position:
               
242-500
               

               
Cow position:
               
chr21:20925410-20925673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 25
               

               
Conread position:
               
243-403
               

               
Cow position:
               
chr21:22720320-22720162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
62, 117
               

               
Conread position:
               
243-410
               

               
Cow position:
               
chr21:34727143-34727312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr21:13519282-13519086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
243-447
               

               
Cow position:
               
chr21:34722696-34722894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
243-500
               

               
Cow position:
               
chr21:47802167-47802426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 80
               

               
Conread position:
               
244-498
               

               
Cow position:
               
chr21:45867025-45866772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
60, 159
               

               
Conread position:
               
244-499
               

               
Cow position:
               
chr21:5344757-5344490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
54, 47
               

               
Conread position:
               
245-490
               

               
Cow position:
               
chr21:5454901-5455144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 57
               

               
Conread position:
               
245-491
               

               
Cow position:
               
chr21:39450071-39450326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
245-499
               

               
Cow position:
               
chr21:31277900-31277656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
144, 42
               

               
Conread position:
               
245-500
               

               
Cow position:
               
chr21:9847920-9848160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 46
               

               
Conread position:
               
246-472
               

               
Cow position:
               
chr21:2294072-2293854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
248-492
               

               
Cow position:
               
chr21:1464317-1464070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
248-498
               

               
Cow position:
               
chr21:18783601-18783848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
171, 54
               

               
Conread position:
               
249-492
               

               
Cow position:
               
chr21:3047763-3047526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
171, 121
               

               
Conread position:
               
249-500
               

               
Cow position:
               
chr21:41957093-41957340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
193, 17
               

               
Conread position:
               
250-441
               

               
Cow position:
               
chr21:29224775-29224965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
139, 54
               

               
Conread position:
               
250-452
               

               
Cow position:
               
chr21:42131509-42131715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
250-499
               

               
Cow position:
               
chr21:13898273-13898023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 143
               

               
Conread position:
               
250-500
               

               
Cow position:
               
chr21:16612710-16612463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
66, 53
               

               
Conread position:
               
250-501
               

               
Cow position:
               
chr21:44109088-44108840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 95
               

               
Conread position:
               
251-470
               

               
Cow position:
               
chr21:34737114-34736894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
135, 46
               

               
Conread position:
               
251-499
               

               
Cow position:
               
chr21:9873043-9872802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 16
               

               
Conread position:
               
251-500
               

               
Cow position:
               
chr21:8985636-8985383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
251-500
               

               
Cow position:
               
chr21:23192428-23192684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 140
               

               
Conread position:
               
254-442
               

               
Cow position:
               
chr21:41514890-41514700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
255-489
               

               
Cow position:
               
chr21:2785696-2785935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
178, 77
               

               
Conread position:
               
255-491
               

               
Cow position:
               
chr21:28617671-28617433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 218
               

               
Conread position:
               
257-499
               

               
Cow position:
               
chr21:42913665-42913911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
258-500
               

               
Cow position:
               
chr21:31676576-31676332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 70
               

               
Conread position:
               
259-371
               

               
Cow position:
               
chr21:46627124-46627012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
261-498
               

               
Cow position:
               
chr21:17714394-17714149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
11, 107
               

               
Conread position:
               
261-499
               

               
Cow position:
               
chr21:21480110-21480348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
172, 37
               

               
Conread position:
               
262-441
               

               
Cow position:
               
chr21:9979897-9980067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
263-462
               

               
Cow position:
               
chr21:4568357-4568160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
191, 108
               

               
Conread position:
               
263-486
               

               
Cow position:
               
chr21:48176896-48176674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
155, 30
               

               
Conread position:
               
263-491
               

               
Cow position:
               
chr21:18935822-18935600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
168, 15
               

               
Conread position:
               
263-495
               

               
Cow position:
               
chr21:42190099-42190330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 160
               

               
Conread position:
               
263-498
               

               
Cow position:
               
chr21:9862570-9862789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
263-498
               

               
Cow position:
               
chr21:21967540-21967317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
263-499
               

               
Cow position:
               
chr21:26829189-26829411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 36
               

               
Conread position:
               
264-500
               

               
Cow position:
               
chr21:34835358-34835589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
265-492
               

               
Cow position:
               
chr21:36793965-36793734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
33, 146
               

               
Conread position:
               
265-496
               

               
Cow position:
               
chr21:42905301-42905540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
36, 116
               

               
Conread position:
               
266-486
               

               
Cow position:
               
chr21:16910130-16909906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
163, 36
               

               
Conread position:
               
266-498
               

               
Cow position:
               
chr21:17412226-17412456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
266-500
               

               
Cow position:
               
chr21:27743818-27743576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 212
               

               
Conread position:
               
268-416
               

               
Cow position:
               
chr21:7391210-7391357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
135, 36
               

               
Conread position:
               
268-471
               

               
Cow position:
               
chr21:39809961-39809762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
154, 36
               

               
Conread position:
               
268-501
               

               
Cow position:
               
chr21:911899-912134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 122
               

               
Conread position:
               
269-491
               

               
Cow position:
               
chr21:17302313-17302533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 28
               

               
Conread position:
               
269-500
               

               
Cow position:
               
chr21:40244511-40244268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
12, 126
               

               
Conread position:
               
269-500
               

               
Cow position:
               
chr21:42145985-42145751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
270-485
               

               
Cow position:
               
chr21:49662056-49662268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
271-492
               

               
Cow position:
               
chr21:18495036-18494807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
271-500
               

               
Cow position:
               
chr21:28443309-28443544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
40, 68
               

               
Conread position:
               
272-389
               

               
Cow position:
               
chr21:14228504-14228623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
272-500
               

               
Cow position:
               
chr21:24795971-24796204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 122
               

               
Conread position:
               
274-461
               

               
Cow position:
               
chr21:42343649-42343456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
275-436
               

               
Cow position:
               
chr21:43368106-43367946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
114, 16
               

               
Conread position:
               
276-447
               

               
Cow position:
               
chr21:21143960-21143793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
278-488
               

               
Cow position:
               
chr21:40058864-40058651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
41, 106
               

               
Conread position:
               
283-488
               

               
Cow position:
               
chr21:10608400-10608609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
15, 8
               

               
Conread position:
               
286-500
               

               
Cow position:
               
chr21:42024171-42023958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
129, 42
               

               
Conread position:
               
288-441
               

               
Cow position:
               
chr21:46470016-46469866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
142, 16
               

               
Conread position:
               
292-500
               

               
Cow position:
               
chr21:37361430-37361634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
293-492
               

               
Cow position:
               
chr21:394062-393863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
144, 65
               

               
Conread position:
               
293-492
               

               
Cow position:
               
chr21:17434276-17434479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
138, 9
               

               
Conread position:
               
304-499
               

               
Cow position:
               
chr21:48484415-48484609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 119
               

               
Conread position:
               
305-490
               

               
Cow position:
               
chr21:31511317-31511137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
133, 85
               

               
Conread position:
               
307-457
               

               
Cow position:
               
chr21:949648-949792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr21:9278410-9278206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr21:4268904-4268707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr21:34738638-34738432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
308-500
               

               
Cow position:
               
chr21:45375650-45375449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
119, 81
               

               
Conread position:
               
309-472
               

               
Cow position:
               
chr21:12640364-12640195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
311-499
               

               
Cow position:
               
chr21:9998692-9998886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
122, 155
               

               
Conread position:
               
316-430
               

               
Cow position:
               
chr21:15200823-15200712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
73, 52
               

               
Conread position:
               
321-500
               

               
Cow position:
               
chr21:33419708-33419881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
69, 24
               

               
Conread position:
               
321-501
               

               
Cow position:
               
chr21:6765895-6765713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
323-500
               

               
Cow position:
               
chr21:13303832-13303653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
66, 22
               

               
Conread position:
               
325-500
               

               
Cow position:
               
chr21:13395563-13395389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 23
               

               
Conread position:
               
325-500
               

               
Cow position:
               
chr21:40065303-40065479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 113
               

               
Conread position:
               
338-491
               

               
Cow position:
               
chr21:13163889-13163733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
338-500
               

               
Cow position:
               
chr21:49353199-49353035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
78, 6
               

               
Conread position:
               
349-500
               

               
Cow position:
               
chr21:31159250-31159090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
353-500
               

               
Cow position:
               
chr21:17282688-17282537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
359-500
               

               
Cow position:
               
chr21:9334283-9334425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
73, 0
               
Show alignments to all cow chromosomes.