Cow genome map
| Conread name: | gvo-UMC-pgvo4-014-d12 |
| Conread position: | 87-329 |
| Cow position: | chr1:55118007-55117763 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 87-329 |
| Cow position: | chr1:78027600-78027839 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 9 |
| Conread position: | 88-327 |
| Cow position: | chr1:5655184-5655419 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 92-324 |
| Cow position: | chr1:87757327-87757549 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 92-324 |
| Cow position: | chr1:88768106-88767885 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 94-317 |
| Cow position: | chr1:94374838-94375052 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 94-329 |
| Cow position: | chr1:29099634-29099869 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 95-275 |
| Cow position: | chr1:32496446-32496268 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 97-261 |
| Cow position: | chr1:15982908-15983067 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 97-275 |
| Cow position: | chr1:11335835-11336013 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 66, 162 |
| Conread position: | 97-289 |
| Cow position: | chr1:33881231-33881039 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 8, 12 |
| Conread position: | 97-327 |
| Cow position: | chr1:48321362-48321582 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 136, 39 |
| Conread position: | 97-327 |
| Cow position: | chr1:91026281-91026063 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 98-281 |
| Cow position: | chr1:35434967-35434784 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 98-319 |
| Cow position: | chr1:57266903-57267118 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 38 |
| Conread position: | 98-327 |
| Cow position: | chr1:32501389-32501163 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 98-329 |
| Cow position: | chr1:32284916-32284696 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 98-329 |
| Cow position: | chr1:80315317-80315090 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 103-327 |
| Cow position: | chr1:98412795-98413013 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 107-327 |
| Cow position: | chr1:75185167-75184951 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 108-266 |
| Cow position: | chr1:55120231-55120381 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 108-280 |
| Cow position: | chr1:76596321-76596149 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 108-327 |
| Cow position: | chr1:98879775-98879994 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 108-330 |
| Cow position: | chr1:79839484-79839695 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 110-281 |
| Cow position: | chr1:57083944-57084110 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 113-327 |
| Cow position: | chr1:32965097-32964883 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 114-317 |
| Cow position: | chr1:101440926-101441124 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 116-327 |
| Cow position: | chr1:638422-638208 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 133, 64 |
| Conread position: | 118-327 |
| Cow position: | chr1:89776624-89776829 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 124-280 |
| Cow position: | chr1:23297821-23297669 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 129-325 |
| Cow position: | chr1:83120859-83120667 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 115, 50 |
| Conread position: | 138-288 |
| Cow position: | chr1:74766608-74766459 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 140-312 |
| Cow position: | chr1:64752987-64752818 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 156-307 |
| Cow position: | chr1:95063761-95063613 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 164-328 |
| Cow position: | chr1:100140506-100140339 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 176-327 |
| Cow position: | chr1:17634855-17635008 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 183-327 |
| Cow position: | chr1:81642043-81642186 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 109, 66 |
| Conread position: | 185-326 |
| Cow position: | chr1:30086250-30086388 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 188-340 |
| Cow position: | chr1:77942715-77942866 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 202-332 |
| Cow position: | chr1:47365397-47365267 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 206-351 |
| Cow position: | chr1:29107365-29107507 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 222-326 |
| Cow position: | chr1:16523671-16523567 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.