Cow genome map
| Conread name: | mA2-MI-P-A2-acq-g-11-1-UM.s1 |
| Conread position: | 2-327 |
| Cow position: | chr1:67603842-67604179 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 3-173 |
| Cow position: | chr1:98426063-98425884 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 3-190 |
| Cow position: | chr1:29888703-29888901 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-275 |
| Cow position: | chr1:13695319-13695036 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 3-327 |
| Cow position: | chr1:2758545-2758217 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 46, 107 |
| Conread position: | 3-327 |
| Cow position: | chr1:101623225-101622893 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 285 |
| Conread position: | 4-252 |
| Cow position: | chr1:87115072-87114812 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 82 |
| Conread position: | 4-285 |
| Cow position: | chr1:14026070-14025777 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 139 |
| Conread position: | 5-164 |
| Cow position: | chr1:72172622-72172454 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 5-326 |
| Cow position: | chr1:80172600-80172268 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 229 |
| Conread position: | 5-328 |
| Cow position: | chr1:35429809-35429489 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 6-164 |
| Cow position: | chr1:90971013-90970846 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 6-168 |
| Cow position: | chr1:83643077-83643249 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 7-292 |
| Cow position: | chr1:71242338-71242630 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 42, 116 |
| Conread position: | 12-328 |
| Cow position: | chr1:102411117-102410791 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 181 |
| Conread position: | 16-190 |
| Cow position: | chr1:92072453-92072640 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 17-164 |
| Cow position: | chr1:58146294-58146450 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 126 |
| Conread position: | 24-330 |
| Cow position: | chr1:80313770-80314077 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 87, 112 |
| Conread position: | 28-243 |
| Cow position: | chr1:81534014-81533795 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 33-327 |
| Cow position: | chr1:95305290-95305587 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 246 |
| Conread position: | 48-281 |
| Cow position: | chr1:3327681-3327918 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 200 |
| Conread position: | 48-316 |
| Cow position: | chr1:7452616-7452344 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 232 |
| Conread position: | 48-316 |
| Cow position: | chr1:49051548-49051828 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 48-327 |
| Cow position: | chr1:26910981-26910700 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 48-327 |
| Cow position: | chr1:68929301-68929018 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 48-327 |
| Cow position: | chr1:98409531-98409249 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 63, 231 |
| Conread position: | 48-328 |
| Cow position: | chr1:27939839-27939557 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 24, 80 |
| Conread position: | 48-328 |
| Cow position: | chr1:90041763-90042045 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 20 |
| Conread position: | 48-329 |
| Cow position: | chr1:1923826-1924112 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 84-294 |
| Cow position: | chr1:16538330-16538541 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 103 |
| Conread position: | 118-327 |
| Cow position: | chr1:23298631-23298414 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 129-325 |
| Cow position: | chr1:16532345-16532543 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 148 |
| Conread position: | 134-301 |
| Cow position: | chr1:81648812-81648977 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 134-328 |
| Cow position: | chr1:97473265-97473459 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 165-327 |
| Cow position: | chr1:98425681-98425521 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 169-333 |
| Cow position: | chr1:97721695-97721859 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-327 |
| Cow position: | chr1:32967397-32967546 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-326 |
| Cow position: | chr1:30069088-30068947 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 192-325 |
| Cow position: | chr1:36076672-36076803 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 223-327 |
| Cow position: | chr1:78561439-78561338 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.