Cow genome map
| Conread name: | mA2-MI-P-A2-acq-g-11-1-UM.s1 |
| Conread position: | 1-169 |
| Cow position: | chr11:13056155-13056330 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 48, 113 |
| Conread position: | 1-321 |
| Cow position: | chr11:49608199-49608506 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 47, 66 |
| Conread position: | 1-328 |
| Cow position: | chr11:41534907-41535237 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 272 |
| Conread position: | 1-328 |
| Cow position: | chr11:63668499-63668832 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 117 |
| Conread position: | 2-315 |
| Cow position: | chr11:30129886-30130211 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 75 |
| Conread position: | 2-327 |
| Cow position: | chr11:62186796-62187133 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 286 |
| Conread position: | 2-327 |
| Cow position: | chr11:66492000-66492330 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 128 |
| Conread position: | 2-328 |
| Cow position: | chr11:9348969-9348644 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 3-199 |
| Cow position: | chr11:1045145-1045357 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-308 |
| Cow position: | chr11:2609990-2610286 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 3-316 |
| Cow position: | chr11:82532045-82532373 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 41 |
| Conread position: | 3-327 |
| Cow position: | chr11:8100425-8100748 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 3-327 |
| Cow position: | chr11:12336969-12336634 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 279 |
| Conread position: | 3-327 |
| Cow position: | chr11:37329420-37329755 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 3-327 |
| Cow position: | chr11:37710207-37709868 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 46, 281 |
| Conread position: | 3-328 |
| Cow position: | chr11:10135131-10135461 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 267 |
| Conread position: | 3-329 |
| Cow position: | chr11:45900094-45900432 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 212 |
| Conread position: | 4-164 |
| Cow position: | chr11:34679981-34679812 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 126 |
| Conread position: | 5-164 |
| Cow position: | chr11:61183133-61182965 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 44, 138 |
| Conread position: | 5-245 |
| Cow position: | chr11:2536543-2536795 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 44, 75 |
| Conread position: | 5-308 |
| Cow position: | chr11:62649244-62648932 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 31, 163 |
| Conread position: | 5-327 |
| Cow position: | chr11:4158695-4158371 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 176 |
| Conread position: | 5-327 |
| Cow position: | chr11:21797540-21797207 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 233 |
| Conread position: | 5-328 |
| Cow position: | chr11:19684715-19685046 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 6-168 |
| Cow position: | chr11:23051283-23051454 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 6-169 |
| Cow position: | chr11:78471769-78471941 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 7-293 |
| Cow position: | chr11:38109104-38109404 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 56, 100 |
| Conread position: | 11-191 |
| Cow position: | chr11:24964193-24964001 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 15-257 |
| Cow position: | chr11:35943067-35942818 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 15-339 |
| Cow position: | chr11:63674832-63675165 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 25-248 |
| Cow position: | chr11:41700500-41700267 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 33-169 |
| Cow position: | chr11:16295739-16295876 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 102 |
| Conread position: | 48-317 |
| Cow position: | chr11:12369566-12369297 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 81, 58 |
| Conread position: | 48-319 |
| Cow position: | chr11:31608904-31609155 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 48-327 |
| Cow position: | chr11:4660650-4660929 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 48-327 |
| Cow position: | chr11:35367349-35367627 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 165 |
| Conread position: | 50-315 |
| Cow position: | chr11:36261191-36260921 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 63-327 |
| Cow position: | chr11:35101842-35102110 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 94 |
| Conread position: | 135-272 |
| Cow position: | chr11:64366129-64366266 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 169-316 |
| Cow position: | chr11:40496323-40496179 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 176-326 |
| Cow position: | chr11:23493722-23493573 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 184-327 |
| Cow position: | chr11:24963765-24963624 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 193-335 |
| Cow position: | chr11:81719465-81719604 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.