Cow genome map
| Conread name: | mA2-MI-P-A2-acq-g-11-1-UM.s1 |
| Conread position: | 1-173 |
| Cow position: | chr5:47438746-47438562 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1-281 |
| Cow position: | chr5:38590574-38590289 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 3-169 |
| Cow position: | chr5:52001713-52001887 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-325 |
| Cow position: | chr5:43094719-43095053 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 255 |
| Conread position: | 3-327 |
| Cow position: | chr5:10037926-10038267 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 3-327 |
| Cow position: | chr5:44648441-44648107 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 3-332 |
| Cow position: | chr5:68086875-68087215 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 3-333 |
| Cow position: | chr5:14053142-14053478 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 94 |
| Conread position: | 3-340 |
| Cow position: | chr5:5918794-5918451 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 3-340 |
| Cow position: | chr5:34502847-34503188 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 168 |
| Conread position: | 5-327 |
| Cow position: | chr5:65206508-65206837 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 218 |
| Conread position: | 5-328 |
| Cow position: | chr5:15754418-15754752 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 94 |
| Conread position: | 6-326 |
| Cow position: | chr5:47961605-47961281 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 42, 214 |
| Conread position: | 6-328 |
| Cow position: | chr5:12550345-12550678 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 228 |
| Conread position: | 7-271 |
| Cow position: | chr5:11671021-11671289 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 7-317 |
| Cow position: | chr5:75451055-75451379 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 228 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 9-322 |
| Cow position: | chr5:52404137-52404473 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 19, 137 |
| Conread position: | 48-169 |
| Cow position: | chr5:35332922-35333044 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 64, 87 |
| Conread position: | 48-214 |
| Cow position: | chr5:44113682-44113517 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 118, 56 |
| Conread position: | 48-240 |
| Cow position: | chr5:60216013-60216209 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 48-270 |
| Cow position: | chr5:58350264-58350491 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 68, 15 |
| Conread position: | 48-301 |
| Cow position: | chr5:56810904-56810640 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 67, 183 |
| Conread position: | 48-313 |
| Cow position: | chr5:7797096-7796832 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 170 |
| Conread position: | 48-340 |
| Cow position: | chr5:69711311-69711607 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 231 |
| Conread position: | 51-331 |
| Cow position: | chr5:2216867-2217144 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 81 |
| Conread position: | 107-316 |
| Cow position: | chr5:44536334-44536545 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 64, 143 |
| Conread position: | 121-342 |
| Cow position: | chr5:35334491-35334709 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 130-328 |
| Cow position: | chr5:2023712-2023512 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 134-329 |
| Cow position: | chr5:62032604-62032411 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 147, 42 |
| Conread position: | 172-327 |
| Cow position: | chr5:69126766-69126920 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 81, 102 |
| Conread position: | 211-328 |
| Cow position: | chr5:31491250-31491133 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.