Cow genome map
| Conread name: | mA2-MI-P-A2-aex-a-09-1-UM.s1 |
| Conread position: | 2-264 |
| Cow position: | chr26:7148467-7148212 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 6-226 |
| Cow position: | chr26:23097347-23097129 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 49 |
| Conread position: | 6-228 |
| Cow position: | chr26:16167082-16166858 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 6-269 |
| Cow position: | chr26:22354244-22354511 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 6-272 |
| Cow position: | chr26:8700219-8699946 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 44 |
| Conread position: | 6-272 |
| Cow position: | chr26:35448894-35449164 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 6-292 |
| Cow position: | chr26:4585379-4585089 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 6-356 |
| Cow position: | chr26:32898040-32897667 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 6-360 |
| Cow position: | chr26:9604392-9604772 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 94, 49 |
| Conread position: | 7-153 |
| Cow position: | chr26:19769253-19769099 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 7-228 |
| Cow position: | chr26:19648760-19648976 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 96, 44 |
| Conread position: | 7-264 |
| Cow position: | chr26:28421921-28421670 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 143, 49 |
| Conread position: | 7-271 |
| Cow position: | chr26:8352795-8353069 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 7-273 |
| Cow position: | chr26:20129843-20129575 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 7-354 |
| Cow position: | chr26:3756065-3756408 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 7-356 |
| Cow position: | chr26:16604120-16604486 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 49 |
| Conread position: | 7-362 |
| Cow position: | chr26:10292429-10292794 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 105, 33 |
| Conread position: | 7-362 |
| Cow position: | chr26:32866056-32865691 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 7-379 |
| Cow position: | chr26:21637200-21636817 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 89, 30 |
| Conread position: | 7-384 |
| Cow position: | chr26:6475596-6475214 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 90, 25 |
| Conread position: | 9-271 |
| Cow position: | chr26:25393866-25394139 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 9-360 |
| Cow position: | chr26:17204306-17203945 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 46 |
| Conread position: | 9-364 |
| Cow position: | chr26:2770006-2769640 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 80, 46 |
| Conread position: | 10-355 |
| Cow position: | chr26:17289041-17289381 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 252 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 12-228 |
| Cow position: | chr26:11270083-11270292 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 12-292 |
| Cow position: | chr26:3706641-3706915 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 13-272 |
| Cow position: | chr26:829646-829906 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 91 |
| Conread position: | 13-273 |
| Cow position: | chr26:8810970-8811229 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 27 |
| Conread position: | 13-292 |
| Cow position: | chr26:32672602-32672304 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 13-356 |
| Cow position: | chr26:5246650-5246301 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 163 |
| Conread position: | 13-356 |
| Cow position: | chr26:14080557-14080897 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 17 |
| Conread position: | 13-366 |
| Cow position: | chr26:14924322-14924686 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 73, 15 |
| Conread position: | 13-367 |
| Cow position: | chr26:22249644-22249266 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 15-196 |
| Cow position: | chr26:2246790-2246983 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 15-293 |
| Cow position: | chr26:29353671-29353387 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 15-366 |
| Cow position: | chr26:9666567-9666212 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 15-373 |
| Cow position: | chr26:22622823-22623186 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 16-216 |
| Cow position: | chr26:33745759-33745967 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 5 |
| Conread position: | 16-261 |
| Cow position: | chr26:22892602-22892355 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 17-272 |
| Cow position: | chr26:6006202-6005956 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 17-338 |
| Cow position: | chr26:30605521-30605192 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 41 |
| Conread position: | 17-367 |
| Cow position: | chr26:21859666-21860026 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 18-357 |
| Cow position: | chr26:19110745-19111107 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 18-360 |
| Cow position: | chr26:12669041-12669396 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 21-360 |
| Cow position: | chr26:2196743-2196393 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 95, 37 |
| Conread position: | 21-366 |
| Cow position: | chr26:783085-782729 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 24-252 |
| Cow position: | chr26:21991952-21992183 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 24-293 |
| Cow position: | chr26:3019575-3019293 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 29-272 |
| Cow position: | chr26:2609946-2609705 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 30-361 |
| Cow position: | chr26:27585629-27585971 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 30-363 |
| Cow position: | chr26:12519873-12520229 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 30-364 |
| Cow position: | chr26:9632513-9632162 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 30-366 |
| Cow position: | chr26:9064206-9064538 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 32-266 |
| Cow position: | chr26:12145262-12145023 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 35-272 |
| Cow position: | chr26:12238163-12237928 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 10, 14 |
| Conread position: | 36-391 |
| Cow position: | chr26:15211666-15212038 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 40-320 |
| Cow position: | chr26:33253459-33253161 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 61-292 |
| Cow position: | chr26:26294312-26294072 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 147 |
| Conread position: | 61-344 |
| Cow position: | chr26:22152109-22152397 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 61-359 |
| Cow position: | chr26:33194531-33194823 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 31, 104 |
| Conread position: | 62-364 |
| Cow position: | chr26:14905926-14905596 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 31, 102 |
| Conread position: | 63-272 |
| Cow position: | chr26:32670605-32670395 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 77 |
| Conread position: | 70-362 |
| Cow position: | chr26:6470380-6470075 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 10, 159 |
| Conread position: | 75-292 |
| Cow position: | chr26:32834667-32834455 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 28, 60 |
| Conread position: | 78-293 |
| Cow position: | chr26:17155419-17155205 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 78-355 |
| Cow position: | chr26:21578174-21577907 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 126, 37 |
| Conread position: | 93-216 |
| Cow position: | chr26:6299055-6299185 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 94-363 |
| Cow position: | chr26:7955780-7956049 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 168, 23 |
| Conread position: | 106-367 |
| Cow position: | chr26:18719193-18719459 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 164, 109 |
| Conread position: | 110-353 |
| Cow position: | chr26:7162474-7162219 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 50 |
| Conread position: | 119-293 |
| Cow position: | chr26:19903330-19903504 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 145, 97 |
| Conread position: | 120-362 |
| Cow position: | chr26:34119086-34118834 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 150, 221 |
| Conread position: | 120-366 |
| Cow position: | chr26:9102164-9101908 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 120-366 |
| Cow position: | chr26:15564621-15564367 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 120-366 |
| Cow position: | chr26:32215395-32215650 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 141-263 |
| Cow position: | chr26:32659269-32659148 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 167-366 |
| Cow position: | chr26:10523450-10523249 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 173-360 |
| Cow position: | chr26:10137738-10137544 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 82, 91 |
| Conread position: | 178-334 |
| Cow position: | chr26:19768799-19768633 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 188-365 |
| Cow position: | chr26:34100975-34100799 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 106, 23 |
Show alignments to all cow chromosomes.