Cow genome map
| Conread name: | mA2-MI-P-A2-aex-a-09-1-UM.s1 |
| Conread position: | 1-367 |
| Cow position: | chr27:16493719-16493354 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 2-359 |
| Cow position: | chr27:30447322-30446952 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 4-191 |
| Cow position: | chr27:794928-794739 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 6-237 |
| Cow position: | chr27:13198059-13197812 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 6-270 |
| Cow position: | chr27:22035231-22035503 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 40, 155 |
| Conread position: | 6-292 |
| Cow position: | chr27:20036986-20037265 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 264, 23 |
| Conread position: | 6-363 |
| Cow position: | chr27:15408901-15409272 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 108, 49 |
| Conread position: | 6-367 |
| Cow position: | chr27:10992496-10992122 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 7-266 |
| Cow position: | chr27:4812740-4813005 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 7-280 |
| Cow position: | chr27:21138964-21138692 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 7-292 |
| Cow position: | chr27:12246795-12246503 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 93, 17 |
| Conread position: | 7-292 |
| Cow position: | chr27:15643312-15643024 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 7-324 |
| Cow position: | chr27:26935778-26936069 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 7-328 |
| Cow position: | chr27:21181977-21181652 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 7-346 |
| Cow position: | chr27:26161637-26161293 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 76, 49 |
| Conread position: | 7-353 |
| Cow position: | chr27:6454356-6453990 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 7-360 |
| Cow position: | chr27:4664611-4664274 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 100, 51 |
| Conread position: | 7-361 |
| Cow position: | chr27:8048595-8048957 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 7-363 |
| Cow position: | chr27:491029-490676 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 87, 49 |
| Conread position: | 7-363 |
| Cow position: | chr27:6160125-6159760 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 7-363 |
| Cow position: | chr27:12243994-12244354 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 7-364 |
| Cow position: | chr27:14937287-14937658 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 7-364 |
| Cow position: | chr27:31251183-31251543 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 54 |
| Conread position: | 7-365 |
| Cow position: | chr27:13005976-13005619 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 114, 19 |
| Conread position: | 7-365 |
| Cow position: | chr27:19601518-19601145 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 7-365 |
| Cow position: | chr27:20765822-20766183 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 27 |
| Conread position: | 7-365 |
| Cow position: | chr27:21578461-21578805 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 263, 48 |
| Conread position: | 13-228 |
| Cow position: | chr27:17472948-17472724 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 42 |
| Conread position: | 13-251 |
| Cow position: | chr27:11480494-11480743 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 13-265 |
| Cow position: | chr27:22513539-22513798 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 13-267 |
| Cow position: | chr27:25380126-25379865 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 13-268 |
| Cow position: | chr27:536593-536339 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 13-272 |
| Cow position: | chr27:1290729-1290979 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 13-272 |
| Cow position: | chr27:30868603-30868868 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 13-359 |
| Cow position: | chr27:26440921-26441272 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 13-363 |
| Cow position: | chr27:20553852-20553514 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 83, 39 |
| Conread position: | 15-146 |
| Cow position: | chr27:13860606-13860738 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 15-185 |
| Cow position: | chr27:19637776-19637600 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 15-222 |
| Cow position: | chr27:30362377-30362169 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 81, 48 |
| Conread position: | 15-233 |
| Cow position: | chr27:25471273-25471050 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 19, 44 |
| Conread position: | 15-280 |
| Cow position: | chr27:12424793-12425050 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 70, 38 |
| Conread position: | 16-217 |
| Cow position: | chr27:19577807-19577597 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 16-272 |
| Cow position: | chr27:22418637-22418894 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 5 |
| Conread position: | 16-365 |
| Cow position: | chr27:24342032-24341672 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 17-292 |
| Cow position: | chr27:19647810-19648093 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 83, 9 |
| Conread position: | 17-360 |
| Cow position: | chr27:29038813-29039165 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 17-363 |
| Cow position: | chr27:24224776-24225124 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 17-365 |
| Cow position: | chr27:15319582-15319236 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 135 |
| Conread position: | 17-366 |
| Cow position: | chr27:8430309-8430670 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 50 |
| Conread position: | 17-366 |
| Cow position: | chr27:19543778-19544151 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 18-361 |
| Cow position: | chr27:4858518-4858863 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 78, 14 |
| Conread position: | 23-219 |
| Cow position: | chr27:3934563-3934760 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 23-394 |
| Cow position: | chr27:27049786-27050167 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 24-293 |
| Cow position: | chr27:11416573-11416300 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 25-337 |
| Cow position: | chr27:22454654-22454966 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 27-331 |
| Cow position: | chr27:21681214-21681521 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 30-362 |
| Cow position: | chr27:26299957-26299618 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 30-366 |
| Cow position: | chr27:27053411-27053074 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 44-366 |
| Cow position: | chr27:20092733-20093063 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 46-366 |
| Cow position: | chr27:30365416-30365088 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 39, 115 |
| Conread position: | 61-364 |
| Cow position: | chr27:24509906-24509596 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 70-360 |
| Cow position: | chr27:783775-783481 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 9, 158 |
| Conread position: | 71-364 |
| Cow position: | chr27:25982657-25982947 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 72-361 |
| Cow position: | chr27:11356464-11356757 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 76-365 |
| Cow position: | chr27:8273080-8272781 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 78-356 |
| Cow position: | chr27:19083645-19083938 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 78-366 |
| Cow position: | chr27:2354705-2354993 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 87, 41 |
| Conread position: | 82-272 |
| Cow position: | chr27:17646109-17646296 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 84-272 |
| Cow position: | chr27:4007196-4007384 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 67 |
| Conread position: | 93-320 |
| Cow position: | chr27:13977497-13977731 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 94-359 |
| Cow position: | chr27:12247724-12247463 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 201, 27 |
| Conread position: | 98-272 |
| Cow position: | chr27:19660979-19660804 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 98-360 |
| Cow position: | chr27:22225551-22225813 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 60 |
| Conread position: | 98-366 |
| Cow position: | chr27:2847896-2847623 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 182, 41 |
| Conread position: | 99-366 |
| Cow position: | chr27:20812953-20812674 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 102-288 |
| Cow position: | chr27:19869868-19869688 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 106-365 |
| Cow position: | chr27:1536682-1536957 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 124, 156 |
| Conread position: | 128-396 |
| Cow position: | chr27:13970374-13970637 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 150, 87 |
| Conread position: | 158-367 |
| Cow position: | chr27:13958358-13958576 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 185-364 |
| Cow position: | chr27:11746547-11746359 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 89, 70 |
Show alignments to all cow chromosomes.