Cow genome map
| Conread name: | mA2-MI-P-A2-aex-a-12-1-UM.s1 |
| Conread position: | 451-673 |
| Cow position: | chr3:47272871-47272647 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 454-677 |
| Cow position: | chr3:49732784-49732560 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 109 |
| Conread position: | 462-677 |
| Cow position: | chr3:26919752-26919957 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 467-677 |
| Cow position: | chr3:77225757-77225969 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 6, 168 |
| Conread position: | 472-675 |
| Cow position: | chr3:30938527-30938730 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 161 |
| Conread position: | 474-676 |
| Cow position: | chr3:3885164-3884964 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 78 |
| Conread position: | 481-672 |
| Cow position: | chr3:56645291-56645100 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 148 |
| Conread position: | 481-672 |
| Cow position: | chr3:58034597-58034406 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 173, 155 |
| Conread position: | 481-673 |
| Cow position: | chr3:26566820-26567007 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 140, 54 |
| Conread position: | 481-673 |
| Cow position: | chr3:54654135-54653943 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 173, 148 |
| Conread position: | 481-673 |
| Cow position: | chr3:65988961-65989152 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 173, 77 |
| Conread position: | 481-676 |
| Cow position: | chr3:16657827-16657634 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 170, 71 |
| Conread position: | 481-677 |
| Cow position: | chr3:31423087-31422891 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 173, 148 |
| Conread position: | 481-677 |
| Cow position: | chr3:37983325-37983130 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 158 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 170, 15 |
| Conread position: | 481-677 |
| Cow position: | chr3:56148332-56148531 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 482-673 |
| Cow position: | chr3:15082893-15082709 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 482-675 |
| Cow position: | chr3:64683971-64683779 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 482-677 |
| Cow position: | chr3:2866614-2866419 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 177, 147 |
| Conread position: | 482-677 |
| Cow position: | chr3:6442109-6442304 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 147 |
| Conread position: | 482-677 |
| Cow position: | chr3:7155766-7155571 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 482-677 |
| Cow position: | chr3:24573126-24572931 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 174, 147 |
| Conread position: | 482-677 |
| Cow position: | chr3:28435658-28435463 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 172, 147 |
| Conread position: | 482-677 |
| Cow position: | chr3:37021369-37021175 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 172, 54 |
| Conread position: | 482-677 |
| Cow position: | chr3:43525698-43525503 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 179, 147 |
| Conread position: | 482-677 |
| Cow position: | chr3:53880226-53880031 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 172, 164 |
| Conread position: | 482-677 |
| Cow position: | chr3:56336917-56336723 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 156, 71 |
| Conread position: | 482-677 |
| Cow position: | chr3:66829898-66829703 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 174, 147 |
| Conread position: | 485-673 |
| Cow position: | chr3:49416804-49416615 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 55, 145 |
| Conread position: | 485-673 |
| Cow position: | chr3:56696892-56697080 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 169, 144 |
| Conread position: | 486-676 |
| Cow position: | chr3:15663399-15663209 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 164, 147 |
| Conread position: | 487-672 |
| Cow position: | chr3:52257469-52257284 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 164, 146 |
| Conread position: | 493-673 |
| Cow position: | chr3:21303512-21303333 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 64, 118 |
| Conread position: | 497-677 |
| Cow position: | chr3:52664453-52664631 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 154, 101 |
| Conread position: | 500-677 |
| Cow position: | chr3:2834480-2834303 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 161, 129 |
| Conread position: | 500-677 |
| Cow position: | chr3:38862787-38862958 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 500-677 |
| Cow position: | chr3:78520106-78520283 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 154, 129 |
| Conread position: | 507-677 |
| Cow position: | chr3:8605839-8605674 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 143, 54 |
| Conread position: | 508-673 |
| Cow position: | chr3:24443036-24442871 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 146, 121 |
| Conread position: | 509-677 |
| Cow position: | chr3:36862032-36861867 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 150, 74 |
| Conread position: | 509-677 |
| Cow position: | chr3:66968811-66968643 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 145, 137 |
| Conread position: | 521-677 |
| Cow position: | chr3:75772055-75771899 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 133, 108 |
Show alignments to all cow chromosomes.