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Cow genome map

           
Conread name:
           
mA2-MI-P-A2-aff-b-02-1-UM.s1
        

               
Conread position:
               
1-202
               

               
Cow position:
               
chr18:50271940-50272141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
71, 81
               

               
Conread position:
               
1-282
               

               
Cow position:
               
chr18:49033071-49032790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 144
               

               
Conread position:
               
1-289
               

               
Cow position:
               
chr18:1418313-1418602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
239, 247
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr18:1417977-1418294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
284, 0
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr18:41198222-41198540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
72, 81
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr18:33064375-33064056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
81, 58
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr18:49032483-49032164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
154, 160
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr18:51400675-51400994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
233, 228
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr18:40075082-40075402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
48, 31
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr18:41197550-41197870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
1-320
               

               
Cow position:
               
chr18:53560489-53560805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
67, 76
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr18:14453229-14452908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr18:40324489-40324168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
252, 243
               

               
Conread position:
               
1-343
               

               
Cow position:
               
chr18:51367536-51367191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
158, 153
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr18:49033155-49032804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
159, 144
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr18:56329204-56328853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
154, 159
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr18:49032735-49032366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
65, 58
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr18:52012132-52011765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 39
               

               
Conread position:
               
1-367
               

               
Cow position:
               
chr18:42791107-42791476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 58
               

               
Conread position:
               
1-381
               

               
Cow position:
               
chr18:43168103-43168483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
82, 58
               

               
Conread position:
               
1-382
               

               
Cow position:
               
chr18:1418061-1418442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr18:56494155-56494536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
155, 161
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr18:44398464-44398078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
280, 371
               

               
Conread position:
               
2-201
               

               
Cow position:
               
chr18:43048584-43048385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr18:49032398-49032091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
154, 164
               

               
Conread position:
               
2-317
               

               
Cow position:
               
chr18:42792116-42792432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
71, 76
               

               
Conread position:
               
2-318
               

               
Cow position:
               
chr18:41197635-41197952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
64, 57
               

               
Conread position:
               
2-320
               

               
Cow position:
               
chr18:33064290-33063971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
173, 154
               

               
Conread position:
               
2-321
               

               
Cow position:
               
chr18:44154394-44154071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
15, 157
               

               
Conread position:
               
2-349
               

               
Cow position:
               
chr18:33064794-33064446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
81, 70
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr18:33064626-33064276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
68, 81
               

               
Conread position:
               
2-356
               

               
Cow position:
               
chr18:56329959-56329603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
153, 164
               

               
Conread position:
               
2-420
               

               
Cow position:
               
chr18:33092878-33092463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 165
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr18:55066965-55066649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
158, 153
               

               
Conread position:
               
3-320
               

               
Cow position:
               
chr18:33064037-33063719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
68, 79
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr18:51752190-51751871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 90
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr18:51789244-51788925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
152, 159
               

               
Conread position:
               
3-321
               

               
Cow position:
               
chr18:51812487-51812168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 159
               

               
Conread position:
               
3-382
               

               
Cow position:
               
chr18:49033405-49033026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 56
               

               
Conread position:
               
3-390
               

               
Cow position:
               
chr18:43093525-43093138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
152, 159
               

               
Conread position:
               
4-319
               

               
Cow position:
               
chr18:42959742-42959426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
280, 0
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr18:1418232-1418549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
69, 78
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr18:43119925-43119608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
70, 55
               

               
Conread position:
               
4-320
               

               
Cow position:
               
chr18:43175294-43174977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
4-321
               

               
Cow position:
               
chr18:51400594-51400912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
155, 150
               

               
Conread position:
               
4-321
               

               
Cow position:
               
chr18:51839163-51838845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 79
               

               
Conread position:
               
4-322
               

               
Cow position:
               
chr18:42827382-42827701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 67
               

               
Conread position:
               
4-382
               

               
Cow position:
               
chr18:56329285-56328907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
283, 349
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr18:42960236-42959929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 72
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr18:51812653-51812336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
171, 159
               

               
Conread position:
               
5-351
               

               
Cow position:
               
chr18:52447843-52448190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
150, 155
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr18:40324653-40324277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
5-381
               

               
Cow position:
               
chr18:52447759-52448135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
279, 349
               

               
Conread position:
               
5-414
               

               
Cow position:
               
chr18:51789494-51789089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
5-421
               

               
Cow position:
               
chr18:51368035-51367625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
78, 65
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr18:52447507-52447923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
279, 325
               

               
Conread position:
               
5-426
               

               
Cow position:
               
chr18:52447591-52448007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
279, 349
               

               
Conread position:
               
6-168
               

               
Cow position:
               
chr18:42837284-42837122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
6-202
               

               
Cow position:
               
chr18:52447004-52447200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 53
               

               
Conread position:
               
6-205
               

               
Cow position:
               
chr18:40324148-40323949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-274
               

               
Cow position:
               
chr18:42984740-42984472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
157, 149
               

               
Conread position:
               
6-274
               

               
Cow position:
               
chr18:43022251-43021983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
154, 149
               

               
Conread position:
               
6-283
               

               
Cow position:
               
chr18:42744065-42743788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
6-291
               

               
Cow position:
               
chr18:44397787-44397503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
83, 65
               

               
Conread position:
               
6-317
               

               
Cow position:
               
chr18:42790944-42791256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
153, 139
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:43048664-43048350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
234, 223
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:44154219-44153906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
202, 190
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52427781-52428095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52427865-52428179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52427949-52428263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
161, 150
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52428453-52428767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
278, 0
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52433130-52433444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
69, 64
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52433214-52433528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
42, 48
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52433298-52433612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
245, 238
               

               
Conread position:
               
6-319
               

               
Cow position:
               
chr18:52448012-52448327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
146, 153
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr18:43175040-43174725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
165, 150
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr18:44184570-44184255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
78, 66
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr18:44398291-44397976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
67, 75
               

               
Conread position:
               
6-320
               

               
Cow position:
               
chr18:54979708-54980023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
275, 0
               

               
Conread position:
               
6-321
               

               
Cow position:
               
chr18:51812988-51812672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
160, 150
               

               
Conread position:
               
6-322
               

               
Cow position:
               
chr18:42675005-42674688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
278, 0
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr18:44397871-44397525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
61, 53
               

               
Conread position:
               
6-365
               

               
Cow position:
               
chr18:42837704-42837340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
278, 329
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr18:41949200-41948825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
149, 160
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr18:42985496-42985121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
244, 238
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr18:43120175-43119800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
157, 139
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr18:43175376-43175001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
275, 331
               

               
Conread position:
               
6-381
               

               
Cow position:
               
chr18:44398207-44397832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
278, 348
               

               
Conread position:
               
6-382
               

               
Cow position:
               
chr18:42675173-42674797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
153, 149
               

               
Conread position:
               
6-386
               

               
Cow position:
               
chr18:44398123-44397744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
83, 57
               

               
Conread position:
               
6-388
               

               
Cow position:
               
chr18:33064538-33064157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
249, 218
               

               
Conread position:
               
6-388
               

               
Cow position:
               
chr18:56247665-56247292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 89
               

               
Conread position:
               
6-390
               

               
Cow position:
               
chr18:40075003-40075387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 16
               

               
Conread position:
               
6-390
               

               
Cow position:
               
chr18:42675089-42674705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
281, 348
               

               
Conread position:
               
6-390
               

               
Cow position:
               
chr18:42675341-42674957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
157, 149
               

               
Conread position:
               
6-421
               

               
Cow position:
               
chr18:41197891-41198301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
87, 57
               

               
Conread position:
               
6-426
               

               
Cow position:
               
chr18:42744317-42743902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
278, 348
               

               
Conread position:
               
6-426
               

               
Cow position:
               
chr18:52447340-52447755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
67, 72
               

               
Conread position:
               
6-426
               

               
Cow position:
               
chr18:55018028-55018443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 53
               

               
Conread position:
               
6-427
               

               
Cow position:
               
chr18:52447424-52447840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
6-428
               

               
Cow position:
               
chr18:42744653-42744236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
275, 334
               

               
Conread position:
               
7-316
               

               
Cow position:
               
chr18:50083767-50084077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
66, 71
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr18:43093101-43092791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
152, 147
               

               
Conread position:
               
7-317
               

               
Cow position:
               
chr18:43168025-43168336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
7-318
               

               
Cow position:
               
chr18:42959814-42959511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
274, 64
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:41197976-41198289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 155
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:41948695-41948382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:44253658-44253346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
153, 141
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:50848736-50849049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
47, 43
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:52428118-52428431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
244, 237
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:52428202-52428515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
160, 149
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:52428370-52428683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:52433383-52433696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
160, 149
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:52433551-52433864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
7-319
               

               
Cow position:
               
chr18:52433635-52433948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr18:40085955-40085640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr18:43022334-43022020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr18:43022586-43022272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
274, 0
               

               
Conread position:
               
7-320
               

               
Cow position:
               
chr18:43120258-43119944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
240, 229
               

               
Conread position:
               
7-325
               

               
Cow position:
               
chr18:41948863-41948543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
156, 148
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr18:33093041-33092722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
156, 150
               

               
Conread position:
               
7-326
               

               
Cow position:
               
chr18:43168193-43168512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
161, 149
               

               
Conread position:
               
7-337
               

               
Cow position:
               
chr18:43119838-43119507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
148, 155
               

               
Conread position:
               
7-341
               

               
Cow position:
               
chr18:44184905-44184570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
156, 148
               

               
Conread position:
               
7-350
               

               
Cow position:
               
chr18:44184485-44184141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
155, 148
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr18:42837787-42837442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr18:43174955-43174610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
72, 78
               

               
Conread position:
               
7-351
               

               
Cow position:
               
chr18:43175543-43175198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr18:42837955-42837581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
221, 239
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr18:42985075-42984701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr18:43022838-43022464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
156, 148
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr18:43120006-43119632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
220, 239
               

               
Conread position:
               
7-381
               

               
Cow position:
               
chr18:51368117-51367744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 52
               

               
Conread position:
               
7-388
               

               
Cow position:
               
chr18:43175207-43174827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
62, 56
               

               
Conread position:
               
7-427
               

               
Cow position:
               
chr18:51368453-51368039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
277, 344
               

               
Conread position:
               
8-201
               

               
Cow position:
               
chr18:33063780-33063587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-202
               

               
Cow position:
               
chr18:51969816-51970010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 154
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr18:33063864-33063635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
61, 74
               

               
Conread position:
               
8-239
               

               
Cow position:
               
chr18:56316115-56316346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr18:52428707-52428996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
225, 231
               

               
Conread position:
               
8-296
               

               
Cow position:
               
chr18:52433888-52434177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
124, 130
               

               
Conread position:
               
8-307
               

               
Cow position:
               
chr18:51874045-51874338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
65, 84
               

               
Conread position:
               
8-308
               

               
Cow position:
               
chr18:51969407-51969706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr18:51368200-51367896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
145, 150
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr18:51400766-51401070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
8-317
               

               
Cow position:
               
chr18:55523794-55524104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
75, 55
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr18:51789743-51789432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
146, 154
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr18:52428539-52428850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
276, 0
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr18:52433720-52434031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
276, 0
               

               
Conread position:
               
8-318
               

               
Cow position:
               
chr18:56247747-56247441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
286, 262
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr18:42792374-42792686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr18:51367613-51367301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
272, 286
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr18:51368536-51368224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
61, 55
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr18:52428035-52428347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr18:52428287-52428599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
75, 52
               

               
Conread position:
               
8-319
               

               
Cow position:
               
chr18:52433468-52433780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
75, 69
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr18:40324230-40323918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
284, 275
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr18:40324314-40324001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
72, 77
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr18:41949030-41948717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 158
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr18:53610317-53610004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr18:56329365-56329052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
260, 0
               

               
Conread position:
               
8-320
               

               
Cow position:
               
chr18:56329533-56329220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
144, 152
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr18:14453954-14453640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 153
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr18:42837450-42837136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
147, 153
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr18:51789071-51788757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
226, 221
               

               
Conread position:
               
8-321
               

               
Cow position:
               
chr18:51812314-51812000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
147, 154
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr18:43093604-43093289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
8-322
               

               
Cow position:
               
chr18:51765848-51765533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 154
               

               
Conread position:
               
8-323
               

               
Cow position:
               
chr18:51400850-51401166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
146, 151
               

               
Conread position:
               
8-326
               

               
Cow position:
               
chr18:51839243-51838924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
147, 154
               

               
Conread position:
               
8-345
               

               
Cow position:
               
chr18:42674667-42674333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
152, 137
               

               
Conread position:
               
8-350
               

               
Cow position:
               
chr18:49032560-49032217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr18:33064116-33063772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
64, 74
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr18:33064704-33064360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
74, 79
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr18:42675255-42674911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
155, 148
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr18:49032896-49032552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
151, 137
               

               
Conread position:
               
8-351
               

               
Cow position:
               
chr18:52012459-52012117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
168, 13
               

               
Conread position:
               
8-377
               

               
Cow position:
               
chr18:53586933-53586564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
60, 51
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr18:40086198-40085833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
276, 191
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr18:43022501-43022128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
276, 345
               

               
Conread position:
               
8-381
               

               
Cow position:
               
chr18:51812734-51812361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
8-382
               

               
Cow position:
               
chr18:55067044-55066670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
8-383
               

               
Cow position:
               
chr18:49032812-49032437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
8-385
               

               
Cow position:
               
chr18:51752269-51751892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
224, 247
               

               
Conread position:
               
8-386
               

               
Cow position:
               
chr18:55066708-55066330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
8-388
               

               
Cow position:
               
chr18:33064872-33064493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
159, 150
               

               
Conread position:
               
8-388
               

               
Cow position:
               
chr18:51789575-51789196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
65, 74
               

               
Conread position:
               
8-390
               

               
Cow position:
               
chr18:53586429-53586047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
148, 154
               

               
Conread position:
               
8-411
               

               
Cow position:
               
chr18:52447930-52448330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
276, 376
               

               
Conread position:
               
8-426
               

               
Cow position:
               
chr18:52447258-52447671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 113
               

               
Conread position:
               
10-321
               

               
Cow position:
               
chr18:51400264-51400576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
145, 152
               

               
Conread position:
               
12-368
               

               
Cow position:
               
chr18:56329445-56329087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
143, 148
               

               
Conread position:
               
12-377
               

               
Cow position:
               
chr18:49022800-49023165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 73
               

               
Conread position:
               
13-316
               

               
Cow position:
               
chr18:43048741-43048437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
220, 211
               

               
Conread position:
               
13-317
               

               
Cow position:
               
chr18:50058964-50058659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
70, 51
               

               
Conread position:
               
13-321
               

               
Cow position:
               
chr18:41198150-41198459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
141, 147
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chr18:40324813-40324445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
147, 143
               

               
Conread position:
               
14-330
               

               
Cow position:
               
chr18:51400436-51400753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
141, 148
               

               
Conread position:
               
16-320
               

               
Cow position:
               
chr18:56494002-56494307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
60, 55
               

               
Conread position:
               
17-321
               

               
Cow position:
               
chr18:51812893-51812588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
65, 54
               

               
Conread position:
               
18-326
               

               
Cow position:
               
chr18:51400524-51400833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
216, 211
               

               
Conread position:
               
20-321
               

               
Cow position:
               
chr18:14453858-14453556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
134, 139
               

               
Conread position:
               
20-321
               

               
Cow position:
               
chr18:51839399-51839097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
135, 142
               

               
Conread position:
               
20-321
               

               
Cow position:
               
chr18:51969335-51969635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
135, 142
               

               
Conread position:
               
20-351
               

               
Cow position:
               
chr18:55066864-55066532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 140
               

               
Conread position:
               
33-378
               

               
Cow position:
               
chr18:56247808-56247464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 318
               

               
Conread position:
               
43-388
               

               
Cow position:
               
chr18:33093089-33092745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
111, 117
               

               
Conread position:
               
53-382
               

               
Cow position:
               
chr18:56493871-56494200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
103, 115
               
Show alignments to all cow chromosomes.