Cow genome map
| Conread name: | mA2-MI-P-A2-aff-b-02-1-UM.s1 |
| Conread position: | 1-247 |
| Cow position: | chr22:12499683-12499929 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-295 |
| Cow position: | chr22:12385189-12384895 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-368 |
| Cow position: | chr22:12499095-12499464 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 1-382 |
| Cow position: | chr22:12399535-12399154 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 280, 353 |
| Conread position: | 1-388 |
| Cow position: | chr22:12431263-12430877 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 1-388 |
| Cow position: | chr22:12476080-12475694 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 238, 250 |
| Conread position: | 1-421 |
| Cow position: | chr22:12431515-12431100 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 155, 161 |
| Conread position: | 1-423 |
| Cow position: | chr22:12476164-12475745 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 2-312 |
| Cow position: | chr22:12432186-12431875 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 152, 165 |
| Conread position: | 2-317 |
| Cow position: | chr22:12385356-12385040 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 81 |
| Conread position: | 2-381 |
| Cow position: | chr22:12432438-12432059 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 150, 161 |
| Conread position: | 3-351 |
| Cow position: | chr22:11641001-11641350 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 172 |
| Conread position: | 4-321 |
| Cow position: | chr22:46654073-46654391 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 230, 220 |
| Conread position: | 5-240 |
| Cow position: | chr22:12419319-12419084 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 5-318 |
| Cow position: | chr22:12498847-12499160 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 149, 157 |
| Conread position: | 5-358 |
| Cow position: | chr22:12399195-12398838 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 138, 162 |
| Conread position: | 6-282 |
| Cow position: | chr22:12458042-12457766 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 6-296 |
| Cow position: | chr22:46654495-46654786 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 149, 156 |
| Conread position: | 6-390 |
| Cow position: | chr22:12399446-12399062 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 6-390 |
| Cow position: | chr22:12476411-12476027 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 148, 156 |
| Conread position: | 7-201 |
| Cow position: | chr22:12475486-12475292 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 7-319 |
| Cow position: | chr22:46654328-46654641 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 145, 162 |
| Conread position: | 7-320 |
| Cow position: | chr22:12458545-12458231 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 277, 0 |
| Conread position: | 7-321 |
| Cow position: | chr22:12498933-12499248 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 66, 70 |
| Conread position: | 7-390 |
| Cow position: | chr22:12431341-12430958 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 52 |
| Conread position: | 7-407 |
| Cow position: | chr22:12499437-12499833 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 148, 160 |
| Conread position: | 7-408 |
| Cow position: | chr22:12475822-12475425 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 148, 160 |
| Conread position: | 7-425 |
| Cow position: | chr22:12399781-12399366 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 277, 347 |
| Conread position: | 8-236 |
| Cow position: | chr22:12431676-12431448 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-273 |
| Cow position: | chr22:12399024-12398759 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-290 |
| Cow position: | chr22:12475569-12475286 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 148, 154 |
| Conread position: | 8-312 |
| Cow position: | chr22:12430920-12430615 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 166, 150 |
| Conread position: | 8-317 |
| Cow position: | chr22:12418963-12418653 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 8-320 |
| Cow position: | chr22:12399108-12398795 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 8-324 |
| Cow position: | chr22:12475989-12475672 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 147, 159 |
| Conread position: | 8-324 |
| Cow position: | chr22:12499270-12499587 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 147, 159 |
| Conread position: | 8-326 |
| Cow position: | chr22:11701165-11701483 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 8-349 |
| Cow position: | chr22:11701333-11701675 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 234, 246 |
| Conread position: | 8-367 |
| Cow position: | chr22:11640754-11641116 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 8-382 |
| Cow position: | chr22:11640922-11641296 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 233, 244 |
| Conread position: | 8-388 |
| Cow position: | chr22:12431088-12430709 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 75, 65 |
| Conread position: | 8-388 |
| Cow position: | chr22:12431424-12431045 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 8-388 |
| Cow position: | chr22:12475737-12475358 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 8-388 |
| Cow position: | chr22:12499186-12499565 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 231, 243 |
| Conread position: | 8-411 |
| Cow position: | chr22:12385604-12385203 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 200, 241 |
| Conread position: | 8-412 |
| Cow position: | chr22:12432012-12431612 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 8-414 |
| Cow position: | chr22:12476325-12475922 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 8-415 |
| Cow position: | chr22:12458376-12457972 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 147, 154 |
| Conread position: | 8-432 |
| Cow position: | chr22:12475905-12475486 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 144, 152 |
| Conread position: | 9-358 |
| Cow position: | chr22:12458627-12458274 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 152, 147 |
| Conread position: | 34-351 |
| Cow position: | chr22:12399838-12399520 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 247, 0 |
Show alignments to all cow chromosomes.