Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-211
Cow position: chr11:42855616-42855415 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 116, 43

Conread position: 1-337
Cow position: chr11:30254321-30254672 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 39, 26

Conread position: 1-340
Cow position: chr11:12157695-12158041 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 227
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 114

Conread position: 1-356
Cow position: chr11:48788606-48788247 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 230
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 57, 189

Conread position: 1-358
Cow position: chr11:26052427-26052056 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 245
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 82

Conread position: 1-368
Cow position: chr11:6078916-6079296 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 266
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 49, 248

Conread position: 1-371
Cow position: chr11:17548262-17548634 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 242
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 122, 52

Conread position: 2-295
Cow position: chr11:41422814-41422514 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 194
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 287

Conread position: 2-337
Cow position: chr11:7228345-7228695 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 229
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 131

Conread position: 2-337
Cow position: chr11:12951055-12950724 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 121

Conread position: 2-337
Cow position: chr11:75392344-75392694 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-368
Cow position: chr11:17327427-17327791 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 244
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 47, 35

Conread position: 2-370
Cow position: chr11:4268054-4267676 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 243
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr11:27725801-27725425 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 121, 51

Conread position: 2-370
Cow position: chr11:32478721-32478337 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 190

Conread position: 2-370
Cow position: chr11:33602538-33602153 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 131

Conread position: 2-370
Cow position: chr11:53429930-53429546 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr11:2350044-2350429 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:7121872-7121487 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:9732583-9732197 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 251
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 363

Conread position: 2-371
Cow position: chr11:10850212-10850597 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 131

Conread position: 2-371
Cow position: chr11:10957912-10958297 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr11:15987348-15987729 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr11:20732131-20731746 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 256
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr11:25099078-25098693 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:26122826-26122445 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr11:28227686-28227303 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 38, 158

Conread position: 2-371
Cow position: chr11:32078688-32078303 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr11:35862536-35862151 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 252
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 129

Conread position: 2-371
Cow position: chr11:38575391-38575006 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:38600843-38600461 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 38, 95

Conread position: 2-371
Cow position: chr11:38833381-38832996 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 190

Conread position: 2-371
Cow position: chr11:39585630-39585245 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:41168603-41168218 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr11:41744652-41745037 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:47737450-47737069 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr11:47973760-47973375 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 51, 286

Conread position: 2-371
Cow position: chr11:49012969-49012584 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr11:49172409-49172024 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr11:52421561-52421945 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 36, 159

Conread position: 2-371
Cow position: chr11:52845636-52846015 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 51, 120

Conread position: 2-371
Cow position: chr11:57626082-57625698 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 47, 108

Conread position: 2-371
Cow position: chr11:58138803-58139186 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr11:58947735-58948115 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 156

Conread position: 2-371
Cow position: chr11:63391384-63391000 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 38, 264

Conread position: 2-371
Cow position: chr11:67296916-67296532 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 148

Conread position: 2-371
Cow position: chr11:67446148-67445765 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr11:67452746-67453131 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 249
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 38, 286

Conread position: 2-371
Cow position: chr11:76371963-76371589 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 120

Conread position: 2-371
Cow position: chr11:84966209-84966590 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 252
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 51, 158

Conread position: 2-378
Cow position: chr11:30201598-30201206 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 256
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 38, 287

Conread position: 2-395
Cow position: chr11:19100390-19099986 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 262
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 36, 131

Conread position: 2-395
Cow position: chr11:40403662-40403263 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 260
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 60

Conread position: 2-413
Cow position: chr11:44154996-44154566 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 276
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 51, 393

Conread position: 2-428
Cow position: chr11:28124606-28125041 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 280
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 51, 391

Conread position: 3-367
Cow position: chr11:4884870-4884510 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 119

Conread position: 5-363
Cow position: chr11:3882173-3881821 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 46, 14

Conread position: 5-370
Cow position: chr11:9761682-9761295 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 269
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 33, 105

Conread position: 5-371
Cow position: chr11:10699649-10699270 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 48, 19

Conread position: 5-371
Cow position: chr11:19061980-19061598 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 245
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 5-371
Cow position: chr11:44581136-44580753 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 35, 129

Conread position: 5-371
Cow position: chr11:71331597-71331978 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 252
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 35, 128

Conread position: 6-356
Cow position: chr11:9577184-9576843 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 224
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 117, 53

Conread position: 7-371
Cow position: chr11:73799603-73799223 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 238
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 7-395
Cow position: chr11:72312553-72312954 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 259
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 33, 143

Conread position: 9-394
Cow position: chr11:25791253-25790860 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 161

Conread position: 9-400
Cow position: chr11:5745710-5745303 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 266
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 46, 143

Conread position: 11-337
Cow position: chr11:35143218-35142881 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 217
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 149

Conread position: 13-371
Cow position: chr11:70436935-70437294 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 24

Conread position: 56-368
Cow position: chr11:11990139-11990462 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 212
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 64, 72

Conread position: 56-371
Cow position: chr11:30105042-30104716 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 56-371
Cow position: chr11:41234825-41235151 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 205
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 56-371
Cow position: chr11:43511821-43511495 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 211
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 72

Conread position: 57-327
Cow position: chr11:68513511-68513237 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 35

Conread position: 60-378
Cow position: chr11:35268537-35268849 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 137, 96

Conread position: 61-252
Cow position: chr11:85209253-85209059 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 66, 0

Conread position: 69-330
Cow position: chr11:46722102-46721846 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 199
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 53, 73

Conread position: 73-370
Cow position: chr11:26268415-26268700 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 142, 86

Conread position: 75-371
Cow position: chr11:61398440-61398137 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 197
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 80

Conread position: 76-371
Cow position: chr11:58135889-58136193 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 196
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 47, 159

Conread position: 82-371
Cow position: chr11:17938786-17938503 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 213
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 40, 16

Conread position: 82-399
Cow position: chr11:3370603-3370273 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 214
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 31, 70

Conread position: 84-311
Cow position: chr11:79485878-79486107 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 81

Conread position: 84-371
Cow position: chr11:31864796-31865094 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 193
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 84-371
Cow position: chr11:39807104-39807402 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 84-371
Cow position: chr11:56917824-56917527 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 193
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 67

Conread position: 85-370
Cow position: chr11:44254256-44254550 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 133

Conread position: 89-368
Cow position: chr11:8819412-8819695 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 37

Conread position: 89-371
Cow position: chr11:37438151-37438426 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 33, 23

Conread position: 89-371
Cow position: chr11:40773846-40773552 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 194
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 32, 0

Conread position: 92-368
Cow position: chr11:5262170-5261899 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 30, 73

Conread position: 96-370
Cow position: chr11:76277066-76276786 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 165, 53

Conread position: 100-394
Cow position: chr11:13794468-13794172 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 22, 65

Conread position: 121-370
Cow position: chr11:29663832-29663574 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 13

Conread position: 139-371
Cow position: chr11:58050687-58050444 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 150-371
Cow position: chr11:68599792-68599572 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 76

Conread position: 173-368
Cow position: chr11:84740352-84740548 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 144

Conread position: 191-371
Cow position: chr11:64762436-64762248 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 144

Conread position: 199-411
Cow position: chr11:20573917-20573702 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 94, 110

Conread position: 200-394
Cow position: chr11:76602240-76602440 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.