Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-350
Cow position: chr13:15279624-15279267 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 230
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 39, 132

Conread position: 1-368
Cow position: chr13:5288188-5288554 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 242
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 80

Conread position: 1-371
Cow position: chr13:5499821-5499435 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 251
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 1-371
Cow position: chr13:17050066-17049683 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 254
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 82

Conread position: 1-371
Cow position: chr13:48548318-48548696 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 262
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 39, 53

Conread position: 1-376
Cow position: chr13:17537734-17538118 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 248
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 48, 78

Conread position: 2-277
Cow position: chr13:4733700-4733983 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 2-295
Cow position: chr13:3692780-3692480 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 191
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 36, 287

Conread position: 2-328
Cow position: chr13:39692128-39692459 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 214
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 85

Conread position: 2-337
Cow position: chr13:34509643-34509299 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 230
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-337
Cow position: chr13:41338492-41338148 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 224
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 182

Conread position: 2-339
Cow position: chr13:30036111-30035779 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 216
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 60

Conread position: 2-368
Cow position: chr13:562220-561838 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 246
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 2-370
Cow position: chr13:5516160-5515776 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr13:18330942-18330575 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 246
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 60

Conread position: 2-370
Cow position: chr13:19637313-19637696 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 2-370
Cow position: chr13:30470208-30469825 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 133

Conread position: 2-370
Cow position: chr13:34040174-34039790 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 131

Conread position: 2-370
Cow position: chr13:35759726-35760108 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 243
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 38, 129

Conread position: 2-370
Cow position: chr13:45885088-45885457 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 58, 80

Conread position: 2-371
Cow position: chr13:3555578-3555963 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr13:4486021-4486404 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr13:11737923-11738308 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 47, 0

Conread position: 2-371
Cow position: chr13:13327110-13327490 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 38, 156

Conread position: 2-371
Cow position: chr13:13902031-13902411 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 38, 128

Conread position: 2-371
Cow position: chr13:15559502-15559887 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 264
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 81

Conread position: 2-371
Cow position: chr13:15922291-15921906 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr13:17310586-17310969 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 251
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 85

Conread position: 2-371
Cow position: chr13:18122704-18122319 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr13:19230544-19230161 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr13:19565881-19566270 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 252
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 115

Conread position: 2-371
Cow position: chr13:23455606-23455989 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr13:24932626-24932240 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 2-371
Cow position: chr13:32080031-32080416 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr13:32735018-32734635 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 255
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 20

Conread position: 2-371
Cow position: chr13:33334181-33333801 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr13:33523789-33523405 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 256
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr13:36671822-36672208 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr13:49975842-49976220 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 243
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 160

Conread position: 2-371
Cow position: chr13:50111636-50112017 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 248
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr13:51466032-51465647 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr13:60647414-60647033 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 156

Conread position: 2-372
Cow position: chr13:32923103-32922722 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 253
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 20

Conread position: 2-395
Cow position: chr13:6665967-6665561 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 270
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 131

Conread position: 2-422
Cow position: chr13:32983231-32982803 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 281
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 390

Conread position: 5-344
Cow position: chr13:42001751-42002105 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 44, 81

Conread position: 5-367
Cow position: chr13:28342966-28342584 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 267
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 49, 153

Conread position: 5-368
Cow position: chr13:44463761-44463389 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 243
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 93

Conread position: 5-370
Cow position: chr13:32548930-32549310 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 218

Conread position: 5-371
Cow position: chr13:35539335-35539718 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 253
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 129

Conread position: 6-205
Cow position: chr13:569596-569802 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 108

Conread position: 6-369
Cow position: chr13:37797454-37797079 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 254
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 53

Conread position: 6-370
Cow position: chr13:4943556-4943935 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 245
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 127

Conread position: 6-371
Cow position: chr13:31731392-31731018 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 34, 154

Conread position: 6-371
Cow position: chr13:34870134-34870512 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 34, 88

Conread position: 7-371
Cow position: chr13:30240722-30241099 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 246
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 122

Conread position: 9-369
Cow position: chr13:3299458-3299831 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 29, 76

Conread position: 9-370
Cow position: chr13:3333637-3333276 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 248
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 46, 18

Conread position: 9-391
Cow position: chr13:36244737-36244356 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 41, 241

Conread position: 10-286
Cow position: chr13:34018216-34017933 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 112

Conread position: 17-303
Cow position: chr13:32794887-32795179 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 191
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 143

Conread position: 30-370
Cow position: chr13:26588888-26588536 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 224
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 50

Conread position: 56-369
Cow position: chr13:47729260-47729584 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 207
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 56-371
Cow position: chr13:644747-644421 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 67, 132

Conread position: 56-371
Cow position: chr13:34322732-34322412 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 74

Conread position: 56-371
Cow position: chr13:51006798-51006472 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 210
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 67, 0

Conread position: 59-371
Cow position: chr13:11750552-11750231 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 115, 54

Conread position: 62-371
Cow position: chr13:21401079-21401397 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 205
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 36

Conread position: 64-323
Cow position: chr13:29518725-29518988 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 67, 153

Conread position: 75-337
Cow position: chr13:6360111-6360383 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 75-371
Cow position: chr13:43891478-43891785 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 195
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 82-368
Cow position: chr13:30275163-30274881 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 213
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 37, 116

Conread position: 84-394
Cow position: chr13:48644559-48644875 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 70

Conread position: 84-395
Cow position: chr13:9300425-9300743 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 212
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 36, 44

Conread position: 84-395
Cow position: chr13:31609183-31608868 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 36, 44

Conread position: 89-371
Cow position: chr13:16806855-16807148 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 192
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 91-368
Cow position: chr13:12732718-12732436 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 54

Conread position: 100-337
Cow position: chr13:13333685-13333440 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 166
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 55

Conread position: 100-360
Cow position: chr13:12563882-12564155 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 202
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 8, 69

Conread position: 102-368
Cow position: chr13:22080887-22080615 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 114-368
Cow position: chr13:49500110-49499856 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 9, 69

Conread position: 124-384
Cow position: chr13:57060310-57060570 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 176
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 5, 30

Conread position: 134-371
Cow position: chr13:44149662-44149901 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 62

Conread position: 173-404
Cow position: chr13:15883497-15883257 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 16, 165

Conread position: 187-372
Cow position: chr13:15335883-15336062 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 106, 9

Conread position: 189-339
Cow position: chr13:11138829-11138676 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 104, 9

Conread position: 199-369
Cow position: chr13:6647269-6647427 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 201-358
Cow position: chr13:44427410-44427250 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 62

Conread position: 208-369
Cow position: chr13:21586927-21587096 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 76, 116

Conread position: 211-371
Cow position: chr13:55891808-55891969 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 51

Conread position: 214-368
Cow position: chr13:9328688-9328843 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 84

Conread position: 218-381
Cow position: chr13:37791721-37791557 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 72, 35

Conread position: 219-371
Cow position: chr13:41567760-41567602 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 224-412
Cow position: chr13:34921367-34921557 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 50

Show alignments to all cow chromosomes.