Cow genome map
| Conread name: | mAY1-MI-P-AY1-npy-f-02-0-UI.s1 |
| Conread position: | 1-371 |
| Cow position: | chr14:44889193-44888809 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 2-295 |
| Cow position: | chr14:30713742-30713442 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 287 |
| Conread position: | 2-330 |
| Cow position: | chr14:2288297-2288641 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-336 |
| Cow position: | chr14:32449001-32449355 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-337 |
| Cow position: | chr14:5531376-5531726 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-337 |
| Cow position: | chr14:11151873-11151525 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 37 |
| Conread position: | 2-337 |
| Cow position: | chr14:49327451-49327113 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 121, 45 |
| Conread position: | 2-369 |
| Cow position: | chr14:11475248-11474875 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 2-370 |
| Cow position: | chr14:37226198-37226593 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-370 |
| Cow position: | chr14:46123169-46123538 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 2-371 |
| Cow position: | chr14:749561-749177 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr14:1660493-1660877 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr14:9450493-9450108 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 37, 239 |
| Conread position: | 2-371 |
| Cow position: | chr14:12741003-12740628 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 2-371 |
| Cow position: | chr14:13580870-13581253 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr14:16997998-16997618 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr14:17489287-17488902 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr14:19326218-19325836 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 8 |
| Conread position: | 2-371 |
| Cow position: | chr14:19549236-19549620 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 271 |
| Conread position: | 2-371 |
| Cow position: | chr14:22104516-22104136 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 157 |
| Conread position: | 2-371 |
| Cow position: | chr14:32584989-32584604 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr14:34668748-34668363 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr14:45087245-45087627 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 151 |
| Conread position: | 2-371 |
| Cow position: | chr14:46222122-46222507 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr14:50113407-50113791 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 2-395 |
| Cow position: | chr14:16917688-16917284 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-428 |
| Cow position: | chr14:23255300-23254867 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 2-428 |
| Cow position: | chr14:29045640-29045202 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 390 |
| Conread position: | 5-291 |
| Cow position: | chr14:34634832-34634548 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 5-333 |
| Cow position: | chr14:45026913-45026570 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 5-356 |
| Cow position: | chr14:46968867-46968513 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 50, 109 |
| Conread position: | 6-294 |
| Cow position: | chr14:3210628-3210918 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 111, 45 |
| Conread position: | 7-367 |
| Cow position: | chr14:49218383-49218749 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 73 |
| Conread position: | 9-223 |
| Cow position: | chr14:43835251-43835469 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 79 |
| Conread position: | 10-368 |
| Cow position: | chr14:19313158-19312797 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 11-308 |
| Cow position: | chr14:31391008-31390701 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 43, 193 |
| Conread position: | 30-252 |
| Cow position: | chr14:18809814-18810034 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 89, 118 |
| Conread position: | 54-343 |
| Cow position: | chr14:13096563-13096851 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 63, 111 |
| Conread position: | 56-333 |
| Cow position: | chr14:27041284-27041001 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 64-371 |
| Cow position: | chr14:45191095-45191402 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 62 |
| Conread position: | 75-337 |
| Cow position: | chr14:9046952-9047224 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 75-356 |
| Cow position: | chr14:10421544-10421263 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 82-365 |
| Cow position: | chr14:11133020-11133318 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 45 |
| Conread position: | 84-333 |
| Cow position: | chr14:40344662-40344919 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 84-371 |
| Cow position: | chr14:17689251-17689550 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 92-370 |
| Cow position: | chr14:46302035-46302326 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 107-371 |
| Cow position: | chr14:47415503-47415769 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 120-368 |
| Cow position: | chr14:21047498-21047249 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 121-368 |
| Cow position: | chr14:12802434-12802183 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 162, 47 |
| Conread position: | 148-371 |
| Cow position: | chr14:41445195-41445426 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 160-386 |
| Cow position: | chr14:13543569-13543795 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 6, 45 |
| Conread position: | 173-359 |
| Cow position: | chr14:36172546-36172731 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 241-371 |
| Cow position: | chr14:31709143-31709281 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 254-377 |
| Cow position: | chr14:32527545-32527418 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.