Cow genome map
| Conread name: | mAY1-MI-P-AY1-npy-f-02-0-UI.s1 |
| Conread position: | 1-339 |
| Cow position: | chr15:32844736-32844394 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 1-370 |
| Cow position: | chr15:7270381-7270765 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 39, 239 |
| Conread position: | 1-370 |
| Cow position: | chr15:49198469-49198857 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 138 |
| Conread position: | 1-371 |
| Cow position: | chr15:443748-443363 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 244 |
| Conread position: | 1-371 |
| Cow position: | chr15:5497096-5497478 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 39, 192 |
| Conread position: | 2-295 |
| Cow position: | chr15:3837421-3837121 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 287 |
| Conread position: | 2-330 |
| Cow position: | chr15:3891607-3891950 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-337 |
| Cow position: | chr15:20405694-20405346 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-337 |
| Cow position: | chr15:24297235-24297584 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-342 |
| Cow position: | chr15:17295052-17295403 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 2-348 |
| Cow position: | chr15:8101497-8101859 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 2-350 |
| Cow position: | chr15:27748051-27748413 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 36, 131 |
| Conread position: | 2-370 |
| Cow position: | chr15:2900210-2899830 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr15:4768238-4768605 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 114 |
| Conread position: | 2-370 |
| Cow position: | chr15:6153888-6153506 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr15:15345063-15344679 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr15:20412640-20413019 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 130 |
| Conread position: | 2-370 |
| Cow position: | chr15:36941345-36940963 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 2-370 |
| Cow position: | chr15:42938951-42939335 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 2-371 |
| Cow position: | chr15:2663428-2663813 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:4387794-4388172 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 18, 132 |
| Conread position: | 2-371 |
| Cow position: | chr15:7565045-7565428 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:7848391-7848776 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:13429864-13430249 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:14580105-14579720 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:18265721-18265336 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:21534088-21533705 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 189 |
| Conread position: | 2-371 |
| Cow position: | chr15:21663703-21663317 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 2-371 |
| Cow position: | chr15:25131996-25132381 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:25204965-25204580 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:27635469-27635854 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:28488082-28487702 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 158 |
| Conread position: | 2-371 |
| Cow position: | chr15:31270830-31270446 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 2-371 |
| Cow position: | chr15:33123423-33123808 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:35273184-35273558 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 2-371 |
| Cow position: | chr15:36330416-36330035 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr15:42531962-42532346 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-371 |
| Cow position: | chr15:52976997-52977382 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-373 |
| Cow position: | chr15:20457094-20457477 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 149 |
| Conread position: | 2-395 |
| Cow position: | chr15:35751255-35750849 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 2-395 |
| Cow position: | chr15:51219782-51220187 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-428 |
| Cow position: | chr15:480621-481059 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-428 |
| Cow position: | chr15:18229106-18229541 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 387 |
| Conread position: | 5-267 |
| Cow position: | chr15:21805032-21805300 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 59 |
| Conread position: | 5-286 |
| Cow position: | chr15:33640332-33640045 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 5-343 |
| Cow position: | chr15:13538816-13538487 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 253 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 45, 150 |
| Conread position: | 5-370 |
| Cow position: | chr15:7309947-7310320 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 68 |
| Conread position: | 5-371 |
| Cow position: | chr15:42944562-42944182 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 48, 148 |
| Conread position: | 6-350 |
| Cow position: | chr15:32491844-32491485 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 6-371 |
| Cow position: | chr15:2014545-2014921 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 47, 234 |
| Conread position: | 6-371 |
| Cow position: | chr15:4727250-4727632 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 7-369 |
| Cow position: | chr15:35737834-35738194 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 52 |
| Conread position: | 9-371 |
| Cow position: | chr15:5939620-5939243 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 206 |
| Conread position: | 15-371 |
| Cow position: | chr15:28468485-28468856 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 163 |
| Conread position: | 17-366 |
| Cow position: | chr15:11847635-11847984 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 46 |
| Conread position: | 18-395 |
| Cow position: | chr15:21829993-21830383 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 177 |
| Conread position: | 26-281 |
| Cow position: | chr15:29011542-29011804 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 56-338 |
| Cow position: | chr15:313694-313413 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 56-371 |
| Cow position: | chr15:11269102-11269428 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 56-371 |
| Cow position: | chr15:25070393-25070069 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 56-371 |
| Cow position: | chr15:52208641-52208965 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 59-371 |
| Cow position: | chr15:22129172-22129490 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 75-369 |
| Cow position: | chr15:46551971-46551663 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 75-371 |
| Cow position: | chr15:23709394-23709087 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 76-371 |
| Cow position: | chr15:3792776-3792470 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 77-367 |
| Cow position: | chr15:48286985-48287279 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 82-368 |
| Cow position: | chr15:16343695-16343402 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 84-370 |
| Cow position: | chr15:44072575-44072872 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 44 |
| Conread position: | 84-371 |
| Cow position: | chr15:16514195-16514487 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 42, 270 |
| Conread position: | 84-371 |
| Cow position: | chr15:31754698-31754400 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 89-370 |
| Cow position: | chr15:4924297-4924588 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 93-368 |
| Cow position: | chr15:33991510-33991230 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 100-371 |
| Cow position: | chr15:21636417-21636699 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 124-375 |
| Cow position: | chr15:42729111-42729351 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 144-356 |
| Cow position: | chr15:30474469-30474255 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 172-370 |
| Cow position: | chr15:40109007-40109207 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 173-338 |
| Cow position: | chr15:22289874-22289705 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 173-367 |
| Cow position: | chr15:24119696-24119887 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 173, 22 |
| Conread position: | 190-339 |
| Cow position: | chr15:21946686-21946535 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 190-370 |
| Cow position: | chr15:9522967-9522779 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 46 |
| Conread position: | 192-402 |
| Cow position: | chr15:262134-262346 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 6, 16 |
Show alignments to all cow chromosomes.