Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-293
Cow position: chr16:29739386-29739088 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 32

Conread position: 1-350
Cow position: chr16:15980694-15980330 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 243
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 46, 82

Conread position: 1-368
Cow position: chr16:34207582-34207960 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 255
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 48, 125

Conread position: 2-294
Cow position: chr16:47787651-47787950 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 194
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 287

Conread position: 2-295
Cow position: chr16:53446078-53445778 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 194
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 287

Conread position: 2-333
Cow position: chr16:625068-625403 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 218
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 110

Conread position: 2-337
Cow position: chr16:21188927-21189277 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-350
Cow position: chr16:10439944-10440296 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 242
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 16

Conread position: 2-368
Cow position: chr16:25934851-25935228 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 245
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 21

Conread position: 2-369
Cow position: chr16:26665410-26665791 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 16

Conread position: 2-370
Cow position: chr16:1565978-1565600 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 38, 129

Conread position: 2-370
Cow position: chr16:2409199-2408818 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 129

Conread position: 2-370
Cow position: chr16:2481423-2481041 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 183

Conread position: 2-370
Cow position: chr16:7674766-7674383 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr16:8814411-8814024 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 250
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 2-370
Cow position: chr16:23985003-23985387 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr16:27731689-27731305 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 254
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 38, 0

Conread position: 2-370
Cow position: chr16:40294477-40294094 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 245
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 45, 95

Conread position: 2-370
Cow position: chr16:54323627-54323243 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 133

Conread position: 2-371
Cow position: chr16:838975-839361 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 235

Conread position: 2-371
Cow position: chr16:2725529-2725145 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr16:3010532-3010913 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 47, 173

Conread position: 2-371
Cow position: chr16:3144699-3144321 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 251
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 18

Conread position: 2-371
Cow position: chr16:3149331-3148953 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 251
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 18

Conread position: 2-371
Cow position: chr16:3331607-3331987 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 127

Conread position: 2-371
Cow position: chr16:7466306-7466691 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr16:11284914-11285291 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 240
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 158

Conread position: 2-371
Cow position: chr16:12536253-12535861 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 256
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 132

Conread position: 2-371
Cow position: chr16:15186762-15187144 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr16:20277546-20277931 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr16:23876831-23876452 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 51, 120

Conread position: 2-371
Cow position: chr16:24622005-24621620 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 50, 0

Conread position: 2-371
Cow position: chr16:25343669-25344055 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 257
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr16:25455769-25455385 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 250
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr16:28168625-28168240 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 47, 0

Conread position: 2-371
Cow position: chr16:28194607-28194223 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 348

Conread position: 2-371
Cow position: chr16:31587003-31586617 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 244
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 38, 317

Conread position: 2-371
Cow position: chr16:34505390-34505776 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 2-371
Cow position: chr16:41032996-41033380 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 244
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 190

Conread position: 2-371
Cow position: chr16:41161771-41161392 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 160

Conread position: 2-371
Cow position: chr16:47403076-47403461 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 47, 0

Conread position: 2-371
Cow position: chr16:51086475-51086860 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 248
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 31

Conread position: 2-371
Cow position: chr16:52525924-52526309 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 131

Conread position: 2-373
Cow position: chr16:41165066-41164686 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 250
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 38, 257

Conread position: 2-381
Cow position: chr16:49254558-49254148 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 273
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 37, 57

Conread position: 2-397
Cow position: chr16:43895570-43895162 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 270
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 38, 387

Conread position: 5-337
Cow position: chr16:26991253-26990905 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 231
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 35, 138

Conread position: 5-368
Cow position: chr16:30073089-30073461 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 241
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 44, 184

Conread position: 5-370
Cow position: chr16:37479155-37478784 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 246
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 118, 58

Conread position: 5-371
Cow position: chr16:4388432-4388815 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 5-394
Cow position: chr16:10826276-10825894 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 18

Conread position: 6-368
Cow position: chr16:22852702-22853070 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 65

Conread position: 6-371
Cow position: chr16:4425790-4426168 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 244
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 32, 40

Conread position: 7-371
Cow position: chr16:25087308-25087687 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 240
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 126

Conread position: 9-333
Cow position: chr16:5528889-5529227 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 217
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 330

Conread position: 9-348
Cow position: chr16:7159471-7159824 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 238
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 192

Conread position: 9-370
Cow position: chr16:36164469-36164836 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 242
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 75

Conread position: 9-371
Cow position: chr16:45800470-45800843 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 78

Conread position: 10-355
Cow position: chr16:23719688-23719336 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 64

Conread position: 10-371
Cow position: chr16:15811769-15812146 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 247
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 30, 123

Conread position: 17-236
Cow position: chr16:55599505-55599738 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 193

Conread position: 53-371
Cow position: chr16:25443625-25443954 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 218
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 8

Conread position: 56-370
Cow position: chr16:416652-416970 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 102

Conread position: 56-371
Cow position: chr16:15569524-15569847 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 64, 72

Conread position: 56-371
Cow position: chr16:26092142-26091816 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 205
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 57-348
Cow position: chr16:42058747-42059033 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 108

Conread position: 57-370
Cow position: chr16:23464663-23464971 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 121

Conread position: 57-371
Cow position: chr16:15538215-15538521 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 110, 71

Conread position: 57-371
Cow position: chr16:54085715-54086022 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 60, 140

Conread position: 58-394
Cow position: chr16:26424179-26423840 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 70

Conread position: 71-337
Cow position: chr16:49171313-49171038 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 46

Conread position: 74-394
Cow position: chr16:52474245-52473919 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 48, 100

Conread position: 84-370
Cow position: chr16:12161499-12161203 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 44

Conread position: 84-371
Cow position: chr16:20969019-20968722 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 197
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 90-371
Cow position: chr16:11744326-11744618 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 188
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 101-367
Cow position: chr16:8804142-8804420 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 66, 0

Conread position: 120-390
Cow position: chr16:52390177-52390461 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 133-371
Cow position: chr16:28269008-28268768 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 151

Conread position: 135-368
Cow position: chr16:16359747-16359987 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 32, 90

Conread position: 141-371
Cow position: chr16:24210551-24210314 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 163
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 19, 13

Conread position: 163-368
Cow position: chr16:15046776-15046569 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 130, 32

Conread position: 172-370
Cow position: chr16:31620813-31620605 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 0

Conread position: 173-371
Cow position: chr16:18092663-18092459 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 23, 10

Conread position: 187-368
Cow position: chr16:34309283-34309465 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 109, 16

Conread position: 189-354
Cow position: chr16:44864698-44864533 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 157, 94

Conread position: 189-378
Cow position: chr16:6385363-6385558 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 94, 9

Conread position: 207-395
Cow position: chr16:49766966-49767160 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 7, 160

Show alignments to all cow chromosomes.