Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-337
Cow position: chr17:4062589-4062941 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 224
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 1-337
Cow position: chr17:15141080-15140735 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 220
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 128

Conread position: 1-366
Cow position: chr17:3606454-3606099 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 250
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 37, 250

Conread position: 1-370
Cow position: chr17:18100824-18100439 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 132

Conread position: 1-371
Cow position: chr17:11785149-11785523 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 242
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 122, 35

Conread position: 2-280
Cow position: chr17:24784427-24784713 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 185
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 2-330
Cow position: chr17:40563-40906 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 2-330
Cow position: chr17:16903143-16903482 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 226
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 38, 131

Conread position: 2-369
Cow position: chr17:2264446-2264829 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-370
Cow position: chr17:13930152-13930534 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr17:14242085-14242469 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 255
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr17:16855837-16855457 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 252
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 38, 141

Conread position: 2-370
Cow position: chr17:25738558-25738941 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 210

Conread position: 2-371
Cow position: chr17:3742421-3742806 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr17:6070795-6071175 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 45, 131

Conread position: 2-371
Cow position: chr17:13418661-13419041 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 235

Conread position: 2-371
Cow position: chr17:14214776-14214392 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 243
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 51, 140

Conread position: 2-371
Cow position: chr17:15438056-15438442 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 251
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 2-371
Cow position: chr17:15709732-15709356 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 231
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 51, 276

Conread position: 2-371
Cow position: chr17:20098053-20097676 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 60

Conread position: 2-371
Cow position: chr17:20233008-20233392 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 148

Conread position: 2-371
Cow position: chr17:22107385-22107000 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 252
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr17:27792522-27792137 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr17:29825704-29825324 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 160

Conread position: 2-395
Cow position: chr17:15327544-15327939 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 262
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-398
Cow position: chr17:17127228-17127637 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 258
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 390

Conread position: 2-428
Cow position: chr17:5307478-5307043 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 284
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 51, 391

Conread position: 2-478
Cow position: chr17:16119970-16119481 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 304
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 37, 128

Conread position: 5-370
Cow position: chr17:732231-731848 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 5-371
Cow position: chr17:8210915-8211298 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 244
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 5-371
Cow position: chr17:18124675-18124294 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 239
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 5-394
Cow position: chr17:18593494-18593896 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 113

Conread position: 6-337
Cow position: chr17:147195-147539 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 218
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 6-369
Cow position: chr17:31950261-31949889 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 252
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 43, 8

Conread position: 6-371
Cow position: chr17:15808236-15808617 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 248
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 6-371
Cow position: chr17:23322163-23321785 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 247
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 123

Conread position: 10-237
Cow position: chr17:19806675-19806442 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 10-371
Cow position: chr17:24027723-24027352 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 239
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 30, 69

Conread position: 12-371
Cow position: chr17:15852991-15853366 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 242
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 28, 123

Conread position: 57-268
Cow position: chr17:20572053-20572272 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 94

Conread position: 75-337
Cow position: chr17:2176320-2176587 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 117

Conread position: 75-371
Cow position: chr17:4297250-4297547 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 197
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 70, 51

Conread position: 84-371
Cow position: chr17:24291984-24292274 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 196
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 44

Conread position: 89-337
Cow position: chr17:14030495-14030237 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 176
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 56

Conread position: 89-371
Cow position: chr17:43990830-43991122 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 193
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 91-371
Cow position: chr17:3314453-3314741 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 191
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 39

Conread position: 102-370
Cow position: chr17:8222053-8222331 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 18, 26

Conread position: 102-370
Cow position: chr17:28025715-28025436 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 184
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 218

Conread position: 121-371
Cow position: chr17:16050181-16049940 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 167, 12

Conread position: 122-371
Cow position: chr17:4481494-4481246 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 166
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 161

Conread position: 155-394
Cow position: chr17:24307939-24308188 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 138, 75

Conread position: 172-371
Cow position: chr17:1536981-1536781 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 106, 149

Conread position: 173-368
Cow position: chr17:23280553-23280352 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 21, 0

Conread position: 173-394
Cow position: chr17:16668368-16668143 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 5, 24

Conread position: 190-370
Cow position: chr17:15017081-15017253 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 149, 86

Conread position: 198-336
Cow position: chr17:14908672-14908526 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 392-535
Cow position: chr17:18384031-18383879 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 33, 145

Show alignments to all cow chromosomes.