Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-371
Cow position: chr18:32165453-32165071 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 243
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 52, 159

Conread position: 1-371
Cow position: chr18:52630772-52630397 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 124

Conread position: 2-295
Cow position: chr18:30762481-30762181 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 192
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 287

Conread position: 2-305
Cow position: chr18:390996-390686 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 201
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 80, 197

Conread position: 2-319
Cow position: chr18:1956692-1956360 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 212
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 2-333
Cow position: chr18:16081002-16081348 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 2-336
Cow position: chr18:37508445-37508790 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 107

Conread position: 2-337
Cow position: chr18:5202003-5202353 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-337
Cow position: chr18:28929114-28928764 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 229
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 45, 140

Conread position: 2-350
Cow position: chr18:20691706-20691358 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 240
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 47, 115

Conread position: 2-350
Cow position: chr18:25922869-25923224 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 231
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-367
Cow position: chr18:51460364-51459983 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 45, 165

Conread position: 2-369
Cow position: chr18:26244101-26243722 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 242
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 190

Conread position: 2-370
Cow position: chr18:5535471-5535840 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 248
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr18:16092295-16092679 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr18:23702606-23702222 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr18:29864128-29863745 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 38, 17

Conread position: 2-370
Cow position: chr18:36511097-36511477 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 253
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr18:40483483-40483855 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 247
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 38, 157

Conread position: 2-370
Cow position: chr18:51484074-51484453 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 248
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr18:54032187-54032571 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr18:603980-603603 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 110

Conread position: 2-371
Cow position: chr18:3755421-3755806 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr18:10221507-10221891 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 51, 140

Conread position: 2-371
Cow position: chr18:11272371-11271984 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 227
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr18:18215985-18216370 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr18:23801502-23801884 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 18

Conread position: 2-371
Cow position: chr18:28969810-28969425 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr18:32437625-32437241 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 247
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr18:35295652-35296028 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 241
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 291

Conread position: 2-371
Cow position: chr18:37701012-37700632 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 242
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 157

Conread position: 2-371
Cow position: chr18:51344581-51344966 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 36, 0

Conread position: 2-371
Cow position: chr18:51662626-51663011 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr18:55417201-55417586 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 2-395
Cow position: chr18:16174130-16173731 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 263
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 131

Conread position: 3-371
Cow position: chr18:16870760-16871134 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 239
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 39, 153

Conread position: 5-366
Cow position: chr18:44023968-44024344 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 22

Conread position: 5-370
Cow position: chr18:52655294-52655672 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 250
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 100

Conread position: 5-371
Cow position: chr18:14422749-14423127 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 234

Conread position: 5-371
Cow position: chr18:17960495-17960114 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 0

Conread position: 5-378
Cow position: chr18:43336536-43336154 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 16

Conread position: 6-395
Cow position: chr18:54066562-54066167 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 256
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 103

Conread position: 20-365
Cow position: chr18:33138530-33138197 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 36, 100

Conread position: 30-368
Cow position: chr18:48480693-48480364 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 231
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 55

Conread position: 56-371
Cow position: chr18:29070963-29071289 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 209
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 56-371
Cow position: chr18:47744286-47744612 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 211
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 57-281
Cow position: chr18:36783866-36784095 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 166
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 67, 108

Conread position: 57-378
Cow position: chr18:20288343-20288013 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 110, 57

Conread position: 57-394
Cow position: chr18:35655421-35655768 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 222

Conread position: 58-370
Cow position: chr18:16663286-16662947 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 109, 68

Conread position: 59-381
Cow position: chr18:22481039-22481361 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 63, 41

Conread position: 82-371
Cow position: chr18:45657628-45657342 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 223
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 102, 35

Conread position: 82-378
Cow position: chr18:27601729-27602024 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 227
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 35, 68

Conread position: 89-368
Cow position: chr18:31381632-31381917 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 62

Conread position: 89-371
Cow position: chr18:37336009-37336299 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 22, 40

Conread position: 122-332
Cow position: chr18:56453753-56453534 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 198

Conread position: 123-370
Cow position: chr18:28211184-28210928 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 175
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 45, 116

Conread position: 130-371
Cow position: chr18:35853911-35853661 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 37, 139

Conread position: 133-368
Cow position: chr18:26649417-26649662 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 133-368
Cow position: chr18:34576631-34576382 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 72

Conread position: 136-371
Cow position: chr18:25957386-25957631 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 137-371
Cow position: chr18:17943159-17943403 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 165
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 168-378
Cow position: chr18:19337583-19337790 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 11

Conread position: 173-365
Cow position: chr18:40055707-40055908 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 165
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 19, 7

Conread position: 176-370
Cow position: chr18:26359415-26359226 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 178, 59

Conread position: 176-371
Cow position: chr18:17091750-17091946 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 21, 118

Conread position: 195-371
Cow position: chr18:4909566-4909388 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 136, 0

Conread position: 195-426
Cow position: chr18:23072391-23072157 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 84, 127

Conread position: 198-370
Cow position: chr18:19543853-19543683 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 150, 42

Show alignments to all cow chromosomes.