Cow genome map
| Conread name: | mAY1-MI-P-AY1-npy-f-02-0-UI.s1 |
| Conread position: | 1-311 |
| Cow position: | chr21:33358649-33358344 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 39 |
| Conread position: | 1-337 |
| Cow position: | chr21:21786235-21786575 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 1-367 |
| Cow position: | chr21:3956942-3956580 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 22 |
| Conread position: | 1-370 |
| Cow position: | chr21:44763406-44763021 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 132 |
| Conread position: | 1-371 |
| Cow position: | chr21:6966911-6966533 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 161 |
| Conread position: | 1-371 |
| Cow position: | chr21:44531755-44532132 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 2-337 |
| Cow position: | chr21:2538593-2538243 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-368 |
| Cow position: | chr21:2665582-2665205 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 148 |
| Conread position: | 2-370 |
| Cow position: | chr21:1076835-1077216 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 352 |
| Conread position: | 2-370 |
| Cow position: | chr21:5019702-5020084 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 2-370 |
| Cow position: | chr21:26401196-26400826 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 118, 45 |
| Conread position: | 2-370 |
| Cow position: | chr21:30564312-30564691 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr21:30596532-30596149 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr21:41774-42157 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 52, 136 |
| Conread position: | 2-371 |
| Cow position: | chr21:148704-149089 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr21:2879270-2878886 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 2-371 |
| Cow position: | chr21:4078604-4078984 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr21:4186501-4186888 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 194 |
| Conread position: | 2-371 |
| Cow position: | chr21:4481853-4482238 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:7063113-7062728 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:10852822-10853206 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 2-371 |
| Cow position: | chr21:13112836-13112451 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:15398419-15398034 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:17143233-17143619 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr21:19352306-19351921 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 191 |
| Conread position: | 2-371 |
| Cow position: | chr21:25189199-25189583 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:27620941-27620554 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:32397494-32397109 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 178 |
| Conread position: | 2-371 |
| Cow position: | chr21:33256111-33256496 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr21:41797166-41796781 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-371 |
| Cow position: | chr21:47647892-47648279 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 5-337 |
| Cow position: | chr21:27611203-27611549 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 5-365 |
| Cow position: | chr21:15924755-15925115 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 5-368 |
| Cow position: | chr21:37085704-37086075 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 185 |
| Conread position: | 5-370 |
| Cow position: | chr21:1195102-1195478 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 5-371 |
| Cow position: | chr21:26616349-26615980 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 58 |
| Conread position: | 5-371 |
| Cow position: | chr21:36375548-36375929 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 235 |
| Conread position: | 5-371 |
| Cow position: | chr21:37373786-37374166 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 155 |
| Conread position: | 5-371 |
| Cow position: | chr21:42916353-42916733 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 5-428 |
| Cow position: | chr21:2513411-2513838 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 35, 155 |
| Conread position: | 6-371 |
| Cow position: | chr21:39225495-39225119 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 7-291 |
| Cow position: | chr21:43642058-43641771 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 10-355 |
| Cow position: | chr21:21291906-21291548 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 48, 78 |
| Conread position: | 10-371 |
| Cow position: | chr21:45640697-45640364 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 17-394 |
| Cow position: | chr21:47972571-47972175 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 283 |
| Conread position: | 23-368 |
| Cow position: | chr21:42453508-42453861 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 48-371 |
| Cow position: | chr21:4880826-4880495 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 54-294 |
| Cow position: | chr21:30872375-30872616 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 23 |
| Conread position: | 56-371 |
| Cow position: | chr21:47976623-47976949 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 58-332 |
| Cow position: | chr21:44874779-44874502 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 82-358 |
| Cow position: | chr21:45845530-45845241 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 69 |
| Conread position: | 82-368 |
| Cow position: | chr21:11328258-11327965 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 84-371 |
| Cow position: | chr21:21171662-21171369 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 98 |
| Conread position: | 89-371 |
| Cow position: | chr21:1285603-1285316 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 101 |
| Conread position: | 100-371 |
| Cow position: | chr21:28258330-28258612 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 109-371 |
| Cow position: | chr21:45298919-45298654 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 204 |
| Conread position: | 122-371 |
| Cow position: | chr21:3922944-3923203 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 130-368 |
| Cow position: | chr21:28892848-28893088 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 133-370 |
| Cow position: | chr21:35586046-35586290 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 136-371 |
| Cow position: | chr21:4899271-4899023 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 149-306 |
| Cow position: | chr21:46172944-46173099 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 15 |
| Conread position: | 153-304 |
| Cow position: | chr21:4967850-4967695 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 187-371 |
| Cow position: | chr21:49349239-49349422 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 128, 90 |
| Conread position: | 191-369 |
| Cow position: | chr21:404838-404656 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 192-369 |
| Cow position: | chr21:1708483-1708671 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 395-535 |
| Cow position: | chr21:34540076-34540216 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 14, 25 |
Show alignments to all cow chromosomes.