Cow genome map
| Conread name: | mAY1-MI-P-AY1-npy-f-02-0-UI.s1 |
| Conread position: | 1-356 |
| Cow position: | chr24:18867475-18867116 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 121, 44 |
| Conread position: | 1-368 |
| Cow position: | chr24:27586246-27586619 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 124 |
| Conread position: | 1-371 |
| Cow position: | chr24:6463437-6463817 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 133 |
| Conread position: | 2-337 |
| Cow position: | chr24:16559836-16559486 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-344 |
| Cow position: | chr24:38640608-38640959 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 81, 129 |
| Conread position: | 2-350 |
| Cow position: | chr24:19884762-19885125 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-350 |
| Cow position: | chr24:20284875-20284515 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 2-370 |
| Cow position: | chr24:146129-145752 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 89 |
| Conread position: | 2-370 |
| Cow position: | chr24:6411948-6412329 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr24:23093575-23093192 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr24:23096313-23095930 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr24:29189755-29190139 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr24:208533-208152 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 36, 158 |
| Conread position: | 2-371 |
| Cow position: | chr24:6021611-6021227 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 2-371 |
| Cow position: | chr24:6078909-6079283 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 125, 31 |
| Conread position: | 2-371 |
| Cow position: | chr24:6326900-6326518 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 2-371 |
| Cow position: | chr24:6440221-6440605 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 213 |
| Conread position: | 2-371 |
| Cow position: | chr24:7064031-7064418 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr24:12466710-12467091 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 2-371 |
| Cow position: | chr24:12698549-12698164 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr24:13190640-13191020 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 234 |
| Conread position: | 2-371 |
| Cow position: | chr24:13234708-13235092 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 238 |
| Conread position: | 2-371 |
| Cow position: | chr24:14195394-14195009 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr24:14759349-14759734 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 2-371 |
| Cow position: | chr24:17323161-17323546 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr24:19689112-19688729 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 118 |
| Conread position: | 2-371 |
| Cow position: | chr24:20366834-20367215 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 207 |
| Conread position: | 2-371 |
| Cow position: | chr24:21248479-21248094 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr24:25371403-25371788 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr24:31380886-31381270 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 125 |
| Conread position: | 2-371 |
| Cow position: | chr24:40551092-40551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 3-371 |
| Cow position: | chr24:41535650-41535282 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 80 |
| Conread position: | 3-374 |
| Cow position: | chr24:11570692-11570323 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 5-350 |
| Cow position: | chr24:6199590-6199940 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 50, 201 |
| Conread position: | 5-371 |
| Cow position: | chr24:3328576-3328220 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 130, 48 |
| Conread position: | 5-371 |
| Cow position: | chr24:6963320-6963702 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 5-371 |
| Cow position: | chr24:16082016-16081634 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 5-371 |
| Cow position: | chr24:16647433-16647051 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 5-371 |
| Cow position: | chr24:18268015-18267639 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 7-369 |
| Cow position: | chr24:41004957-41005330 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 153 |
| Conread position: | 11-370 |
| Cow position: | chr24:40467939-40467565 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 56-333 |
| Cow position: | chr24:12148573-12148290 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 132 |
| Conread position: | 56-369 |
| Cow position: | chr24:33986001-33986325 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 56-370 |
| Cow position: | chr24:8606855-8607179 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 56-371 |
| Cow position: | chr24:14381762-14381436 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 67, 124 |
| Conread position: | 56-371 |
| Cow position: | chr24:34373118-34373444 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 73-304 |
| Cow position: | chr24:6696674-6696911 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 84-371 |
| Cow position: | chr24:15295381-15295677 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 27, 273 |
| Conread position: | 84-371 |
| Cow position: | chr24:43906008-43906306 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 102-371 |
| Cow position: | chr24:17038888-17039151 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 113-378 |
| Cow position: | chr24:10591145-10591419 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 121-370 |
| Cow position: | chr24:20122433-20122184 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 53, 43 |
| Conread position: | 149-368 |
| Cow position: | chr24:24790266-24790491 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 151-367 |
| Cow position: | chr24:19890545-19890765 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 142, 22 |
| Conread position: | 156-370 |
| Cow position: | chr24:6190858-6190635 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 173-371 |
| Cow position: | chr24:24734857-24734656 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 102, 17 |
| Conread position: | 195-394 |
| Cow position: | chr24:22322733-22322933 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 164 |
| Conread position: | 217-369 |
| Cow position: | chr24:29405459-29405300 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 94 |
Show alignments to all cow chromosomes.