Cow genome map
| Conread name: | mAY1-MI-P-AY1-npy-f-02-0-UI.s1 |
| Conread position: | 1-243 |
| Cow position: | chr29:21301164-21301421 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 109 |
| Conread position: | 1-368 |
| Cow position: | chr29:40611473-40611090 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 174 |
| Conread position: | 1-371 |
| Cow position: | chr29:33560997-33560621 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 111 |
| Conread position: | 1-371 |
| Cow position: | chr29:45206903-45207289 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 233 |
| Conread position: | 2-333 |
| Cow position: | chr29:43518793-43518445 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 134 |
| Conread position: | 2-337 |
| Cow position: | chr29:14209156-14208807 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-337 |
| Cow position: | chr29:31764435-31764782 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 51, 159 |
| Conread position: | 2-367 |
| Cow position: | chr29:2692842-2693218 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-367 |
| Cow position: | chr29:13019085-13019458 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 2-368 |
| Cow position: | chr29:20253559-20253944 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 130 |
| Conread position: | 2-369 |
| Cow position: | chr29:13922899-13923282 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-369 |
| Cow position: | chr29:19656296-19656675 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-369 |
| Cow position: | chr29:21267058-21267426 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 2-370 |
| Cow position: | chr29:2102238-2102623 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr29:2838944-2838560 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr29:8624800-8624420 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr29:23979101-23979487 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-370 |
| Cow position: | chr29:25930124-25929743 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 188 |
| Conread position: | 2-370 |
| Cow position: | chr29:26162443-26162059 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 36, 130 |
| Conread position: | 2-370 |
| Cow position: | chr29:35274627-35274247 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr29:39077322-39076940 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 81 |
| Conread position: | 2-371 |
| Cow position: | chr29:46066-45683 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 2-371 |
| Cow position: | chr29:408866-408485 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr29:608236-607860 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 51, 152 |
| Conread position: | 2-371 |
| Cow position: | chr29:2464478-2464094 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 51, 153 |
| Conread position: | 2-371 |
| Cow position: | chr29:4199790-4200169 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 166 |
| Conread position: | 2-371 |
| Cow position: | chr29:5785205-5785590 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr29:7428719-7428338 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr29:7846787-7847166 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 158 |
| Conread position: | 2-371 |
| Cow position: | chr29:13584610-13584993 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 151 |
| Conread position: | 2-371 |
| Cow position: | chr29:13899058-13899443 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr29:15624310-15623925 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 25, 291 |
| Conread position: | 2-371 |
| Cow position: | chr29:15967161-15966776 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 2-371 |
| Cow position: | chr29:16037021-16036637 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 36, 270 |
| Conread position: | 2-371 |
| Cow position: | chr29:16346598-16346983 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr29:19525896-19525512 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 2-371 |
| Cow position: | chr29:19620874-19620491 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr29:31095195-31094809 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 2-371 |
| Cow position: | chr29:32557353-32556967 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr29:34795467-34795082 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 262 |
| Conread position: | 2-371 |
| Cow position: | chr29:35299312-35299697 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr29:40293728-40294109 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 158 |
| Conread position: | 2-371 |
| Cow position: | chr29:42256582-42256201 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 2-371 |
| Cow position: | chr29:43325907-43326277 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 2-371 |
| Cow position: | chr29:45461626-45462010 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 38, 130 |
| Conread position: | 2-372 |
| Cow position: | chr29:32542542-32542914 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 2-395 |
| Cow position: | chr29:21226373-21226778 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 163 |
| Conread position: | 2-423 |
| Cow position: | chr29:6263608-6263182 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-428 |
| Cow position: | chr29:28657977-28657543 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 386 |
| Conread position: | 3-350 |
| Cow position: | chr29:39049194-39048838 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 209 |
| Conread position: | 3-394 |
| Cow position: | chr29:5398690-5399089 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 389 |
| Conread position: | 5-337 |
| Cow position: | chr29:19889972-19890315 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 35, 117 |
| Conread position: | 5-338 |
| Cow position: | chr29:29702969-29702630 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 5-370 |
| Cow position: | chr29:10645016-10644635 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 5-370 |
| Cow position: | chr29:10845351-10845731 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 48, 170 |
| Conread position: | 5-427 |
| Cow position: | chr29:27977425-27976999 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 283 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 46, 124 |
| Conread position: | 5-428 |
| Cow position: | chr29:32514723-32515152 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 7-368 |
| Cow position: | chr29:20465697-20466070 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 67 |
| Conread position: | 7-370 |
| Cow position: | chr29:4518301-4518673 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 7-370 |
| Cow position: | chr29:40500591-40500214 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 7-371 |
| Cow position: | chr29:530001-529622 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 33, 126 |
| Conread position: | 9-367 |
| Cow position: | chr29:22991066-22990699 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 9-394 |
| Cow position: | chr29:37043199-37042806 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 203 |
| Conread position: | 16-371 |
| Cow position: | chr29:1477858-1478229 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 56-370 |
| Cow position: | chr29:5239844-5240168 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 64, 72 |
| Conread position: | 57-246 |
| Cow position: | chr29:12574013-12574208 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 71-248 |
| Cow position: | chr29:44402783-44402962 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 82-350 |
| Cow position: | chr29:18006624-18006349 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 117 |
| Conread position: | 84-370 |
| Cow position: | chr29:6933971-6934267 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 54 |
| Conread position: | 132-378 |
| Cow position: | chr29:27304174-27304420 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 67 |
| Conread position: | 173-369 |
| Cow position: | chr29:21203645-21203835 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 176, 97 |
| Conread position: | 173-371 |
| Cow position: | chr29:29335743-29335545 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 175-368 |
| Cow position: | chr29:39434036-39433838 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 188-367 |
| Cow position: | chr29:2417657-2417479 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 160, 87 |
| Conread position: | 202-370 |
| Cow position: | chr29:321826-321647 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 227-368 |
| Cow position: | chr29:12574478-12574627 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 270-393 |
| Cow position: | chr29:44404381-44404504 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 78, 14 |
Show alignments to all cow chromosomes.