Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-295
Cow position: chr4:32214286-32214587 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 191
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 288

Conread position: 1-295
Cow position: chr4:41473731-41473430 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 194
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 288

Conread position: 1-356
Cow position: chr4:50807567-50807935 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 239
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 48, 343

Conread position: 1-365
Cow position: chr4:50871453-50871088 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 235
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 56, 80

Conread position: 1-371
Cow position: chr4:9040057-9040441 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 39, 269

Conread position: 1-395
Cow position: chr4:6488257-6487850 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 262
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 39, 141

Conread position: 2-268
Cow position: chr4:55259402-55259130 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 182
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 47, 121

Conread position: 2-280
Cow position: chr4:35306695-35306416 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 187
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 131

Conread position: 2-306
Cow position: chr4:57986131-57986450 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 2-333
Cow position: chr4:58812598-58812944 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 221
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 2-337
Cow position: chr4:25597374-25597025 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 225
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 2-337
Cow position: chr4:43317536-43317188 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-368
Cow position: chr4:357995-358377 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-369
Cow position: chr4:161282-161657 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 246
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 22

Conread position: 2-369
Cow position: chr4:3355850-3355466 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 131

Conread position: 2-369
Cow position: chr4:16061393-16061775 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 246
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 2-370
Cow position: chr4:1048140-1047756 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr4:2350605-2350221 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr4:3448908-3449291 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 103

Conread position: 2-370
Cow position: chr4:4378505-4378887 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 258
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr4:33070727-33070346 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr4:43883228-43883609 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 253
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 38, 130

Conread position: 2-370
Cow position: chr4:46712484-46712101 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 253
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 38, 152

Conread position: 2-370
Cow position: chr4:48028973-48029357 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr4:67382401-67382782 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 255
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 18

Conread position: 2-371
Cow position: chr4:3127933-3128311 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 236
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 287

Conread position: 2-371
Cow position: chr4:6267101-6266717 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 238

Conread position: 2-371
Cow position: chr4:17034390-17034006 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 264

Conread position: 2-371
Cow position: chr4:18336835-18336450 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr4:18815484-18815103 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 34

Conread position: 2-371
Cow position: chr4:21573878-21574258 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 158

Conread position: 2-371
Cow position: chr4:36898492-36898873 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 36, 202

Conread position: 2-371
Cow position: chr4:41956878-41957259 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 244
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 131

Conread position: 2-371
Cow position: chr4:54811749-54811365 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 190

Conread position: 2-371
Cow position: chr4:58622414-58622029 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr4:61241396-61241778 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 25, 132

Conread position: 2-371
Cow position: chr4:63000256-63000637 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 242
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 158

Conread position: 2-387
Cow position: chr4:4418163-4418563 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 127

Conread position: 2-428
Cow position: chr4:1928510-1928076 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 287
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 38, 190

Conread position: 5-367
Cow position: chr4:58456559-58456185 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 66

Conread position: 5-368
Cow position: chr4:47639334-47639702 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 251
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 53, 118

Conread position: 5-370
Cow position: chr4:531998-532372 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 239
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 268

Conread position: 5-370
Cow position: chr4:33495676-33496056 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 251
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 35, 92

Conread position: 5-371
Cow position: chr4:605738-606107 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 243
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 116

Conread position: 5-371
Cow position: chr4:5487267-5486896 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 18

Conread position: 5-371
Cow position: chr4:13463926-13464309 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 5-371
Cow position: chr4:25348528-25348900 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 98

Conread position: 5-371
Cow position: chr4:40216956-40217338 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 245
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 5-371
Cow position: chr4:41961017-41961394 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 153

Conread position: 5-428
Cow position: chr4:6864113-6863685 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 284
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 128

Conread position: 6-370
Cow position: chr4:43897580-43897212 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 246
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 126

Conread position: 6-371
Cow position: chr4:34620806-34620434 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 240
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 34, 86

Conread position: 7-365
Cow position: chr4:63426955-63426585 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 243
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 72, 0

Conread position: 8-280
Cow position: chr4:36811444-36811725 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 182
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 71, 126

Conread position: 9-371
Cow position: chr4:16640730-16641108 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 252
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 31, 124

Conread position: 9-371
Cow position: chr4:54036072-54036434 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 108, 133

Conread position: 10-368
Cow position: chr4:54195379-54195742 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 264
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 48, 117

Conread position: 17-245
Cow position: chr4:14200297-14200528 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 15, 194

Conread position: 29-366
Cow position: chr4:31536-31882 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 244
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 44

Conread position: 56-371
Cow position: chr4:30473604-30473930 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 56-371
Cow position: chr4:30577897-30578223 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 209
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 57-367
Cow position: chr4:13498367-13498688 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 63, 71

Conread position: 57-369
Cow position: chr4:15653886-15653567 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 58, 20

Conread position: 57-370
Cow position: chr4:44381400-44381096 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 150, 55

Conread position: 57-371
Cow position: chr4:35185288-35184976 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 98, 63

Conread position: 57-394
Cow position: chr4:46016413-46016069 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 58-394
Cow position: chr4:67649895-67649535 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 244
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 73, 92

Conread position: 60-297
Cow position: chr4:33199197-33198951 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 107, 7

Conread position: 60-371
Cow position: chr4:34711687-34712009 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 215
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 60, 68

Conread position: 61-243
Cow position: chr4:51978363-51978543 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 56

Conread position: 67-368
Cow position: chr4:1308424-1308735 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 83

Conread position: 75-371
Cow position: chr4:44779003-44778697 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 198
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 75-371
Cow position: chr4:47056237-47055930 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 51

Conread position: 75-371
Cow position: chr4:66636106-66635808 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 217
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 47, 75

Conread position: 82-371
Cow position: chr4:33293334-33293048 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 18

Conread position: 85-371
Cow position: chr4:60626318-60626023 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 192
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 89-371
Cow position: chr4:51606570-51606277 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 192
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 39

Conread position: 90-356
Cow position: chr4:41336715-41336990 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 85, 10

Conread position: 90-371
Cow position: chr4:12239010-12238731 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 187
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 30, 38

Conread position: 97-292
Cow position: chr4:43655479-43655684 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 25, 0

Conread position: 100-371
Cow position: chr4:55272353-55272638 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 190
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 28

Conread position: 102-371
Cow position: chr4:5755075-5755340 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 5

Conread position: 107-371
Cow position: chr4:6613922-6613655 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 108-370
Cow position: chr4:35001583-35001313 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 98

Conread position: 109-371
Cow position: chr4:43621235-43621498 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 22, 88

Conread position: 132-370
Cow position: chr4:17876215-17876464 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 136-422
Cow position: chr4:59558172-59557890 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 32, 123

Conread position: 137-371
Cow position: chr4:45269159-45268916 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 137-411
Cow position: chr4:46578439-46578721 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 30, 108

Conread position: 155-369
Cow position: chr4:2227706-2227483 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 158
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 173-394
Cow position: chr4:2600632-2600419 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 164
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 175, 62

Conread position: 191-368
Cow position: chr4:43002112-43001931 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 91, 131

Conread position: 198-355
Cow position: chr4:18474572-18474414 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 78

Conread position: 198-394
Cow position: chr4:41156345-41156536 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 14, 71

Conread position: 210-371
Cow position: chr4:20680830-20680998 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 110

Conread position: 231-378
Cow position: chr4:185505-185653 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 0

Conread position: 395-586
Cow position: chr4:49683017-49682820 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 40

Show alignments to all cow chromosomes.