Cow genome map
| Conread name: | mAY1-MI-P-AY1-npy-f-02-0-UI.s1 |
| Conread position: | 1-338 |
| Cow position: | chr5:13701315-13701658 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 1-371 |
| Cow position: | chr5:4964162-4963782 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 248 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 39, 215 |
| Conread position: | 1-371 |
| Cow position: | chr5:5105435-5105821 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-229 |
| Cow position: | chr5:5391729-5391960 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 168 |
| Conread position: | 2-295 |
| Cow position: | chr5:4879194-4879494 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 287 |
| Conread position: | 2-336 |
| Cow position: | chr5:18703873-18704219 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 131 |
| Conread position: | 2-337 |
| Cow position: | chr5:4602725-4603075 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-337 |
| Cow position: | chr5:64779792-64779442 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-340 |
| Cow position: | chr5:18275207-18275555 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 38, 84 |
| Conread position: | 2-350 |
| Cow position: | chr5:49520928-49521294 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 2-354 |
| Cow position: | chr5:54822911-54822554 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 123 |
| Conread position: | 2-367 |
| Cow position: | chr5:51745439-51745815 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 36, 120 |
| Conread position: | 2-368 |
| Cow position: | chr5:59145585-59145968 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 2-368 |
| Cow position: | chr5:69623785-69624153 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 2-370 |
| Cow position: | chr5:1339709-1339328 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 2-370 |
| Cow position: | chr5:18559191-18558807 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-370 |
| Cow position: | chr5:44710168-44709784 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-370 |
| Cow position: | chr5:51167091-51166711 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 2-370 |
| Cow position: | chr5:73486709-73486327 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr5:444736-445116 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 162 |
| Conread position: | 2-371 |
| Cow position: | chr5:3501912-3501531 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr5:5925749-5925364 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-371 |
| Cow position: | chr5:6586249-6585864 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 36, 175 |
| Conread position: | 2-371 |
| Cow position: | chr5:7276045-7276430 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 2-371 |
| Cow position: | chr5:10514062-10513677 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 51, 239 |
| Conread position: | 2-371 |
| Cow position: | chr5:14544089-14543705 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 2-371 |
| Cow position: | chr5:18120261-18119882 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 51, 246 |
| Conread position: | 2-371 |
| Cow position: | chr5:18249272-18249655 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr5:23958112-23957730 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 2-371 |
| Cow position: | chr5:24100863-24101247 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 209 |
| Conread position: | 2-371 |
| Cow position: | chr5:26076988-26076603 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr5:30156570-30156955 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-371 |
| Cow position: | chr5:42506974-42507356 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 131 |
| Conread position: | 2-371 |
| Cow position: | chr5:47341935-47342310 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-371 |
| Cow position: | chr5:49118130-49117754 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 276 |
| Conread position: | 2-371 |
| Cow position: | chr5:54786898-54786510 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 31, 133 |
| Conread position: | 2-371 |
| Cow position: | chr5:58142027-58141646 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 150 |
| Conread position: | 2-371 |
| Cow position: | chr5:58198235-58198607 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 2-371 |
| Cow position: | chr5:71622088-71621703 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 2-373 |
| Cow position: | chr5:70532192-70531811 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 2-395 |
| Cow position: | chr5:3788439-3788845 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 2-395 |
| Cow position: | chr5:27177855-27178265 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 21, 391 |
| Conread position: | 2-395 |
| Cow position: | chr5:46736068-46735662 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 45, 142 |
| Conread position: | 2-428 |
| Cow position: | chr5:38661545-38661978 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 385 |
| Conread position: | 2-428 |
| Cow position: | chr5:45180881-45180442 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 387 |
| Conread position: | 5-285 |
| Cow position: | chr5:51946394-51946687 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 5-311 |
| Cow position: | chr5:12232388-12232700 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 5-324 |
| Cow position: | chr5:10854601-10854267 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 5-348 |
| Cow position: | chr5:63091746-63092100 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 130 |
| Conread position: | 5-370 |
| Cow position: | chr5:20567715-20568076 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 5-370 |
| Cow position: | chr5:48806235-48805855 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 5-371 |
| Cow position: | chr5:25929471-25929093 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 5-371 |
| Cow position: | chr5:49222281-49221896 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 150 |
| Conread position: | 5-398 |
| Cow position: | chr5:27196865-27196459 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 9-368 |
| Cow position: | chr5:57949050-57949414 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 59, 207 |
| Conread position: | 9-370 |
| Cow position: | chr5:53944056-53944427 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 157 |
| Conread position: | 12-371 |
| Cow position: | chr5:49815756-49816132 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 196 |
| Conread position: | 15-394 |
| Cow position: | chr5:49155206-49154815 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 278 |
| Conread position: | 56-369 |
| Cow position: | chr5:27550188-27549865 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 56-371 |
| Cow position: | chr5:50390849-50390522 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 75-371 |
| Cow position: | chr5:4016591-4016285 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 75-371 |
| Cow position: | chr5:50688102-50688409 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 75-428 |
| Cow position: | chr5:9003821-9003464 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 309 |
| Conread position: | 82-368 |
| Cow position: | chr5:67621529-67621819 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 201, 38 |
| Conread position: | 82-371 |
| Cow position: | chr5:37734670-37734970 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 125 |
| Conread position: | 88-380 |
| Cow position: | chr5:60734120-60734414 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 45 |
| Conread position: | 97-322 |
| Cow position: | chr5:8392610-8392834 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 25, 53 |
| Conread position: | 121-371 |
| Cow position: | chr5:56960896-56961159 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 122-355 |
| Cow position: | chr5:43188727-43188495 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 123-371 |
| Cow position: | chr5:32775151-32775409 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 130-378 |
| Cow position: | chr5:49075240-49074999 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 136, 34 |
| Conread position: | 130-395 |
| Cow position: | chr5:21945058-21945323 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 134-367 |
| Cow position: | chr5:55392140-55392366 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 134-371 |
| Cow position: | chr5:76052292-76052073 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 9 |
| Conread position: | 135-399 |
| Cow position: | chr5:59113819-59113553 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 148, 250 |
| Conread position: | 137-371 |
| Cow position: | chr5:37610589-37610345 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 137-371 |
| Cow position: | chr5:52823854-52823610 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 148-371 |
| Cow position: | chr5:7058371-7058603 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 190-395 |
| Cow position: | chr5:5716643-5716436 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 7, 187 |
| Conread position: | 208-368 |
| Cow position: | chr5:54783804-54783979 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.