Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-252
Cow position: chr6:5112716-5112458 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 56, 13

Conread position: 1-370
Cow position: chr6:35874361-35873978 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 253
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 133

Conread position: 1-370
Cow position: chr6:50570550-50570936 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 257
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 48, 132

Conread position: 1-371
Cow position: chr6:28002032-28001645 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 39, 0

Conread position: 1-371
Cow position: chr6:28702358-28701974 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 6, 0

Conread position: 1-371
Cow position: chr6:35723761-35724135 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 39, 205

Conread position: 2-295
Cow position: chr6:25803643-25803343 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 195
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 287

Conread position: 2-337
Cow position: chr6:16050938-16050590 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 229
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 127

Conread position: 2-337
Cow position: chr6:50486444-50486094 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-361
Cow position: chr6:38874308-38873936 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 248
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 133

Conread position: 2-367
Cow position: chr6:7138981-7138609 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 234
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 158

Conread position: 2-369
Cow position: chr6:3486044-3485665 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 250
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-369
Cow position: chr6:62577832-62577449 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 242
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 0

Conread position: 2-370
Cow position: chr6:916395-916777 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 38, 258

Conread position: 2-370
Cow position: chr6:8204529-8204914 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 2-370
Cow position: chr6:8536950-8536559 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 252
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 2-370
Cow position: chr6:16592323-16592702 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr6:24241641-24242025 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr6:25216653-25217033 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr6:28135285-28135668 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr6:28171257-28171637 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 21, 33

Conread position: 2-370
Cow position: chr6:66561880-66562261 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 248
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 128

Conread position: 2-371
Cow position: chr6:49222-48837 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr6:1508151-1507775 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 239
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 127

Conread position: 2-371
Cow position: chr6:1796313-1795932 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 45, 129

Conread position: 2-371
Cow position: chr6:2377054-2377439 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:3887156-3886771 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 37, 131

Conread position: 2-371
Cow position: chr6:5750282-5750667 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 2-371
Cow position: chr6:10043569-10043950 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 241
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr6:11870577-11870196 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 162

Conread position: 2-371
Cow position: chr6:12663963-12663580 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 268

Conread position: 2-371
Cow position: chr6:13309031-13308650 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr6:13849428-13849808 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 241
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 68, 57

Conread position: 2-371
Cow position: chr6:13979113-13979498 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:14133392-14133008 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:17595935-17595550 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 2-371
Cow position: chr6:20351739-20351354 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:25375741-25375356 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 47, 131

Conread position: 2-371
Cow position: chr6:27152090-27151705 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:27527636-27527251 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 250
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 36, 131

Conread position: 2-371
Cow position: chr6:28186483-28186098 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:28400894-28400516 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 120

Conread position: 2-371
Cow position: chr6:28489215-28488830 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 37, 0

Conread position: 2-371
Cow position: chr6:31813647-31813262 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:34128810-34129192 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 152

Conread position: 2-371
Cow position: chr6:37386932-37387315 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:39332178-39331795 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 247
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr6:39349743-39350128 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:41390102-41389717 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:43620082-43620466 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 159

Conread position: 2-371
Cow position: chr6:46296623-46297008 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr6:51149291-51149677 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr6:51732432-51732817 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 141

Conread position: 2-371
Cow position: chr6:55238045-55238430 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 51, 362

Conread position: 2-371
Cow position: chr6:60378513-60378898 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 2-371
Cow position: chr6:62664126-62664510 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 238

Conread position: 2-371
Cow position: chr6:65820232-65819847 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 51, 131

Conread position: 2-371
Cow position: chr6:68029527-68029912 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 2-423
Cow position: chr6:5947426-5946993 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 284
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 132

Conread position: 2-428
Cow position: chr6:11019011-11019442 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 279
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 158

Conread position: 5-350
Cow position: chr6:51716899-51717259 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 128

Conread position: 5-350
Cow position: chr6:55901600-55901959 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 229
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 35, 127

Conread position: 5-368
Cow position: chr6:15278199-15277816 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 249
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 78

Conread position: 5-369
Cow position: chr6:9264971-9264601 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 242
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 44, 77

Conread position: 5-370
Cow position: chr6:477897-478285 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 258
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 132

Conread position: 5-370
Cow position: chr6:18913121-18912740 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 5-370
Cow position: chr6:18986373-18986750 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 245
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 150

Conread position: 5-370
Cow position: chr6:40974541-40974920 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 249
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 89

Conread position: 5-370
Cow position: chr6:55539916-55539535 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 253
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 128

Conread position: 5-371
Cow position: chr6:1536061-1536445 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 128

Conread position: 5-422
Cow position: chr6:39435566-39435138 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 282
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 35, 126

Conread position: 5-438
Cow position: chr6:183189-182748 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 282
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 150

Conread position: 6-428
Cow position: chr6:39911682-39912110 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 283
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 209

Conread position: 9-371
Cow position: chr6:17810975-17810596 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 258
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 32, 77

Conread position: 9-372
Cow position: chr6:35458480-35458107 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 240
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 89, 55

Conread position: 11-371
Cow position: chr6:329000-328624 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 240
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 17-378
Cow position: chr6:6249212-6248852 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 238
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 132

Conread position: 26-381
Cow position: chr6:24481128-24480782 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 248
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 40, 54

Conread position: 56-370
Cow position: chr6:40000047-39999722 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 64, 72

Conread position: 56-370
Cow position: chr6:42266145-42266470 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 71, 0

Conread position: 56-371
Cow position: chr6:26326017-26325691 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 207
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 56-371
Cow position: chr6:45590958-45591283 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 206
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 57-371
Cow position: chr6:7941358-7941051 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 226
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 236, 90

Conread position: 58-337
Cow position: chr6:22738285-22737997 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 18

Conread position: 58-371
Cow position: chr6:6439220-6439539 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 148

Conread position: 58-371
Cow position: chr6:18751773-18751451 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 107

Conread position: 62-371
Cow position: chr6:26668607-26668289 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 181
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 103, 62

Conread position: 75-371
Cow position: chr6:12971489-12971182 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 197
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 84-370
Cow position: chr6:21975389-21975687 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 194
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 13, 0

Conread position: 89-327
Cow position: chr6:4510001-4510240 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 173
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 33, 61

Conread position: 89-337
Cow position: chr6:51867442-51867695 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 73

Conread position: 89-378
Cow position: chr6:10522273-10521983 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 80

Conread position: 90-371
Cow position: chr6:43791129-43790843 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 141

Conread position: 96-371
Cow position: chr6:17170426-17170703 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 71, 30

Conread position: 96-371
Cow position: chr6:59618515-59618801 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 191
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 32

Conread position: 102-371
Cow position: chr6:50636745-50637025 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 187
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 26

Conread position: 109-265
Cow position: chr6:58005722-58005879 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 56

Conread position: 137-371
Cow position: chr6:35967975-35967731 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 148-305
Cow position: chr6:33904194-33904030 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 40, 12

Conread position: 159-371
Cow position: chr6:36237205-36236998 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 24

Conread position: 184-371
Cow position: chr6:23528481-23528671 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 31

Conread position: 186-371
Cow position: chr6:65944618-65944431 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 148
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 92, 66

Conread position: 190-361
Cow position: chr6:7057829-7057651 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 92, 36

Conread position: 207-371
Cow position: chr6:18463688-18463519 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 86, 0

Show alignments to all cow chromosomes.