Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 1-370
Cow position: chr7:8142531-8142147 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 259
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 39, 132

Conread position: 1-371
Cow position: chr7:24866517-24866142 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 236
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 77, 140

Conread position: 1-371
Cow position: chr7:37165304-37165689 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 256
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 52, 191

Conread position: 1-371
Cow position: chr7:45169980-45170361 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 244
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 324

Conread position: 2-295
Cow position: chr7:60465162-60465462 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 193
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 287

Conread position: 2-333
Cow position: chr7:64011867-64012213 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 223
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 2-337
Cow position: chr7:195456-195112 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 225
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 131

Conread position: 2-339
Cow position: chr7:52802153-52801804 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 229
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 51, 238

Conread position: 2-365
Cow position: chr7:5260496-5260120 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 249
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 288

Conread position: 2-370
Cow position: chr7:21989077-21989461 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr7:26927730-26927350 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 256
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 211

Conread position: 2-370
Cow position: chr7:34488361-34488742 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 246
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 122

Conread position: 2-370
Cow position: chr7:45614030-45613648 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 250
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 257

Conread position: 2-370
Cow position: chr7:55535473-55535093 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr7:113057-113441 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 240
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr7:1331971-1331587 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 246
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 51, 177

Conread position: 2-371
Cow position: chr7:6626931-6626547 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 51, 128

Conread position: 2-371
Cow position: chr7:6665943-6666327 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 240
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr7:6722475-6722861 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 254
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 364

Conread position: 2-371
Cow position: chr7:7276851-7277236 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 250
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 48, 191

Conread position: 2-371
Cow position: chr7:8337821-8338206 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr7:11461686-11461309 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 237
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 45, 274

Conread position: 2-371
Cow position: chr7:20151270-20150889 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 241
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr7:20797009-20796631 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 242
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 164

Conread position: 2-371
Cow position: chr7:21424923-21424538 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr7:26456796-26456415 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 242
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 129

Conread position: 2-371
Cow position: chr7:27099828-27099443 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 245
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 2-371
Cow position: chr7:29472896-29473271 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 254
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 81

Conread position: 2-371
Cow position: chr7:46265610-46265991 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 243
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr7:46748429-46748814 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 246
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 130

Conread position: 2-371
Cow position: chr7:54692870-54693255 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr7:60728014-60727629 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr7:61577692-61577308 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 38, 132

Conread position: 2-371
Cow position: chr7:65557976-65557592 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 151

Conread position: 2-371
Cow position: chr7:65813280-65813665 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 2-371
Cow position: chr7:66907694-66908071 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 240
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 28

Conread position: 2-371
Cow position: chr7:68853522-68853142 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 246
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 38, 158

Conread position: 2-373
Cow position: chr7:59773757-59774145 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 247
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 131

Conread position: 2-374
Cow position: chr7:21232562-21232186 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 243
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-378
Cow position: chr7:58336580-58336188 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 248
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 38, 191

Conread position: 2-395
Cow position: chr7:443815-443412 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 264
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 130

Conread position: 2-395
Cow position: chr7:34151389-34151792 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 265
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 131

Conread position: 2-441
Cow position: chr7:39096046-39095598 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 291
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 38, 156

Conread position: 3-371
Cow position: chr7:55635630-55635260 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 5-336
Cow position: chr7:34414607-34414264 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 233
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 15

Conread position: 5-336
Cow position: chr7:55040033-55039687 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 225
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 5-358
Cow position: chr7:4558639-4558267 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 151

Conread position: 5-367
Cow position: chr7:21316602-21316974 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 236
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 44, 78

Conread position: 5-370
Cow position: chr7:14136405-14136024 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 255
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 128

Conread position: 5-370
Cow position: chr7:47191294-47190915 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 249
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 35, 77

Conread position: 5-371
Cow position: chr7:1442390-1442008 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 248
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 5-371
Cow position: chr7:11421135-11420753 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 250
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 29, 128

Conread position: 5-371
Cow position: chr7:13531460-13531079 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 35, 128

Conread position: 5-371
Cow position: chr7:59559934-59559554 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 244
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 134

Conread position: 9-292
Cow position: chr7:31437620-31437903 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 32, 119

Conread position: 9-358
Cow position: chr7:54294120-54294471 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 247
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 52, 130

Conread position: 9-369
Cow position: chr7:24708372-24708002 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 166

Conread position: 12-395
Cow position: chr7:21125214-21124822 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 254
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 110

Conread position: 56-371
Cow position: chr7:46194754-46194428 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 208
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 67, 0

Conread position: 57-378
Cow position: chr7:58193847-58193534 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 212
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 64, 52

Conread position: 60-371
Cow position: chr7:24527152-24527470 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 66

Conread position: 61-370
Cow position: chr7:56007-56329 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 21

Conread position: 69-371
Cow position: chr7:4153254-4152939 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 96

Conread position: 72-371
Cow position: chr7:29745017-29744720 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 50, 42

Conread position: 73-368
Cow position: chr7:56999677-56999391 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 92

Conread position: 75-370
Cow position: chr7:54547745-54547441 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 48, 0

Conread position: 75-427
Cow position: chr7:67669571-67669921 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 253
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 56, 32

Conread position: 83-371
Cow position: chr7:59085465-59085754 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 217
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 42, 126

Conread position: 84-336
Cow position: chr7:51839728-51839993 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 84-370
Cow position: chr7:3127834-3128131 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 44

Conread position: 84-370
Cow position: chr7:40317235-40317527 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 188
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 44

Conread position: 84-371
Cow position: chr7:45946325-45946028 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 44

Conread position: 84-398
Cow position: chr7:42428130-42428450 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 212
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 81, 35

Conread position: 86-337
Cow position: chr7:39552809-39552550 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 175
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 37, 55

Conread position: 89-370
Cow position: chr7:19882940-19882648 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 39

Conread position: 91-371
Cow position: chr7:24421896-24422180 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 181
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 195

Conread position: 102-371
Cow position: chr7:38399404-38399679 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 185
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 16

Conread position: 102-373
Cow position: chr7:51287340-51287621 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 188
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 105

Conread position: 125-366
Cow position: chr7:6671747-6671497 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 75

Conread position: 130-371
Cow position: chr7:34959274-34959525 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 168
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 135-347
Cow position: chr7:62271403-62271188 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 59, 39

Conread position: 148-371
Cow position: chr7:844496-844729 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 172-367
Cow position: chr7:21228269-21228069 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 143

Conread position: 173-392
Cow position: chr7:61005330-61005554 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 174-370
Cow position: chr7:19097679-19097477 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 188-358
Cow position: chr7:31880495-31880669 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 105, 55

Conread position: 189-394
Cow position: chr7:48167551-48167763 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 94, 204

Show alignments to all cow chromosomes.