Cow genome map

Conread name: mAY1-MI-P-AY1-npy-f-02-0-UI.s1

Conread position: 2-295
Cow position: chr9:1983098-1983397 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 193
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 190

Conread position: 2-325
Cow position: chr9:22474009-22473671 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 217
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 2-326
Cow position: chr9:6921475-6921136 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 220
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 0

Conread position: 2-337
Cow position: chr9:14002322-14002669 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 228
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 121

Conread position: 2-337
Cow position: chr9:26421696-26421346 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 227
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 2-337
Cow position: chr9:30829035-30829381 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 229
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 120

Conread position: 2-337
Cow position: chr9:44203789-44203440 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 226
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 241

Conread position: 2-340
Cow position: chr9:1741559-1741220 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 234
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 43

Conread position: 2-350
Cow position: chr9:10856298-10856662 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 247
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 36, 135

Conread position: 2-369
Cow position: chr9:5627096-5627481 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 252
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 2-369
Cow position: chr9:30674350-30674737 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 249
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 131

Conread position: 2-369
Cow position: chr9:45875799-45876182 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 2-370
Cow position: chr9:5006256-5006636 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:6251550-6251934 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:16177874-16178258 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 249
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:17303687-17303309 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 129

Conread position: 2-370
Cow position: chr9:18507547-18507161 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 260
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:18538943-18539327 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 247
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 38, 0

Conread position: 2-370
Cow position: chr9:19157001-19156621 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 36, 131

Conread position: 2-370
Cow position: chr9:27037390-27037771 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 250
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:28024090-28024478 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 251
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 18

Conread position: 2-370
Cow position: chr9:28658769-28658386 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:31809862-31810242 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 248
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-370
Cow position: chr9:59480569-59480185 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr9:203011-202626 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 242
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr9:1072006-1071621 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 240
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr9:1098873-1099258 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 251
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 131

Conread position: 2-371
Cow position: chr9:1249714-1249333 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 120

Conread position: 2-371
Cow position: chr9:2680854-2681239 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 241
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr9:2807077-2806695 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 243
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 339

Conread position: 2-371
Cow position: chr9:3310898-3311283 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 250
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 38, 190

Conread position: 2-371
Cow position: chr9:4941210-4940835 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 250
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 38, 117

Conread position: 2-371
Cow position: chr9:15053605-15053218 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 246
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 43, 36

Conread position: 2-371
Cow position: chr9:21411589-21411976 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 249
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr9:26738293-26738685 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 253
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 135

Conread position: 2-371
Cow position: chr9:31113436-31113818 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 152

Conread position: 2-371
Cow position: chr9:32971657-32972040 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 256
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr9:34240820-34240435 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 247
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 2-371
Cow position: chr9:35544249-35543864 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 248
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr9:43302940-43302555 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 253
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 38, 131

Conread position: 2-371
Cow position: chr9:44167874-44168254 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 251
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 88

Conread position: 2-371
Cow position: chr9:48796013-48795628 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 251
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr9:50326124-50326509 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 250
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 2-371
Cow position: chr9:52525437-52525822 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 248
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 51, 239

Conread position: 2-371
Cow position: chr9:56176054-56176434 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 242
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 51, 158

Conread position: 2-371
Cow position: chr9:56302160-56301776 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 36, 276

Conread position: 2-371
Cow position: chr9:59196135-59196519 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 38, 68

Conread position: 2-372
Cow position: chr9:22320424-22320040 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 247
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 38, 81

Conread position: 2-378
Cow position: chr9:9015354-9015745 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 260
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 38, 131

Conread position: 2-395
Cow position: chr9:20940737-20941141 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 259
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 21

Conread position: 2-395
Cow position: chr9:52409022-52408636 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 260
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 50

Conread position: 2-428
Cow position: chr9:37175084-37175519 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 283
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 51, 387

Conread position: 5-369
Cow position: chr9:5573717-5573341 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 244
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 53, 13

Conread position: 5-371
Cow position: chr9:2288852-2288468 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 245
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 139

Conread position: 5-371
Cow position: chr9:24723067-24723436 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 258
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 44, 78

Conread position: 5-392
Cow position: chr9:56042685-56042314 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 343, 53

Conread position: 5-395
Cow position: chr9:7059780-7059377 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 268
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 128

Conread position: 6-340
Cow position: chr9:55316012-55315659 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 253
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 58, 167

Conread position: 6-371
Cow position: chr9:999748-1000129 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 244
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 33, 40

Conread position: 7-369
Cow position: chr9:3545112-3545490 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 242
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 153

Conread position: 9-317
Cow position: chr9:39746130-39746435 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 208
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 75

Conread position: 9-378
Cow position: chr9:60491319-60491700 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 11-370
Cow position: chr9:22655102-22655476 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 249
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 29, 122

Conread position: 13-398
Cow position: chr9:1992245-1991847 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 263
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 27, 120

Conread position: 17-391
Cow position: chr9:4579191-4578829 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 258
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 53

Conread position: 56-370
Cow position: chr9:7005057-7005382 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 210
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 72

Conread position: 56-371
Cow position: chr9:26276996-26277318 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 204
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 57-356
Cow position: chr9:50063583-50063285 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 139

Conread position: 57-368
Cow position: chr9:20767691-20767382 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 110, 39

Conread position: 58-364
Cow position: chr9:4980600-4980909 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 228
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 64, 139

Conread position: 58-371
Cow position: chr9:5702730-5703045 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 109, 58

Conread position: 74-371
Cow position: chr9:46668435-46668134 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 201
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 5

Conread position: 75-370
Cow position: chr9:30282653-30282347 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 205
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 75-371
Cow position: chr9:50002816-50003123 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 197
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 82-308
Cow position: chr9:31675285-31675515 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 33

Conread position: 84-380
Cow position: chr9:22441862-22442162 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 198
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 104

Conread position: 89-371
Cow position: chr9:26054420-26054712 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 29

Conread position: 90-371
Cow position: chr9:52514498-52514789 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 189
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 92-394
Cow position: chr9:26188914-26189221 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 171

Conread position: 95-377
Cow position: chr9:35157872-35157582 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 24, 33

Conread position: 130-367
Cow position: chr9:29372037-29372274 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 148, 33

Conread position: 130-370
Cow position: chr9:40130325-40130565 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 160

Conread position: 131-367
Cow position: chr9:5516609-5516856 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 167
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 134-367
Cow position: chr9:8980459-8980224 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 15

Conread position: 137-350
Cow position: chr9:11339094-11338877 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 151
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 27

Conread position: 138-371
Cow position: chr9:3757410-3757167 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 147-371
Cow position: chr9:10644208-10643974 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 163-370
Cow position: chr9:200383-200177 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 185, 27

Conread position: 183-371
Cow position: chr9:35747404-35747215 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 19, 35

Conread position: 192-371
Cow position: chr9:8462723-8462538 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 145
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.