Cow genome map
| Conread name: | mAY1-MI-P-AY1-nre-h-04-0-UI.s1 |
| Conread position: | 315-477 |
| Cow position: | chrX:36796636-36796474 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 317-472 |
| Cow position: | chrX:42482536-42482690 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 318-477 |
| Cow position: | chrX:11717470-11717629 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 319-451 |
| Cow position: | chrX:16348301-16348433 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 320-468 |
| Cow position: | chrX:42998446-42998300 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 59 |
| Conread position: | 327-446 |
| Cow position: | chrX:40531782-40531900 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 327-451 |
| Cow position: | chrX:35848992-35848867 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 327-457 |
| Cow position: | chrX:878107-878236 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 329-476 |
| Cow position: | chrX:11180912-11181057 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 330-446 |
| Cow position: | chrX:9416415-9416531 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-451 |
| Cow position: | chrX:27689352-27689232 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-451 |
| Cow position: | chrX:32572867-32572986 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-477 |
| Cow position: | chrX:7910835-7910979 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 333-425 |
| Cow position: | chrX:8642284-8642192 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 334-481 |
| Cow position: | chrX:29328051-29327906 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 335-425 |
| Cow position: | chrX:31334417-31334507 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-475 |
| Cow position: | chrX:15545415-15545553 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 339-477 |
| Cow position: | chrX:11454744-11454881 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 340-474 |
| Cow position: | chrX:27516803-27516667 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 343-466 |
| Cow position: | chrX:2742074-2742194 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 344-446 |
| Cow position: | chrX:42164640-42164538 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 344-462 |
| Cow position: | chrX:21443469-21443588 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 5, 81 |
| Conread position: | 344-472 |
| Cow position: | chrX:38226537-38226665 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 344-489 |
| Cow position: | chrX:33151697-33151844 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 344-495 |
| Cow position: | chrX:10523830-10523981 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 347-451 |
| Cow position: | chrX:616014-616118 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-500 |
| Cow position: | chrX:33640272-33640120 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 61 |
| Conread position: | 355-479 |
| Cow position: | chrX:11582516-11582392 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 405-495 |
| Cow position: | chrX:19941787-19941877 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 77 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-493 |
| Cow position: | chrX:19941793-19941879 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 75 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-495 |
| Cow position: | chrX:172777-172865 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-495 |
| Cow position: | chrX:172779-172867 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 79 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-495 |
| Cow position: | chrX:172781-172869 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-495 |
| Cow position: | chrX:19941792-19941879 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 410-495 |
| Cow position: | chrX:11944111-11944026 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 75 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-491 |
| Cow position: | chrX:4165784-4165708 (view UCSC Genome Browser custom track) |
| Alignm length: | 77 |
| Alignm identity: | 70 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.