Cow genome map

Conread name: mCP0-MI-P-CP0-nvg-d-03-0-UI.s2

Conread position: 25-407
Cow position: chrX:38439067-38439456 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 10

Conread position: 25-528
Cow position: chrX:26626102-26625554 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 348

Conread position: 26-407
Cow position: chrX:19019503-19019128 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 150

Conread position: 29-574
Cow position: chrX:43730597-43730061 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 7

Conread position: 31-589
Cow position: chrX:38227495-38226932 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 5

Conread position: 31-623
Cow position: chrX:13868291-13868915 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 200

Conread position: 31-647
Cow position: chrX:30133714-30133089 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 71

Conread position: 31-653
Cow position: chrX:151497-152146 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 29

Conread position: 32-624
Cow position: chrX:12309791-12309173 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 32

Conread position: 32-655
Cow position: chrX:34441852-34441210 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 199

Conread position: 33-373
Cow position: chrX:10438055-10437715 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 144

Conread position: 33-401
Cow position: chrX:12249397-12249774 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 253

Conread position: 33-403
Cow position: chrX:7571499-7571877 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 287

Conread position: 33-404
Cow position: chrX:42462152-42461769 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 297

Conread position: 33-404
Cow position: chrX:46532924-46532526 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 212

Conread position: 33-406
Cow position: chrX:15139953-15139568 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 217

Conread position: 33-407
Cow position: chrX:3405760-3405383 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 265
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 70, 206

Conread position: 33-407
Cow position: chrX:12115637-12116024 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 176

Conread position: 33-407
Cow position: chrX:27442956-27442577 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 222

Conread position: 33-407
Cow position: chrX:35680940-35681319 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 74

Conread position: 33-407
Cow position: chrX:40452625-40452231 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 331

Conread position: 33-411
Cow position: chrX:4123432-4123821 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 63

Conread position: 33-501
Cow position: chrX:26441184-26440695 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 287

Conread position: 33-515
Cow position: chrX:44873938-44873457 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 37

Conread position: 33-543
Cow position: chrX:37232007-37232539 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 322

Conread position: 33-548
Cow position: chrX:917780-917231 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 208

Conread position: 33-555
Cow position: chrX:4044262-4043723 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 212

Conread position: 33-563
Cow position: chrX:29289172-29289730 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 0

Conread position: 33-568
Cow position: chrX:35388311-35387769 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 325

Conread position: 33-569
Cow position: chrX:17888792-17888265 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 91

Conread position: 33-570
Cow position: chrX:878774-878221 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 200

Conread position: 33-571
Cow position: chrX:8796847-8797409 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 115

Conread position: 33-573
Cow position: chrX:18695330-18694770 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 277

Conread position: 33-574
Cow position: chrX:27516130-27516681 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 57

Conread position: 33-583
Cow position: chrX:14599132-14599704 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 120

Conread position: 33-608
Cow position: chrX:5017810-5017215 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 273

Conread position: 33-624
Cow position: chrX:34238316-34238935 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 204

Conread position: 33-625
Cow position: chrX:1616461-1615845 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 337

Conread position: 33-625
Cow position: chrX:8899621-8900232 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 57

Conread position: 33-636
Cow position: chrX:15007555-15006935 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 248

Conread position: 33-637
Cow position: chrX:15486029-15485408 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 271

Conread position: 33-637
Cow position: chrX:35268489-35269081 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 225

Conread position: 33-638
Cow position: chrX:47873737-47873110 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 226

Conread position: 33-640
Cow position: chrX:40827149-40826522 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 36

Conread position: 33-644
Cow position: chrX:28847286-28846661 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 276

Conread position: 33-644
Cow position: chrX:34554331-34554956 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 186

Conread position: 33-651
Cow position: chrX:161024-161638 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 216

Conread position: 33-653
Cow position: chrX:20340293-20339654 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 50

Conread position: 33-654
Cow position: chrX:4633261-4632612 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 270

Conread position: 33-656
Cow position: chrX:4996208-4996832 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 222

Conread position: 33-656
Cow position: chrX:12290333-12290962 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 127

Conread position: 33-656
Cow position: chrX:13177864-13177240 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 18

Conread position: 33-656
Cow position: chrX:34532127-34532755 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 191

Conread position: 33-658
Cow position: chrX:17794591-17795225 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 145

Conread position: 33-659
Cow position: chrX:23564201-23563543 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 51

Conread position: 33-661
Cow position: chrX:10866271-10865621 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 201

Conread position: 33-661
Cow position: chrX:27446287-27446931 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 285

Conread position: 33-661
Cow position: chrX:34564896-34565534 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 208

Conread position: 33-661
Cow position: chrX:41879334-41878688 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 123

Conread position: 33-662
Cow position: chrX:9651450-9650782 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 173

Conread position: 33-662
Cow position: chrX:27705189-27705836 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 24

Conread position: 33-662
Cow position: chrX:38072171-38071519 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 323

Conread position: 33-662
Cow position: chrX:40481275-40480598 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 99

Conread position: 34-400
Cow position: chrX:21665994-21665621 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 198

Conread position: 34-546
Cow position: chrX:42171702-42171162 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 200

Conread position: 34-615
Cow position: chrX:13648187-13647581 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 254

Conread position: 34-640
Cow position: chrX:9252574-9251935 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 20

Conread position: 35-661
Cow position: chrX:15147583-15146947 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 93

Conread position: 36-401
Cow position: chrX:17497695-17498057 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 268

Conread position: 36-403
Cow position: chrX:13785779-13785389 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 333

Conread position: 36-407
Cow position: chrX:30543688-30543310 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 18

Conread position: 36-407
Cow position: chrX:35609585-35609967 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 270

Conread position: 36-407
Cow position: chrX:38967250-38967626 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 261

Conread position: 36-450
Cow position: chrX:11581536-11581972 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 293

Conread position: 36-559
Cow position: chrX:24424793-24424253 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 129

Conread position: 36-626
Cow position: chrX:10831913-10831267 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 526

Conread position: 36-640
Cow position: chrX:13912692-13913303 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 47

Conread position: 36-640
Cow position: chrX:34376553-34377167 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 201

Conread position: 36-640
Cow position: chrX:38094926-38094298 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 198

Conread position: 36-640
Cow position: chrX:42086461-42087054 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 185

Conread position: 36-648
Cow position: chrX:21592885-21593528 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 319

Conread position: 36-649
Cow position: chrX:38963712-38964334 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 40

Conread position: 36-652
Cow position: chrX:22115682-22115073 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 27

Conread position: 36-653
Cow position: chrX:3654208-3654844 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 40

Conread position: 36-655
Cow position: chrX:8869786-8869158 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 141

Conread position: 36-655
Cow position: chrX:15232033-15231416 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 424
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 47, 139

Conread position: 36-656
Cow position: chrX:11655676-11656322 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 332

Conread position: 36-657
Cow position: chrX:6413645-6414277 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 237

Conread position: 36-658
Cow position: chrX:6543855-6544491 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 262

Conread position: 36-658
Cow position: chrX:20888045-20887403 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 36

Conread position: 36-662
Cow position: chrX:21063896-21064537 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 53

Conread position: 37-407
Cow position: chrX:42587829-42587450 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 250

Conread position: 37-577
Cow position: chrX:28133949-28134504 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 194

Conread position: 37-602
Cow position: chrX:45967761-45968336 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 265

Conread position: 37-605
Cow position: chrX:24288313-24287740 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 194

Conread position: 37-635
Cow position: chrX:37781481-37780889 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 33

Conread position: 37-648
Cow position: chrX:22812662-22813301 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 198

Conread position: 37-650
Cow position: chrX:42994214-42994834 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 240

Conread position: 37-652
Cow position: chrX:42247574-42246939 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 7

Conread position: 37-656
Cow position: chrX:31729058-31729682 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 198

Conread position: 37-657
Cow position: chrX:31489112-31489766 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 212

Conread position: 37-657
Cow position: chrX:44192842-44192197 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 55

Conread position: 38-528
Cow position: chrX:44737390-44736883 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 185

Conread position: 39-662
Cow position: chrX:44054406-44055053 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 164

Conread position: 44-640
Cow position: chrX:37072013-37072614 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 190

Conread position: 45-496
Cow position: chrX:42508035-42507563 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 18

Conread position: 45-547
Cow position: chrX:11083006-11082486 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 190

Conread position: 45-661
Cow position: chrX:5871921-5872582 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 46-574
Cow position: chrX:34401607-34402168 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 246

Conread position: 47-640
Cow position: chrX:38218328-38218941 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 184

Conread position: 47-658
Cow position: chrX:31949320-31948688 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 89

Conread position: 49-657
Cow position: chrX:41526906-41526288 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 90

Conread position: 53-626
Cow position: chrX:15596661-15597242 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 174

Conread position: 54-569
Cow position: chrX:7718469-7718990 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 284

Conread position: 54-571
Cow position: chrX:31373195-31373696 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 176

Conread position: 57-407
Cow position: chrX:47054891-47054549 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 251
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 37, 119

Conread position: 57-660
Cow position: chrX:7178528-7179132 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 178

Conread position: 58-611
Cow position: chrX:34222370-34222912 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 370
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 50, 177

Conread position: 58-653
Cow position: chrX:25035765-25035141 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 175

Conread position: 59-407
Cow position: chrX:41743535-41743890 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 175

Conread position: 59-653
Cow position: chrX:33855618-33854985 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 95

Conread position: 63-373
Cow position: chrX:11844612-11844300 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 169

Conread position: 63-382
Cow position: chrX:7381952-7382287 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 11

Conread position: 63-407
Cow position: chrX:11718152-11717810 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 170

Conread position: 64-407
Cow position: chrX:28105553-28105898 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 140

Conread position: 64-568
Cow position: chrX:20697977-20697454 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 224

Conread position: 64-602
Cow position: chrX:34502550-34503118 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 168

Conread position: 67-640
Cow position: chrX:31250022-31250618 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 75

Conread position: 69-398
Cow position: chrX:44731233-44731567 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 5

Conread position: 75-431
Cow position: chrX:11806378-11806010 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 77

Conread position: 78-407
Cow position: chrX:37843361-37843699 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 220

Conread position: 83-661
Cow position: chrX:33466269-33466872 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 131

Conread position: 101-616
Cow position: chrX:46771300-46770758 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 194

Conread position: 101-628
Cow position: chrX:47343964-47344515 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 226

Conread position: 102-640
Cow position: chrX:5638495-5637951 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 123

Conread position: 103-568
Cow position: chrX:40558002-40557523 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 182

Conread position: 103-633
Cow position: chrX:31436154-31436690 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 189

Conread position: 103-648
Cow position: chrX:41403635-41404180 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 262

Conread position: 103-648
Cow position: chrX:41410183-41410728 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 262

Conread position: 103-650
Cow position: chrX:6234760-6234247 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 26

Conread position: 106-380
Cow position: chrX:42855088-42855366 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 248

Conread position: 106-402
Cow position: chrX:47481477-47481775 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 37, 190

Conread position: 106-404
Cow position: chrX:45089114-45089424 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 61, 153

Conread position: 106-555
Cow position: chrX:43527180-43527652 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 192

Conread position: 106-584
Cow position: chrX:33205315-33204796 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 270

Conread position: 106-636
Cow position: chrX:44396697-44397235 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 109

Conread position: 106-641
Cow position: chrX:31443143-31442610 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 43

Conread position: 106-659
Cow position: chrX:30338242-30337705 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 375
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 28, 21

Conread position: 106-660
Cow position: chrX:15545574-15546129 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 121

Conread position: 107-407
Cow position: chrX:14924678-14924979 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 146

Conread position: 110-404
Cow position: chrX:36778086-36778386 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 241

Conread position: 110-407
Cow position: chrX:10306354-10306652 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 195

Conread position: 110-655
Cow position: chrX:34454355-34454902 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 28

Conread position: 112-407
Cow position: chrX:47967283-47967579 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 81

Conread position: 112-647
Cow position: chrX:26492685-26493243 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 239

Conread position: 113-407
Cow position: chrX:28845528-28845809 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 58, 118

Conread position: 117-659
Cow position: chrX:7350990-7351547 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 132

Conread position: 122-379
Cow position: chrX:23061147-23061396 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 201
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 45, 104

Conread position: 122-401
Cow position: chrX:20709768-20710047 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 75

Conread position: 122-528
Cow position: chrX:48195340-48194918 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 22

Conread position: 129-407
Cow position: chrX:33020186-33020462 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 97

Conread position: 131-387
Cow position: chrX:19015144-19015396 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 152

Conread position: 131-661
Cow position: chrX:41238661-41238112 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 96

Conread position: 138-407
Cow position: chrX:35041931-35042203 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 210

Conread position: 149-568
Cow position: chrX:37836309-37836735 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 161

Conread position: 149-573
Cow position: chrX:17725705-17726138 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 70

Conread position: 157-407
Cow position: chrX:40647714-40647964 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 61

Conread position: 157-636
Cow position: chrX:22482953-22482465 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 147

Conread position: 157-640
Cow position: chrX:24366093-24365594 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 46

Conread position: 160-528
Cow position: chrX:46723002-46722617 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 186

Conread position: 160-658
Cow position: chrX:45598867-45598357 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 88

Conread position: 163-393
Cow position: chrX:44835074-44834845 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 0

Conread position: 164-356
Cow position: chrX:16531742-16531928 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 158
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 53, 0

Conread position: 164-387
Cow position: chrX:48227872-48227650 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 173
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 29, 120

Conread position: 164-402
Cow position: chrX:20151593-20151823 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 164-404
Cow position: chrX:42874721-42874959 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 164-407
Cow position: chrX:12018018-12018270 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 108

Conread position: 164-429
Cow position: chrX:8730822-8731088 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 183

Conread position: 164-521
Cow position: chrX:2467623-2467994 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 22

Conread position: 164-528
Cow position: chrX:45404091-45403708 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 182

Conread position: 164-621
Cow position: chrX:31294797-31294360 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 27

Conread position: 164-644
Cow position: chrX:27509277-27508792 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 128

Conread position: 164-644
Cow position: chrX:46032975-46032495 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 48

Conread position: 164-647
Cow position: chrX:40183607-40183119 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 182

Conread position: 164-650
Cow position: chrX:16762515-16763007 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 16

Conread position: 164-652
Cow position: chrX:32020379-32019893 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 126

Conread position: 164-662
Cow position: chrX:4269325-4268820 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 127

Conread position: 165-541
Cow position: chrX:19689962-19690345 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 53

Conread position: 167-404
Cow position: chrX:9997587-9997360 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 168-625
Cow position: chrX:28878415-28877953 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 108

Conread position: 168-649
Cow position: chrX:37489478-37489967 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 19

Conread position: 168-662
Cow position: chrX:25816149-25815650 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 114

Conread position: 168-662
Cow position: chrX:41673850-41674349 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 6

Conread position: 169-373
Cow position: chrX:45393369-45393170 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 51, 0

Conread position: 169-379
Cow position: chrX:42339188-42338992 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 116, 0

Conread position: 169-387
Cow position: chrX:678820-678608 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 171
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 155, 0

Conread position: 169-407
Cow position: chrX:42588924-42588690 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 9, 120

Conread position: 169-639
Cow position: chrX:23497915-23497470 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 171-629
Cow position: chrX:30921932-30922389 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 84

Conread position: 171-639
Cow position: chrX:8925453-8925907 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 119

Conread position: 174-591
Cow position: chrX:6278753-6278314 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 169

Conread position: 174-661
Cow position: chrX:27432166-27431675 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 168

Conread position: 175-648
Cow position: chrX:42381345-42380875 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 9

Conread position: 179-407
Cow position: chrX:35284375-35284598 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 179
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 104

Conread position: 180-382
Cow position: chrX:30833079-30832894 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 160
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 180-404
Cow position: chrX:39938758-39938548 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 179
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 32, 0

Conread position: 180-405
Cow position: chrX:9416934-9416717 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 180-542
Cow position: chrX:1514645-1514288 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 115

Conread position: 180-627
Cow position: chrX:34663080-34662630 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 24

Conread position: 180-640
Cow position: chrX:21663068-21663523 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 54

Conread position: 180-659
Cow position: chrX:9635422-9634945 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 102

Conread position: 181-373
Cow position: chrX:46984742-46984547 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 134

Conread position: 181-387
Cow position: chrX:2206784-2206592 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 165
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 109, 0

Conread position: 181-389
Cow position: chrX:9855060-9855265 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 163
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 161, 0

Conread position: 181-389
Cow position: chrX:9953903-9954106 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 181-404
Cow position: chrX:11455292-11455072 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 166, 37

Conread position: 181-407
Cow position: chrX:25411600-25411819 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 37

Conread position: 181-407
Cow position: chrX:37119359-37119572 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 122, 82

Conread position: 181-571
Cow position: chrX:41884656-41884252 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 279
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 225, 10

Conread position: 181-595
Cow position: chrX:16416268-16416686 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 185, 48

Conread position: 181-629
Cow position: chrX:34543547-34544003 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 75

Conread position: 181-636
Cow position: chrX:38642020-38642466 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 38

Conread position: 181-640
Cow position: chrX:27394254-27393790 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 111

Conread position: 181-640
Cow position: chrX:44961507-44961983 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 129

Conread position: 181-649
Cow position: chrX:23514258-23513765 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 57

Conread position: 181-657
Cow position: chrX:21672311-21672810 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 161

Conread position: 181-658
Cow position: chrX:38935041-38935526 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 165

Conread position: 182-631
Cow position: chrX:27514628-27515078 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 166

Conread position: 182-640
Cow position: chrX:9360644-9361110 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 83

Conread position: 183-379
Cow position: chrX:6639886-6640080 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 103

Conread position: 183-404
Cow position: chrX:42282196-42282403 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 27

Conread position: 183-640
Cow position: chrX:40035691-40035214 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 71

Conread position: 184-532
Cow position: chrX:11856194-11856551 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 8

Conread position: 184-636
Cow position: chrX:1499434-1499878 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 323
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 221, 13

Conread position: 184-636
Cow position: chrX:30421176-30420743 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 85, 34

Conread position: 185-398
Cow position: chrX:40116189-40116390 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 34, 0

Conread position: 185-399
Cow position: chrX:11589828-11589617 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 174
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 47, 33

Conread position: 185-404
Cow position: chrX:41167200-41166989 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 185-407
Cow position: chrX:17662833-17662615 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 185-541
Cow position: chrX:15814861-15815212 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 259
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 192, 88

Conread position: 185-571
Cow position: chrX:27772192-27771808 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 33

Conread position: 185-626
Cow position: chrX:4768514-4768942 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 306
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 218, 88

Conread position: 185-640
Cow position: chrX:20752027-20752434 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 317
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 19, 0

Conread position: 185-648
Cow position: chrX:42492746-42492285 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 19

Conread position: 187-404
Cow position: chrX:41198870-41199080 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 154, 107

Conread position: 187-407
Cow position: chrX:46315611-46315399 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 8, 0

Conread position: 187-640
Cow position: chrX:48010360-48010833 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 159

Conread position: 187-662
Cow position: chrX:30963106-30962625 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 86

Conread position: 190-662
Cow position: chrX:13191775-13191317 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 321
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 51, 56

Conread position: 191-403
Cow position: chrX:10959632-10959423 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 8

Conread position: 192-404
Cow position: chrX:7721755-7721964 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 150

Conread position: 192-407
Cow position: chrX:2383260-2383467 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 28

Conread position: 192-407
Cow position: chrX:37048810-37048599 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 31, 152

Conread position: 192-436
Cow position: chrX:47757158-47756921 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 240, 104

Conread position: 192-561
Cow position: chrX:5900228-5900612 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 259
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 106, 0

Conread position: 192-621
Cow position: chrX:22821818-22822264 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 149

Conread position: 192-622
Cow position: chrX:35542662-35543094 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 149

Conread position: 192-643
Cow position: chrX:38549219-38549678 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 152

Conread position: 192-647
Cow position: chrX:9201318-9201778 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 28

Conread position: 192-656
Cow position: chrX:36975720-36976192 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 93

Conread position: 192-662
Cow position: chrX:17231505-17231987 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 112

Conread position: 194-401
Cow position: chrX:48684450-48684253 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 0

Conread position: 194-407
Cow position: chrX:39558575-39558372 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 19, 99

Conread position: 195-404
Cow position: chrX:45566404-45566611 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 159
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 64, 132

Conread position: 195-574
Cow position: chrX:13382098-13382488 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 148

Conread position: 195-601
Cow position: chrX:6690474-6690072 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 90

Conread position: 195-636
Cow position: chrX:22074574-22075019 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 95

Conread position: 196-406
Cow position: chrX:43049117-43049326 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 167
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 17, 148

Conread position: 196-407
Cow position: chrX:29509669-29509463 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 196-649
Cow position: chrX:28013665-28013202 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 134

Conread position: 196-655
Cow position: chrX:1465962-1466407 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 88

Conread position: 196-658
Cow position: chrX:4750523-4750093 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 26

Conread position: 196-661
Cow position: chrX:21642703-21642232 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 22

Conread position: 197-388
Cow position: chrX:16324187-16324005 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 156
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 198-420
Cow position: chrX:16541899-16541680 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 199-407
Cow position: chrX:46073044-46072842 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 161
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 23, 114

Conread position: 199-580
Cow position: chrX:1503117-1503496 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 265
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 211, 19

Conread position: 199-649
Cow position: chrX:12980053-12979598 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 146

Conread position: 200-565
Cow position: chrX:23091660-23092027 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 92

Conread position: 200-656
Cow position: chrX:11633457-11633927 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 90

Conread position: 201-542
Cow position: chrX:37574636-37574971 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 188, 81

Conread position: 201-643
Cow position: chrX:36283125-36283571 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 146

Conread position: 201-658
Cow position: chrX:29602053-29601579 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 28

Conread position: 203-661
Cow position: chrX:48236593-48237066 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 145

Conread position: 204-374
Cow position: chrX:25036918-25036750 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 104

Conread position: 205-407
Cow position: chrX:40567383-40567580 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 0

Conread position: 206-580
Cow position: chrX:39126123-39126495 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 248
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 197, 19

Conread position: 207-643
Cow position: chrX:9425955-9425531 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 5

Conread position: 208-407
Cow position: chrX:8039597-8039800 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 75, 143

Conread position: 209-430
Cow position: chrX:27174782-27174997 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 170
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 14, 82

Conread position: 210-407
Cow position: chrX:45993001-45993201 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 119

Conread position: 210-528
Cow position: chrX:47301115-47300786 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 235
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 199, 78

Conread position: 210-623
Cow position: chrX:841947-842366 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 67

Conread position: 210-639
Cow position: chrX:29542430-29542001 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 72

Conread position: 210-662
Cow position: chrX:3579735-3580195 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 12

Conread position: 212-659
Cow position: chrX:47046729-47046265 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 276

Conread position: 213-655
Cow position: chrX:34411631-34412094 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 302
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 10, 0

Conread position: 213-660
Cow position: chrX:45110447-45110898 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 305
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 193, 110

Conread position: 214-660
Cow position: chrX:32420011-32420458 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 59

Conread position: 215-659
Cow position: chrX:46587611-46588067 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 79

Conread position: 220-407
Cow position: chrX:17908485-17908310 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 148
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 64, 0

Conread position: 220-659
Cow position: chrX:1176184-1175741 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 121

Conread position: 221-555
Cow position: chrX:43780053-43779708 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 61, 123

Conread position: 221-603
Cow position: chrX:4515467-4515879 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 287
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 51, 317

Conread position: 222-449
Cow position: chrX:4091448-4091678 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 179
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 187, 60

Conread position: 222-528
Cow position: chrX:45148975-45149285 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 124

Conread position: 224-407
Cow position: chrX:36961438-36961621 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 224-567
Cow position: chrX:40809489-40809849 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 249
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 185, 58

Conread position: 224-645
Cow position: chrX:10252379-10251969 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 15

Conread position: 224-658
Cow position: chrX:33000706-33001144 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 92

Conread position: 226-616
Cow position: chrX:47484467-47484058 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 120

Conread position: 228-463
Cow position: chrX:18195748-18195974 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 175, 54

Conread position: 229-407
Cow position: chrX:8991695-8991863 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 229-408
Cow position: chrX:45874806-45874978 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 229-648
Cow position: chrX:37540932-37541329 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 208, 71

Conread position: 231-574
Cow position: chrX:23785463-23785811 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 272

Conread position: 231-593
Cow position: chrX:44657155-44656781 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 273
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 178, 79

Conread position: 232-406
Cow position: chrX:24149450-24149618 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 50, 0

Conread position: 232-416
Cow position: chrX:1505523-1505696 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 233-404
Cow position: chrX:42235722-42235553 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 71

Conread position: 236-636
Cow position: chrX:35383205-35382818 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 105

Conread position: 237-573
Cow position: chrX:36067835-36068177 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 237
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 163, 53

Conread position: 244-404
Cow position: chrX:7336649-7336804 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 19, 50

Conread position: 244-505
Cow position: chrX:45936499-45936233 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 11, 172

Conread position: 244-647
Cow position: chrX:36060974-36061395 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 102

Conread position: 246-610
Cow position: chrX:169701-169343 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 112, 39

Conread position: 246-662
Cow position: chrX:18485619-18486053 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 300
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 96

Conread position: 248-654
Cow position: chrX:22387421-22387001 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 95

Conread position: 251-640
Cow position: chrX:34792481-34792095 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 60

Conread position: 251-651
Cow position: chrX:6407378-6407780 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 61

Conread position: 251-652
Cow position: chrX:4398955-4399358 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 90

Conread position: 251-654
Cow position: chrX:25208017-25207619 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 92

Conread position: 251-658
Cow position: chrX:14955938-14955521 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 284
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 154, 18

Conread position: 251-661
Cow position: chrX:22921143-22921570 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 19

Conread position: 251-662
Cow position: chrX:32820858-32821290 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 41

Conread position: 252-390
Cow position: chrX:41271377-41271246 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 252-602
Cow position: chrX:31252248-31252598 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 12

Conread position: 252-660
Cow position: chrX:35885899-35885484 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 30

Conread position: 253-407
Cow position: chrX:14003813-14003663 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 253-573
Cow position: chrX:46433314-46433652 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 244
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 83, 96

Conread position: 253-662
Cow position: chrX:9770853-9770436 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 95

Conread position: 255-655
Cow position: chrX:27145457-27145844 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 382, 35

Conread position: 256-396
Cow position: chrX:48385529-48385390 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 256-401
Cow position: chrX:41992207-41992070 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 80, 21

Conread position: 256-611
Cow position: chrX:14275901-14275549 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 99, 17

Conread position: 257-401
Cow position: chrX:23254378-23254234 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 91

Conread position: 258-620
Cow position: chrX:41068564-41068928 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 234
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 21

Conread position: 258-661
Cow position: chrX:27206636-27207042 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 280
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 92, 19

Conread position: 265-654
Cow position: chrX:36355959-36356347 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 136, 25

Conread position: 265-659
Cow position: chrX:46547033-46546626 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 273
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 17, 32

Conread position: 266-407
Cow position: chrX:35969238-35969107 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 32

Conread position: 267-547
Cow position: chrX:16532052-16532332 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 79, 25

Conread position: 270-528
Cow position: chrX:12218731-12218981 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 180
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 104, 0

Conread position: 272-654
Cow position: chrX:35822189-35822574 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 272
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 105, 70

Conread position: 273-404
Cow position: chrX:12405539-12405408 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 273-653
Cow position: chrX:20584170-20584552 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 278
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 25, 276

Conread position: 273-658
Cow position: chrX:5118654-5118252 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 68

Conread position: 273-662
Cow position: chrX:870314-869932 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 256
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 119, 25

Conread position: 276-527
Cow position: chrX:46788553-46788312 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 33, 0

Conread position: 276-655
Cow position: chrX:5305191-5305587 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 260
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 116, 22

Conread position: 277-387
Cow position: chrX:36314444-36314331 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 277-407
Cow position: chrX:10278666-10278790 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 58, 27

Conread position: 277-407
Cow position: chrX:36723239-36723112 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 277-409
Cow position: chrX:41764493-41764626 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 70

Conread position: 277-574
Cow position: chrX:29680409-29680099 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 65

Conread position: 277-626
Cow position: chrX:27227974-27228343 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 277-662
Cow position: chrX:44040042-44040427 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 122

Conread position: 281-565
Cow position: chrX:42873249-42873539 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 219
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 122, 5

Conread position: 281-574
Cow position: chrX:11085201-11084900 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 122, 63

Conread position: 281-640
Cow position: chrX:34313889-34314249 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 39

Conread position: 281-649
Cow position: chrX:20168414-20168792 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 114, 13

Conread position: 281-659
Cow position: chrX:29723597-29723998 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 61

Conread position: 281-660
Cow position: chrX:5919352-5919739 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 271
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 97, 61

Conread position: 282-566
Cow position: chrX:11614556-11614847 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 204
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 127, 60

Conread position: 282-594
Cow position: chrX:48646743-48646423 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 99, 64

Conread position: 283-560
Cow position: chrX:22454234-22453950 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 123, 35

Conread position: 284-402
Cow position: chrX:21566261-21566377 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 82, 60

Conread position: 284-574
Cow position: chrX:9365815-9365513 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 214
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 121, 14

Conread position: 284-611
Cow position: chrX:48183431-48183111 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 124, 27

Conread position: 286-407
Cow position: chrX:37955694-37955809 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 286-568
Cow position: chrX:48014302-48014592 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 188
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 112

Conread position: 286-574
Cow position: chrX:616401-616095 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 218
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 120, 55

Conread position: 286-652
Cow position: chrX:18204602-18204226 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 57

Conread position: 289-407
Cow position: chrX:31987003-31986883 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 31

Conread position: 289-569
Cow position: chrX:7710679-7710380 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 0

Conread position: 290-658
Cow position: chrX:41027022-41027408 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 50

Conread position: 292-626
Cow position: chrX:30840423-30840755 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 228
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 100, 42

Conread position: 292-654
Cow position: chrX:41870938-41871298 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 16, 51

Conread position: 295-649
Cow position: chrX:43115021-43115386 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 29, 48

Conread position: 296-559
Cow position: chrX:38728608-38728882 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 113, 46

Conread position: 296-658
Cow position: chrX:34315397-34315773 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 100, 11

Conread position: 297-636
Cow position: chrX:41846615-41846270 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 226
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 72, 175

Conread position: 301-659
Cow position: chrX:27946183-27945805 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 108, 45

Conread position: 304-648
Cow position: chrX:18111269-18111615 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 42

Conread position: 304-660
Cow position: chrX:40320284-40320655 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 257
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 97, 42

Conread position: 306-555
Cow position: chrX:5679685-5679428 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 83, 36

Conread position: 307-660
Cow position: chrX:4403196-4403567 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 262
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 89, 35

Conread position: 308-647
Cow position: chrX:4296945-4296589 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 32, 0

Conread position: 309-655
Cow position: chrX:24331662-24332020 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 32

Conread position: 310-637
Cow position: chrX:46022673-46023000 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 216
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 97, 37

Conread position: 311-636
Cow position: chrX:42927933-42927606 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 94, 30

Conread position: 312-636
Cow position: chrX:29229896-29230231 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 237
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 6, 30

Conread position: 313-660
Cow position: chrX:5063148-5063484 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 249
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 34, 51

Conread position: 314-659
Cow position: chrX:17949601-17949245 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 32

Conread position: 319-528
Cow position: chrX:12203494-12203279 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 90, 27

Conread position: 320-653
Cow position: chrX:24457647-24457306 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 223
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 61, 26

Conread position: 332-632
Cow position: chrX:21665316-21665016 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 191
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 223, 17

Conread position: 334-569
Cow position: chrX:25283109-25282881 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 171
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 85, 0

Conread position: 334-571
Cow position: chrX:47342047-47342275 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 334-644
Cow position: chrX:40108601-40108280 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 214
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 54

Conread position: 334-649
Cow position: chrX:13146905-13147221 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 77

Conread position: 336-661
Cow position: chrX:12095865-12095522 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 11

Conread position: 337-637
Cow position: chrX:10516165-10516479 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 39, 9

Conread position: 337-640
Cow position: chrX:33654932-33654615 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 226
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 42, 9

Conread position: 337-659
Cow position: chrX:45140005-45139684 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 10, 0

Conread position: 337-661
Cow position: chrX:34837145-34836824 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 66, 9

Conread position: 338-612
Cow position: chrX:40283036-40283323 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 67, 9

Conread position: 338-652
Cow position: chrX:13923781-13924103 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 68, 233

Conread position: 339-662
Cow position: chrX:48071072-48071412 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 73, 7

Conread position: 341-638
Cow position: chrX:6559532-6559230 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 67, 6

Conread position: 345-640
Cow position: chrX:25464180-25463884 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 194
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 33

Conread position: 345-658
Cow position: chrX:8492997-8493314 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 219
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 64, 17

Conread position: 346-593
Cow position: chrX:16575040-16575294 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 346-640
Cow position: chrX:10859381-10859085 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 200
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 80

Conread position: 349-636
Cow position: chrX:39220000-39220312 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 55, 35

Conread position: 350-662
Cow position: chrX:5134415-5134724 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 29

Conread position: 353-620
Cow position: chrX:45543262-45543543 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 361-640
Cow position: chrX:40574994-40574715 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 189
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 45, 23

Conread position: 367-640
Cow position: chrX:4109128-4109413 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 43, 0

Conread position: 368-608
Cow position: chrX:41862325-41862556 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 368-653
Cow position: chrX:7648462-7648172 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 39, 167

Conread position: 378-651
Cow position: chrX:6267631-6267909 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 88

Conread position: 384-636
Cow position: chrX:27075079-27074827 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 175
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 22, 183

Conread position: 385-652
Cow position: chrX:35392319-35392062 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 254, 37

Conread position: 385-658
Cow position: chrX:30672421-30672139 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 107, 13

Conread position: 394-653
Cow position: chrX:46532510-46532249 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 187
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 161, 18

Conread position: 394-659
Cow position: chrX:5512634-5512365 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 45

Conread position: 397-640
Cow position: chrX:27511412-27511644 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 165

Conread position: 397-640
Cow position: chrX:42432529-42432286 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 22, 99

Conread position: 397-658
Cow position: chrX:17292942-17293202 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 16, 0

Conread position: 398-637
Cow position: chrX:29478712-29478947 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 177
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 12, 0

Conread position: 398-656
Cow position: chrX:42893909-42894165 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 13, 162

Conread position: 398-659
Cow position: chrX:11763013-11762762 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 243, 16

Conread position: 398-661
Cow position: chrX:4512226-4512494 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 180
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 22

Conread position: 400-662
Cow position: chrX:35658787-35659044 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 7, 34

Conread position: 402-648
Cow position: chrX:24170737-24170489 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 154, 11

Conread position: 402-655
Cow position: chrX:23335981-23335732 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 40, 0

Conread position: 403-631
Cow position: chrX:45875384-45875609 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 146, 0

Conread position: 403-651
Cow position: chrX:48558738-48558986 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 30

Conread position: 403-656
Cow position: chrX:42450022-42449769 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 404-631
Cow position: chrX:4645920-4645695 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 143, 0

Conread position: 404-640
Cow position: chrX:3806675-3806907 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 171
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 233, 149

Conread position: 404-647
Cow position: chrX:36392198-36391952 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 8, 103

Conread position: 404-647
Cow position: chrX:42836175-42836416 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 404-650
Cow position: chrX:40532050-40531788 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 191
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 151, 0

Conread position: 404-655
Cow position: chrX:10829424-10829679 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 0

Conread position: 404-657
Cow position: chrX:19902279-19902021 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 171
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 149

Conread position: 404-660
Cow position: chrX:17956687-17956938 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 233, 6

Conread position: 404-660
Cow position: chrX:19660470-19660210 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 235

Conread position: 404-660
Cow position: chrX:47345318-47345580 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 146

Conread position: 404-661
Cow position: chrX:4559732-4559983 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 404-662
Cow position: chrX:22283830-22284089 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 8, 77

Conread position: 405-636
Cow position: chrX:1088146-1087924 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 126, 66

Conread position: 405-636
Cow position: chrX:11653759-11653991 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 60, 9

Conread position: 405-660
Cow position: chrX:32943082-32942833 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 126, 137

Conread position: 406-602
Cow position: chrX:29733597-29733392 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 149, 0

Conread position: 406-620
Cow position: chrX:32574312-32574524 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 172, 0

Conread position: 406-621
Cow position: chrX:6007670-6007884 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 406-640
Cow position: chrX:12219138-12219374 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 152
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 406-640
Cow position: chrX:44202050-44201817 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 153
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 406-647
Cow position: chrX:19469511-19469279 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 168
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 227, 139

Conread position: 406-653
Cow position: chrX:36367946-36367695 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 241

Conread position: 406-654
Cow position: chrX:41941617-41941866 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 179

Conread position: 406-655
Cow position: chrX:29050242-29050484 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 11, 69

Conread position: 406-655
Cow position: chrX:38321386-38321139 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 238, 8

Conread position: 406-656
Cow position: chrX:40175163-40175420 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 174
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 127, 56

Conread position: 406-656
Cow position: chrX:43008604-43008854 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 180
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 406-657
Cow position: chrX:36866168-36866419 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 232, 112

Conread position: 406-659
Cow position: chrX:28940235-28940491 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 12, 157

Conread position: 406-661
Cow position: chrX:37955842-37956096 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 239, 203

Conread position: 406-662
Cow position: chrX:11825649-11825393 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 146, 141

Conread position: 406-662
Cow position: chrX:36109622-36109364 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 407-613
Cow position: chrX:44660593-44660387 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 123, 53

Conread position: 407-632
Cow position: chrX:40685334-40685109 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 9, 152

Conread position: 407-639
Cow position: chrX:36393343-36393114 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 31

Conread position: 407-640
Cow position: chrX:20957234-20957465 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 220, 0

Conread position: 407-640
Cow position: chrX:25846077-25845845 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 15

Conread position: 407-640
Cow position: chrX:38560555-38560778 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 146, 0

Conread position: 407-640
Cow position: chrX:38587847-38587617 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 206, 0

Conread position: 407-647
Cow position: chrX:43152160-43151916 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 208, 0

Conread position: 407-647
Cow position: chrX:47255444-47255684 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 407-648
Cow position: chrX:44090918-44091159 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 407-648
Cow position: chrX:45254587-45254346 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 159
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 407-652
Cow position: chrX:13121934-13122184 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 120, 0

Conread position: 407-652
Cow position: chrX:47013407-47013161 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 179, 0

Conread position: 407-658
Cow position: chrX:2674961-2674710 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 164
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 63

Conread position: 407-659
Cow position: chrX:44591066-44590814 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 166
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 407-660
Cow position: chrX:44834656-44834406 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 193, 104

Conread position: 407-661
Cow position: chrX:45403550-45403296 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 407-661
Cow position: chrX:45488914-45489170 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 140, 0

Conread position: 407-661
Cow position: chrX:48473903-48474161 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 153, 0

Conread position: 407-662
Cow position: chrX:44736860-44736598 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 168
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 211, 0

Conread position: 407-662
Cow position: chrX:46793750-46793500 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 142, 0

Conread position: 407-662
Cow position: chrX:48194895-48194641 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 129, 0

Conread position: 408-616
Cow position: chrX:19965400-19965191 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 408-629
Cow position: chrX:47061393-47061603 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 15, 29

Conread position: 408-652
Cow position: chrX:27175000-27175240 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 193, 36

Conread position: 408-661
Cow position: chrX:48198651-48198399 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 170
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 7, 97

Conread position: 408-662
Cow position: chrX:35985817-35986068 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 160, 55

Conread position: 409-632
Cow position: chrX:47079625-47079847 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 213, 0

Conread position: 409-656
Cow position: chrX:37856350-37856605 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 48, 0

Conread position: 409-659
Cow position: chrX:34420732-34420983 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 161, 0

Conread position: 409-662
Cow position: chrX:6599784-6599524 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 185
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 165, 0

Conread position: 410-574
Cow position: chrX:20743603-20743768 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 145, 0

Conread position: 410-574
Cow position: chrX:37129268-37129432 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 410-613
Cow position: chrX:11859538-11859335 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 146, 87

Conread position: 410-620
Cow position: chrX:1055382-1055173 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 142, 0

Conread position: 410-624
Cow position: chrX:8731093-8731306 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 63, 0

Conread position: 410-640
Cow position: chrX:32208823-32208599 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 93, 0

Conread position: 410-640
Cow position: chrX:48003845-48004074 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 410-647
Cow position: chrX:44339322-44339086 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 151, 58

Conread position: 410-648
Cow position: chrX:26979790-26979555 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 134, 84

Conread position: 410-648
Cow position: chrX:44859865-44859626 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 155
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 0

Conread position: 410-650
Cow position: chrX:40680613-40680853 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 410-650
Cow position: chrX:48574645-48574885 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 410-651
Cow position: chrX:39290358-39290597 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 196, 130

Conread position: 410-651
Cow position: chrX:42855458-42855702 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 149, 7

Conread position: 410-656
Cow position: chrX:26205449-26205214 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 139, 0

Conread position: 410-659
Cow position: chrX:35275985-35276233 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 37, 0

Conread position: 410-660
Cow position: chrX:16984640-16984882 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 126, 0

Conread position: 410-661
Cow position: chrX:42479832-42480075 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 197, 139

Conread position: 410-662
Cow position: chrX:11844242-11843986 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 169
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 205, 0

Conread position: 410-662
Cow position: chrX:31829462-31829208 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 175, 169

Conread position: 410-662
Cow position: chrX:34505049-34504803 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 82, 8

Conread position: 410-662
Cow position: chrX:45976925-45977174 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 123, 137

Conread position: 411-556
Cow position: chrX:29501881-29501739 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 411-636
Cow position: chrX:26881565-26881338 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 114, 140

Conread position: 411-640
Cow position: chrX:24633684-24633914 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 157

Conread position: 411-652
Cow position: chrX:25036987-25037232 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 150, 0

Conread position: 411-653
Cow position: chrX:19394553-19394797 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 17, 26

Conread position: 411-654
Cow position: chrX:35431245-35430999 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 48, 116

Conread position: 411-656
Cow position: chrX:24749088-24749326 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 149, 66

Conread position: 411-660
Cow position: chrX:45413627-45413365 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 411-661
Cow position: chrX:27668958-27668712 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 150

Conread position: 412-638
Cow position: chrX:2935958-2936179 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 135, 0

Conread position: 412-639
Cow position: chrX:32910105-32910324 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 91, 0

Conread position: 412-651
Cow position: chrX:22392983-22392749 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 124, 0

Conread position: 412-660
Cow position: chrX:16836285-16836046 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 176
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 0

Conread position: 412-662
Cow position: chrX:4328182-4327930 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 206, 124

Conread position: 412-662
Cow position: chrX:12972682-12972928 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 32, 138

Conread position: 413-654
Cow position: chrX:27261193-27261432 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 64, 148

Conread position: 414-650
Cow position: chrX:24336074-24335838 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 160
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 414-657
Cow position: chrX:17524381-17524139 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 228, 0

Conread position: 414-658
Cow position: chrX:38967891-38968141 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 76

Conread position: 414-662
Cow position: chrX:18873266-18873010 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 414-662
Cow position: chrX:25049279-25049031 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 138, 133

Conread position: 414-662
Cow position: chrX:39180230-39179979 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 178
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 194, 99

Conread position: 415-648
Cow position: chrX:27380358-27380596 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 155
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 416-636
Cow position: chrX:1122538-1122323 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 54, 0

Conread position: 416-653
Cow position: chrX:19761759-19761992 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 168
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 225, 143

Conread position: 418-626
Cow position: chrX:28836901-28837098 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 422-616
Cow position: chrX:35620714-35620909 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 423-656
Cow position: chrX:29467766-29467537 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 216, 134

Conread position: 425-626
Cow position: chrX:41810154-41809961 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 133, 0

Conread position: 425-661
Cow position: chrX:24104853-24105093 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 190, 0

Conread position: 428-636
Cow position: chrX:38301826-38302038 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 143, 0

Conread position: 428-637
Cow position: chrX:3494805-3494596 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 428-649
Cow position: chrX:31479988-31480203 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 113, 59

Conread position: 428-651
Cow position: chrX:20583683-20583899 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 127, 0

Conread position: 428-652
Cow position: chrX:19356486-19356705 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 40, 58

Conread position: 428-662
Cow position: chrX:20345470-20345701 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 167
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 14, 0

Conread position: 432-640
Cow position: chrX:28067871-28068079 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 432-640
Cow position: chrX:40336932-40337139 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 42, 0

Conread position: 432-655
Cow position: chrX:19018810-19018585 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 141, 0

Conread position: 432-656
Cow position: chrX:35285194-35285420 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 433-651
Cow position: chrX:32877353-32877140 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 116, 0

Conread position: 433-662
Cow position: chrX:1719137-1719353 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 126, 0

Conread position: 434-653
Cow position: chrX:29451525-29451304 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 94, 10

Conread position: 434-656
Cow position: chrX:24425979-24425758 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 208, 0

Conread position: 434-658
Cow position: chrX:5026279-5026496 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 174, 115

Conread position: 435-660
Cow position: chrX:8759648-8759871 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 33, 13

Conread position: 435-662
Cow position: chrX:8642070-8642295 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 65, 0

Conread position: 435-662
Cow position: chrX:19717545-19717761 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 435-662
Cow position: chrX:32866899-32867119 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 125, 0

Conread position: 435-662
Cow position: chrX:41790405-41790177 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 118, 143

Conread position: 436-640
Cow position: chrX:31983560-31983350 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 137, 0

Conread position: 439-648
Cow position: chrX:11781281-11781481 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 114, 83

Conread position: 439-657
Cow position: chrX:2314591-2314373 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 441-643
Cow position: chrX:47601295-47601092 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 442-625
Cow position: chrX:47756009-47755831 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 442-654
Cow position: chrX:37749952-37749752 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 31, 36

Conread position: 442-660
Cow position: chrX:4091955-4092170 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 167, 0

Conread position: 442-660
Cow position: chrX:46909846-46910056 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 115, 0

Conread position: 443-606
Cow position: chrX:29688143-29687981 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 86

Conread position: 443-626
Cow position: chrX:31986542-31986358 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 52, 108

Conread position: 443-640
Cow position: chrX:23359079-23358889 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 29, 0

Conread position: 443-648
Cow position: chrX:40046543-40046327 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 29

Conread position: 443-656
Cow position: chrX:11454216-11454418 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 156
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 64

Conread position: 446-657
Cow position: chrX:876807-876602 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 447-640
Cow position: chrX:48822306-48822114 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 143
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 106, 0

Conread position: 447-649
Cow position: chrX:34398748-34398546 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 447-657
Cow position: chrX:33020473-33020684 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 192, 0

Conread position: 447-660
Cow position: chrX:17498358-17498571 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 447-661
Cow position: chrX:30958762-30958980 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 49, 170

Conread position: 447-662
Cow position: chrX:44995534-44995751 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 449-659
Cow position: chrX:14951315-14951106 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 97, 0

Conread position: 450-660
Cow position: chrX:35409791-35410000 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 158
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 451-626
Cow position: chrX:30824029-30824199 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 0

Conread position: 451-637
Cow position: chrX:13347313-13347494 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 0

Conread position: 451-640
Cow position: chrX:46079125-46079316 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 108, 85

Conread position: 451-641
Cow position: chrX:41858842-41858655 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 117

Conread position: 451-656
Cow position: chrX:44123295-44123494 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 188, 97

Conread position: 451-659
Cow position: chrX:19203306-19203098 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 451-660
Cow position: chrX:27270415-27270618 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 162
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 57, 110

Conread position: 453-640
Cow position: chrX:23471824-23471640 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 96, 0

Conread position: 453-655
Cow position: chrX:27442497-27442295 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 455-660
Cow position: chrX:41010942-41011138 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 90, 0

Conread position: 457-636
Cow position: chrX:8326950-8327129 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 457-656
Cow position: chrX:5487893-5487706 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 458-635
Cow position: chrX:35681614-35681790 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 91, 0

Conread position: 458-640
Cow position: chrX:27416140-27416323 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 100, 31

Conread position: 458-648
Cow position: chrX:42461571-42461391 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 55, 0

Conread position: 458-655
Cow position: chrX:16763878-16763686 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 180, 103

Conread position: 458-655
Cow position: chrX:41453349-41453545 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 185, 113

Conread position: 458-657
Cow position: chrX:42875259-42875453 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 99, 0

Conread position: 458-658
Cow position: chrX:6389128-6389325 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 458-660
Cow position: chrX:10415206-10415004 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 458-662
Cow position: chrX:597427-597228 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 458-662
Cow position: chrX:46068712-46068514 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 157
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 91, 0

Conread position: 459-639
Cow position: chrX:755972-756147 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 459-639
Cow position: chrX:41166777-41166602 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 461-639
Cow position: chrX:11602431-11602260 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 462-657
Cow position: chrX:34991415-34991606 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 0

Conread position: 463-631
Cow position: chrX:46533253-46533085 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 463-640
Cow position: chrX:1960373-1960197 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 108, 0

Conread position: 463-640
Cow position: chrX:16556165-16555995 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 0

Conread position: 463-648
Cow position: chrX:1396168-1396357 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 152, 0

Conread position: 463-649
Cow position: chrX:37752054-37751874 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 86, 0

Conread position: 463-658
Cow position: chrX:4169979-4169782 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 146
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 140, 77

Conread position: 463-658
Cow position: chrX:36468316-36468123 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 463-658
Cow position: chrX:37867305-37867500 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 463-658
Cow position: chrX:42050218-42050023 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 463-661
Cow position: chrX:31250843-31250645 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 464-621
Cow position: chrX:25347112-25347268 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 464-661
Cow position: chrX:47855034-47855226 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 464-662
Cow position: chrX:11529395-11529588 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 9, 92

Conread position: 465-648
Cow position: chrX:5915242-5915429 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 467-640
Cow position: chrX:6480540-6480367 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 467-650
Cow position: chrX:48118677-48118499 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 73, 0

Conread position: 468-640
Cow position: chrX:4444478-4444656 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 468-640
Cow position: chrX:16323961-16323787 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 468-661
Cow position: chrX:37867489-37867682 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 473-626
Cow position: chrX:10237851-10237699 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 72, 0

Conread position: 473-636
Cow position: chrX:27202632-27202793 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 473-638
Cow position: chrX:22552917-22552753 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 137, 0

Conread position: 473-647
Cow position: chrX:23485583-23485768 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 473-647
Cow position: chrX:32330228-32330406 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 34, 0

Conread position: 473-648
Cow position: chrX:11650710-11650885 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 473-651
Cow position: chrX:17525805-17525639 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 473-652
Cow position: chrX:11589305-11589127 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 79, 103

Conread position: 473-652
Cow position: chrX:15100045-15100221 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 71, 89

Conread position: 473-659
Cow position: chrX:32747794-32747968 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 165, 84

Conread position: 473-660
Cow position: chrX:3032981-3032794 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 138, 170

Conread position: 473-661
Cow position: chrX:41199286-41199471 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 152
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 34, 88

Conread position: 473-662
Cow position: chrX:12812-12992 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 473-662
Cow position: chrX:26882018-26881830 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 165, 0

Conread position: 474-636
Cow position: chrX:6640490-6640648 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 54, 0

Conread position: 474-636
Cow position: chrX:34270624-34270785 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 108, 0

Conread position: 474-640
Cow position: chrX:42760315-42760481 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 474-643
Cow position: chrX:11781514-11781675 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 88

Conread position: 474-652
Cow position: chrX:10278933-10279115 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 76, 142

Conread position: 474-653
Cow position: chrX:16801200-16801026 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 474-653
Cow position: chrX:28106910-28107087 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 95, 0

Conread position: 474-653
Cow position: chrX:39642559-39642387 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 474-656
Cow position: chrX:14925335-14925519 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 165, 0

Conread position: 474-657
Cow position: chrX:32215291-32215474 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 474-659
Cow position: chrX:1101620-1101798 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 165, 69

Conread position: 474-659
Cow position: chrX:40556396-40556215 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 84

Conread position: 474-659
Cow position: chrX:44225668-44225484 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 157, 0

Conread position: 474-661
Cow position: chrX:1938077-1938262 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 80, 0

Conread position: 474-662
Cow position: chrX:51838-51653 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 149
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 73, 0

Conread position: 474-662
Cow position: chrX:47100534-47100344 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 86, 73

Conread position: 475-635
Cow position: chrX:45759735-45759892 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 120, 86

Conread position: 475-650
Cow position: chrX:9451409-9451580 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 92, 39

Conread position: 476-647
Cow position: chrX:12197133-12197304 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 71, 134

Conread position: 476-649
Cow position: chrX:45657878-45657698 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 476-662
Cow position: chrX:14135743-14135925 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 478-655
Cow position: chrX:36260747-36260924 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 479-628
Cow position: chrX:4366408-4366561 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 90

Conread position: 479-640
Cow position: chrX:40648963-40649130 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 479-651
Cow position: chrX:5097731-5097555 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 16, 144

Conread position: 479-652
Cow position: chrX:48574289-48574113 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 479-653
Cow position: chrX:45044520-45044695 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 479-658
Cow position: chrX:41215390-41215569 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 479-661
Cow position: chrX:35840866-35841048 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 479-662
Cow position: chrX:41435481-41435292 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 76, 0

Conread position: 480-652
Cow position: chrX:43059183-43059016 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 7, 62

Conread position: 480-662
Cow position: chrX:11674178-11674362 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 0

Conread position: 481-626
Cow position: chrX:11813143-11813288 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 481-626
Cow position: chrX:39094252-39094119 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 481-636
Cow position: chrX:3494975-3494826 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 481-639
Cow position: chrX:38577715-38577871 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 481-640
Cow position: chrX:296461-296620 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 481-640
Cow position: chrX:4602868-4602710 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 481-640
Cow position: chrX:6634414-6634573 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 481-640
Cow position: chrX:25827065-25826911 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 481-644
Cow position: chrX:33678403-33678238 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 0

Conread position: 481-653
Cow position: chrX:30789461-30789288 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 72, 0

Conread position: 481-661
Cow position: chrX:44941791-44941976 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 0

Conread position: 481-662
Cow position: chrX:21839653-21839841 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 483-640
Cow position: chrX:29682039-29681890 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 483-660
Cow position: chrX:16770136-16770313 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 483-660
Cow position: chrX:34194009-34193832 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 484-640
Cow position: chrX:31279851-31279699 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 124
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 77, 0

Conread position: 485-640
Cow position: chrX:35029852-35029708 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 486-623
Cow position: chrX:25049026-25048891 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 486-636
Cow position: chrX:231943-231802 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 486-636
Cow position: chrX:4486949-4486800 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 70, 0

Conread position: 486-643
Cow position: chrX:3542931-3543096 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 486-656
Cow position: chrX:1571514-1571350 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 153, 69

Conread position: 486-660
Cow position: chrX:42506874-42506699 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 67, 158

Conread position: 487-624
Cow position: chrX:44702990-44702853 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 487-655
Cow position: chrX:11670762-11670930 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 487-661
Cow position: chrX:11517904-11517729 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 72, 0

Conread position: 488-640
Cow position: chrX:17744700-17744849 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 50

Conread position: 488-659
Cow position: chrX:19511040-19510861 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 130

Conread position: 488-660
Cow position: chrX:26720605-26720441 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 157, 73

Conread position: 489-636
Cow position: chrX:28167057-28167203 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 489-640
Cow position: chrX:35614674-35614825 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 489-652
Cow position: chrX:22864185-22864021 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 489-653
Cow position: chrX:37717800-37717964 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 152, 15

Conread position: 490-657
Cow position: chrX:47979376-47979543 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 51

Conread position: 491-651
Cow position: chrX:17929081-17929237 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 491-660
Cow position: chrX:35509599-35509432 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 492-651
Cow position: chrX:1996371-1996212 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 494-655
Cow position: chrX:42516047-42515887 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 144, 0

Conread position: 494-659
Cow position: chrX:43028315-43028479 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 143, 63

Conread position: 495-640
Cow position: chrX:37176958-37177095 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 495-661
Cow position: chrX:40108259-40108096 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 497-660
Cow position: chrX:42314806-42314641 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 136, 0

Conread position: 500-644
Cow position: chrX:39887125-39886980 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 56, 0

Conread position: 504-636
Cow position: chrX:10479842-10479974 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 504-659
Cow position: chrX:42165521-42165372 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 506-650
Cow position: chrX:42159036-42159180 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 508-645
Cow position: chrX:26367606-26367469 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 508-659
Cow position: chrX:41194002-41194153 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 110, 21

Conread position: 508-662
Cow position: chrX:36962847-36963000 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 32, 42

Conread position: 509-657
Cow position: chrX:46291243-46291388 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 27

Conread position: 517-652
Cow position: chrX:38727032-38726905 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 111
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 0

Conread position: 517-653
Cow position: chrX:6855965-6856101 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 517-662
Cow position: chrX:42216525-42216383 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 10, 17

Conread position: 518-656
Cow position: chrX:42220595-42220454 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 519-653
Cow position: chrX:36039132-36039267 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 522-660
Cow position: chrX:783555-783694 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 117, 0

Conread position: 524-640
Cow position: chrX:45737440-45737555 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 526-649
Cow position: chrX:16532621-16532747 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 526-649
Cow position: chrX:19162016-19161892 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 527-660
Cow position: chrX:23185222-23185089 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 527-662
Cow position: chrX:38080263-38080398 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 531-661
Cow position: chrX:18196118-18196249 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 531-662
Cow position: chrX:32590286-32590154 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 111, 0

Conread position: 532-648
Cow position: chrX:44873227-44873111 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 534-642
Cow position: chrX:15534089-15533980 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 537-658
Cow position: chrX:25285570-25285446 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 541-659
Cow position: chrX:45228600-45228719 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 549-654
Cow position: chrX:38726074-38726178 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 549-661
Cow position: chrX:3130780-3130893 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 558-651
Cow position: chrX:23732931-23733023 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 80
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 565-651
Cow position: chrX:7763845-7763931 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 75
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 566-658
Cow position: chrX:33153669-33153760 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 81
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 0

Show alignments to all cow chromosomes.