Cow genome map

Conread name: mCP1-MI-P-CP1-nwi-c-12-0-UI.s1

Conread position: 17-458
Cow position: chr12:8841846-8841398 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 159

Conread position: 25-474
Cow position: chr12:21718957-21718507 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 95

Conread position: 30-160
Cow position: chr12:8674840-8674710 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 39, 47

Conread position: 30-257
Cow position: chr12:36213503-36213729 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 58

Conread position: 30-282
Cow position: chr12:31261184-31260934 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-286
Cow position: chr12:19852483-19852733 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 96

Conread position: 30-297
Cow position: chr12:19871438-19871706 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 134

Conread position: 30-325
Cow position: chr12:21484636-21484922 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 185, 51

Conread position: 30-353
Cow position: chr12:24205760-24206075 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 30-370
Cow position: chr12:36569119-36568761 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 254
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 40, 109

Conread position: 30-372
Cow position: chr12:28571609-28571936 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 47

Conread position: 30-390
Cow position: chr12:18585898-18586254 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-390
Cow position: chr12:20459494-20459140 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 83

Conread position: 30-390
Cow position: chr12:26870031-26869670 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 89

Conread position: 30-429
Cow position: chr12:27994326-27994720 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-466
Cow position: chr12:1056282-1055851 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 47

Conread position: 30-466
Cow position: chr12:21212009-21212442 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-470
Cow position: chr12:1774697-1774245 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 37

Conread position: 30-470
Cow position: chr12:13043016-13042578 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 48

Conread position: 30-471
Cow position: chr12:30501866-30502285 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 78

Conread position: 30-474
Cow position: chr12:250095-249656 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 133

Conread position: 30-474
Cow position: chr12:1511538-1511099 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 92

Conread position: 30-474
Cow position: chr12:3180634-3181075 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 129

Conread position: 30-474
Cow position: chr12:3717048-3716610 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr12:5226459-5226897 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr12:6186921-6186485 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 58

Conread position: 30-474
Cow position: chr12:11101473-11101914 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-474
Cow position: chr12:14568589-14568158 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 82

Conread position: 30-474
Cow position: chr12:15820957-15821383 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 12

Conread position: 30-474
Cow position: chr12:21057481-21057051 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 12

Conread position: 30-474
Cow position: chr12:21075061-21075482 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 101

Conread position: 30-474
Cow position: chr12:22202456-22202015 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr12:23138103-23137662 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr12:23474978-23475414 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 77

Conread position: 30-474
Cow position: chr12:24029253-24028817 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 11

Conread position: 30-474
Cow position: chr12:24557803-24558236 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 64

Conread position: 30-474
Cow position: chr12:25148393-25147952 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 64

Conread position: 30-474
Cow position: chr12:28013006-28012565 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 129

Conread position: 30-474
Cow position: chr12:28763788-28763349 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 108

Conread position: 30-474
Cow position: chr12:32147404-32146964 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-474
Cow position: chr12:33296858-33297295 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 69

Conread position: 30-474
Cow position: chr12:34176780-34177221 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr12:39930394-39930831 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 82

Conread position: 30-474
Cow position: chr12:43681230-43681670 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr12:46111892-46111451 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 31-421
Cow position: chr12:24447646-24447251 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 80

Conread position: 31-466
Cow position: chr12:2285498-2285909 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 59

Conread position: 31-473
Cow position: chr12:22480351-22480783 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 63

Conread position: 31-474
Cow position: chr12:19155633-19155189 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 11

Conread position: 31-474
Cow position: chr12:21610829-21611262 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 141

Conread position: 31-474
Cow position: chr12:41338006-41337563 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 31-474
Cow position: chr12:48416520-48416087 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 57

Conread position: 32-334
Cow position: chr12:32656776-32657076 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 144

Conread position: 32-474
Cow position: chr12:17663189-17663613 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 36

Conread position: 33-288
Cow position: chr12:8773893-8774146 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 193
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 157, 129

Conread position: 33-474
Cow position: chr12:1093129-1093566 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 147

Conread position: 33-474
Cow position: chr12:21946225-21946647 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 73

Conread position: 33-474
Cow position: chr12:22517624-22517183 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 33-474
Cow position: chr12:22979665-22979227 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-474
Cow position: chr12:36287786-36287345 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 40

Conread position: 34-440
Cow position: chr12:31217415-31217828 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 289
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 183, 46

Conread position: 35-474
Cow position: chr12:5713194-5713628 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 34

Conread position: 39-474
Cow position: chr12:21314197-21313750 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 101

Conread position: 40-394
Cow position: chr12:10988592-10988940 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 54

Conread position: 42-473
Cow position: chr12:15939628-15939216 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 42-474
Cow position: chr12:12928673-12928244 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 129

Conread position: 42-474
Cow position: chr12:23441702-23441267 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 129

Conread position: 44-474
Cow position: chr12:10075899-10076324 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 53

Conread position: 48-255
Cow position: chr12:1345316-1345527 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 52-474
Cow position: chr12:30016823-30016412 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 119

Conread position: 84-409
Cow position: chr12:24756267-24755944 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 85-258
Cow position: chr12:10490131-10490300 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 148
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 130, 85

Conread position: 90-412
Cow position: chr12:47928369-47928696 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 238
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 15, 212

Conread position: 92-467
Cow position: chr12:35135593-35135951 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 99-386
Cow position: chr12:1058283-1057981 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 71, 211

Conread position: 102-473
Cow position: chr12:17969268-17969630 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 40

Conread position: 102-473
Cow position: chr12:29485362-29485005 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 68

Conread position: 112-474
Cow position: chr12:32917638-32917993 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 58

Conread position: 113-474
Cow position: chr12:22286625-22286269 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 62

Conread position: 118-474
Cow position: chr12:5904846-5905191 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 53

Conread position: 121-474
Cow position: chr12:14940282-14940631 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 49

Conread position: 121-474
Cow position: chr12:30011646-30011305 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 49

Conread position: 121-474
Cow position: chr12:38774409-38774742 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 55

Conread position: 125-378
Cow position: chr12:21202149-21202400 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 36

Conread position: 127-471
Cow position: chr12:5274041-5273705 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 43

Conread position: 129-474
Cow position: chr12:40867658-40867999 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 41

Conread position: 131-471
Cow position: chr12:11558816-11558478 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 244
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 90, 28

Conread position: 137-470
Cow position: chr12:19040522-19040207 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 33

Conread position: 148-466
Cow position: chr12:21723456-21723772 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 24

Conread position: 155-413
Cow position: chr12:4004558-4004300 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 54

Conread position: 155-474
Cow position: chr12:20317397-20317090 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 109

Conread position: 159-474
Cow position: chr12:37698123-37697810 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 133

Conread position: 161-474
Cow position: chr12:6529943-6530258 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 130

Conread position: 165-474
Cow position: chr12:28708267-28707959 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 119

Conread position: 166-474
Cow position: chr12:7651477-7651174 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 112

Conread position: 167-471
Cow position: chr12:1849756-1849448 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 182

Conread position: 169-474
Cow position: chr12:8674092-8673783 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 118

Conread position: 170-474
Cow position: chr12:25260391-25260086 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 121

Conread position: 175-474
Cow position: chr12:47415172-47415467 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 19

Conread position: 176-474
Cow position: chr12:8770129-8770427 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 97

Conread position: 190-474
Cow position: chr12:3545033-3545318 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 83

Conread position: 221-390
Cow position: chr12:24658297-24658138 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 39, 0

Conread position: 221-474
Cow position: chr12:18115818-18116066 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 50

Conread position: 229-474
Cow position: chr12:21579363-21579119 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 42

Conread position: 236-474
Cow position: chr12:9886579-9886341 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 39

Show alignments to all cow chromosomes.