Cow genome map

Conread name: mCP1-MI-P-CP1-nwi-c-12-0-UI.s1

Conread position: 25-467
Cow position: chr25:11955841-11956277 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 57

Conread position: 26-474
Cow position: chr25:11043632-11044071 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 16

Conread position: 27-474
Cow position: chr25:18486474-18486930 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 54

Conread position: 29-246
Cow position: chr25:18180378-18180591 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 40, 14

Conread position: 30-162
Cow position: chr25:3172384-3172252 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 107
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 47

Conread position: 30-180
Cow position: chr25:41353399-41353249 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 30-193
Cow position: chr25:28420690-28420529 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 139
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 35, 135

Conread position: 30-249
Cow position: chr25:26850200-26849984 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 191, 107

Conread position: 30-251
Cow position: chr25:20633776-20633994 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 39, 98

Conread position: 30-262
Cow position: chr25:32577647-32577416 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-303
Cow position: chr25:34503207-34502936 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 141

Conread position: 30-304
Cow position: chr25:29357997-29357724 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-338
Cow position: chr25:23366677-23366988 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 148

Conread position: 30-388
Cow position: chr25:25480583-25480251 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 43

Conread position: 30-407
Cow position: chr25:22151120-22151494 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-414
Cow position: chr25:19682310-19682684 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 52

Conread position: 30-420
Cow position: chr25:4372675-4372312 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 30-423
Cow position: chr25:37648445-37648820 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 72

Conread position: 30-449
Cow position: chr25:33688195-33687778 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 80

Conread position: 30-452
Cow position: chr25:9395425-9395846 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 140

Conread position: 30-465
Cow position: chr25:26353769-26353341 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 133

Conread position: 30-466
Cow position: chr25:34343892-34343462 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 141

Conread position: 30-466
Cow position: chr25:35755228-35754799 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 104

Conread position: 30-467
Cow position: chr25:18269488-18269906 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 49

Conread position: 30-467
Cow position: chr25:41098176-41097748 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 64

Conread position: 30-470
Cow position: chr25:37593420-37593855 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 77

Conread position: 30-471
Cow position: chr25:25826463-25826906 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 93

Conread position: 30-471
Cow position: chr25:40322275-40321837 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 146

Conread position: 30-474
Cow position: chr25:4522796-4522363 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 142

Conread position: 30-474
Cow position: chr25:8655305-8655745 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 143

Conread position: 30-474
Cow position: chr25:11665689-11666118 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 34

Conread position: 30-474
Cow position: chr25:12756409-12755982 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 12

Conread position: 30-474
Cow position: chr25:13960082-13960515 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 117

Conread position: 30-474
Cow position: chr25:16922774-16922340 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 56

Conread position: 30-474
Cow position: chr25:17657635-17658068 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 140

Conread position: 30-474
Cow position: chr25:17993126-17992691 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 52

Conread position: 30-474
Cow position: chr25:18474222-18474647 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 12

Conread position: 30-474
Cow position: chr25:18886466-18886028 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr25:19337310-19336871 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr25:19923542-19923975 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 30-474
Cow position: chr25:20772319-20771881 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr25:23393888-23394318 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 82

Conread position: 30-474
Cow position: chr25:24655154-24654719 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 25

Conread position: 30-474
Cow position: chr25:26282040-26282480 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 83

Conread position: 30-474
Cow position: chr25:26914247-26914692 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 109

Conread position: 30-474
Cow position: chr25:26922856-26923299 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 37

Conread position: 30-474
Cow position: chr25:27231374-27231803 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr25:28862887-28863325 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr25:32610405-32609964 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr25:33838398-33838829 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 135

Conread position: 30-474
Cow position: chr25:34164546-34164106 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 85

Conread position: 30-474
Cow position: chr25:34673571-34673126 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-474
Cow position: chr25:35567868-35567434 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 8

Conread position: 30-474
Cow position: chr25:39386814-39386379 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 141

Conread position: 30-474
Cow position: chr25:41135730-41135302 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 77

Conread position: 31-297
Cow position: chr25:17562061-17562319 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 201
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 185, 11

Conread position: 31-365
Cow position: chr25:33574717-33574380 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 40, 72

Conread position: 31-386
Cow position: chr25:12939191-12938839 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 31-474
Cow position: chr25:12082330-12081901 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 25

Conread position: 31-474
Cow position: chr25:13430096-13429671 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 31-474
Cow position: chr25:17554243-17553814 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 129

Conread position: 31-474
Cow position: chr25:20495572-20495986 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 36

Conread position: 31-474
Cow position: chr25:26781070-26780630 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 32-470
Cow position: chr25:29313301-29312870 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 10

Conread position: 33-474
Cow position: chr25:18190358-18189923 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 127

Conread position: 34-470
Cow position: chr25:41121023-41121454 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 137

Conread position: 35-469
Cow position: chr25:26896072-26896496 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 87

Conread position: 36-160
Cow position: chr25:26518308-26518432 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 50

Conread position: 40-404
Cow position: chr25:22576783-22576437 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 30, 87

Conread position: 40-470
Cow position: chr25:24637115-24636692 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 122

Conread position: 41-443
Cow position: chr25:28275642-28275246 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 130

Conread position: 42-283
Cow position: chr25:23361514-23361752 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 10, 16

Conread position: 42-456
Cow position: chr25:18072251-18072657 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 67

Conread position: 42-466
Cow position: chr25:34013726-34013311 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 35

Conread position: 43-474
Cow position: chr25:36350766-36351194 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 128

Conread position: 44-474
Cow position: chr25:10136850-10137280 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 14

Conread position: 69-474
Cow position: chr25:3688190-3688591 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 101

Conread position: 73-474
Cow position: chr25:17211075-17210679 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 97

Conread position: 76-474
Cow position: chr25:25509951-25510345 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 84

Conread position: 81-459
Cow position: chr25:36512352-36512715 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 86-474
Cow position: chr25:4858427-4858042 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 84

Conread position: 88-310
Cow position: chr25:24459640-24459429 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 128, 20

Conread position: 91-457
Cow position: chr25:2516079-2516440 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 75

Conread position: 96-474
Cow position: chr25:21120391-21120769 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 74

Conread position: 98-474
Cow position: chr25:21950215-21950583 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 40

Conread position: 109-474
Cow position: chr25:34122001-34121638 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 61

Conread position: 110-470
Cow position: chr25:34767787-34768131 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 43

Conread position: 111-441
Cow position: chr25:16401795-16401468 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 60

Conread position: 127-279
Cow position: chr25:25755668-25755515 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 89, 47

Conread position: 136-474
Cow position: chr25:35613214-35612882 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 46

Conread position: 141-388
Cow position: chr25:20006276-20006527 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 12, 35

Conread position: 145-474
Cow position: chr25:2047440-2047105 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 30

Conread position: 145-474
Cow position: chr25:36127775-36127452 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 25

Conread position: 165-474
Cow position: chr25:9595462-9595769 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 126

Conread position: 166-411
Cow position: chr25:26681722-26681971 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 179

Conread position: 166-474
Cow position: chr25:20790790-20790466 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 236
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 55, 175

Conread position: 166-474
Cow position: chr25:21025101-21024781 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 185

Conread position: 169-373
Cow position: chr25:24776507-24776707 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 49, 12

Conread position: 174-388
Cow position: chr25:13961708-13961923 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 43, 117

Conread position: 176-474
Cow position: chr25:11896337-11896039 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 115

Conread position: 176-474
Cow position: chr25:18324200-18323903 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 115

Conread position: 176-474
Cow position: chr25:29216972-29216677 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 44, 111

Conread position: 191-470
Cow position: chr25:18129372-18129645 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 30, 100

Conread position: 199-474
Cow position: chr25:37446787-37447057 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 79

Conread position: 215-474
Cow position: chr25:12318625-12318368 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 220-458
Cow position: chr25:33979205-33978979 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 222-474
Cow position: chr25:22711494-22711739 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Show alignments to all cow chromosomes.