Cow genome map

Conread name: mCP1-MI-P-CP1-nwi-c-12-0-UI.s1

Conread position: 25-462
Cow position: chr26:12585272-12584838 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 146

Conread position: 26-390
Cow position: chr26:1885280-1885645 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 106

Conread position: 26-474
Cow position: chr26:9063354-9063808 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 16

Conread position: 30-272
Cow position: chr26:2670546-2670308 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 39, 75

Conread position: 30-272
Cow position: chr26:20186593-20186812 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 54

Conread position: 30-335
Cow position: chr26:9841129-9840817 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 30, 55

Conread position: 30-392
Cow position: chr26:2201801-2202158 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 78

Conread position: 30-398
Cow position: chr26:35191277-35190912 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-420
Cow position: chr26:3833305-3833692 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-422
Cow position: chr26:18877078-18877465 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 8

Conread position: 30-457
Cow position: chr26:9694525-9694103 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 133

Conread position: 30-466
Cow position: chr26:10699227-10698810 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 46

Conread position: 30-470
Cow position: chr26:13773322-13773751 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 130

Conread position: 30-471
Cow position: chr26:12662461-12662041 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 15

Conread position: 30-473
Cow position: chr26:386951-387389 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-473
Cow position: chr26:1620926-1621358 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 85

Conread position: 30-473
Cow position: chr26:3862807-3862368 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 110

Conread position: 30-474
Cow position: chr26:3027168-3026728 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 104

Conread position: 30-474
Cow position: chr26:3187030-3187462 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 37

Conread position: 30-474
Cow position: chr26:3564768-3564330 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:7459693-7459255 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 90

Conread position: 30-474
Cow position: chr26:7559345-7558906 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:8084097-8084538 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:8308493-8308042 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 101

Conread position: 30-474
Cow position: chr26:8739146-8738705 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:8873117-8873557 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 115

Conread position: 30-474
Cow position: chr26:9100709-9100280 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 63

Conread position: 30-474
Cow position: chr26:11369966-11370399 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 130

Conread position: 30-474
Cow position: chr26:13183581-13184022 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 141

Conread position: 30-474
Cow position: chr26:14487986-14487553 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 82

Conread position: 30-474
Cow position: chr26:17169101-17169534 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:18857391-18857826 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 119

Conread position: 30-474
Cow position: chr26:22691661-22692097 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-474
Cow position: chr26:22831765-22831327 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 30-474
Cow position: chr26:23590966-23591407 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 141

Conread position: 30-474
Cow position: chr26:23889683-23890115 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:26286130-26286571 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 142

Conread position: 30-474
Cow position: chr26:27987318-27986894 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 115

Conread position: 30-474
Cow position: chr26:28706787-28706351 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 82

Conread position: 30-474
Cow position: chr26:29433503-29433944 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:30594358-30593928 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr26:30725647-30725197 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 131

Conread position: 30-474
Cow position: chr26:35423770-35424209 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 72

Conread position: 31-213
Cow position: chr26:4548880-4549060 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 46, 106

Conread position: 31-390
Cow position: chr26:34015115-34015466 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 35

Conread position: 31-474
Cow position: chr26:4324442-4324007 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 146

Conread position: 32-473
Cow position: chr26:21858870-21859293 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 10

Conread position: 33-396
Cow position: chr26:11269496-11269846 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 59

Conread position: 33-428
Cow position: chr26:25340662-25340270 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 46

Conread position: 33-462
Cow position: chr26:15199302-15199709 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 59

Conread position: 33-474
Cow position: chr26:20218527-20218953 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 60

Conread position: 33-474
Cow position: chr26:30786201-30786638 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 49

Conread position: 35-474
Cow position: chr26:15145770-15146206 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 136

Conread position: 35-474
Cow position: chr26:20255900-20256330 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 141

Conread position: 37-334
Cow position: chr26:10490522-10490812 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 179, 88

Conread position: 41-299
Cow position: chr26:6082842-6082588 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 89

Conread position: 43-470
Cow position: chr26:30586071-30585652 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 58

Conread position: 44-390
Cow position: chr26:9835756-9836099 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 127

Conread position: 44-474
Cow position: chr26:7677019-7677446 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 127

Conread position: 50-472
Cow position: chr26:11362390-11361990 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 63

Conread position: 61-474
Cow position: chr26:8810159-8810567 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 14

Conread position: 67-367
Cow position: chr26:614882-614590 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 189
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 16, 26

Conread position: 68-474
Cow position: chr26:3097339-3096937 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 102

Conread position: 68-474
Cow position: chr26:11537135-11537537 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 102

Conread position: 82-474
Cow position: chr26:15558810-15559198 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 90-474
Cow position: chr26:6836951-6837317 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 87

Conread position: 91-397
Cow position: chr26:16905249-16905556 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 127, 80

Conread position: 92-443
Cow position: chr26:19536398-19536730 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 256
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 124, 24

Conread position: 93-420
Cow position: chr26:16719809-16720135 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 77

Conread position: 97-456
Cow position: chr26:13976766-13976427 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 21

Conread position: 98-474
Cow position: chr26:21538733-21539105 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 72

Conread position: 104-473
Cow position: chr26:3756550-3756929 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 66

Conread position: 105-470
Cow position: chr26:30653026-30652671 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 110, 65

Conread position: 109-470
Cow position: chr26:14897439-14897796 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 61

Conread position: 110-390
Cow position: chr26:8653772-8653502 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 46

Conread position: 129-474
Cow position: chr26:23600658-23600323 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 46

Conread position: 131-467
Cow position: chr26:756001-755671 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 44

Conread position: 132-473
Cow position: chr26:799170-798835 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 46

Conread position: 138-474
Cow position: chr26:13556830-13556504 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 143-474
Cow position: chr26:14292009-14292348 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 205

Conread position: 146-471
Cow position: chr26:9867956-9867657 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 240
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 70, 26

Conread position: 149-474
Cow position: chr26:33253099-33252775 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 41

Conread position: 163-443
Cow position: chr26:11335464-11335764 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 145

Conread position: 170-474
Cow position: chr26:18918914-18918607 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 105

Conread position: 195-474
Cow position: chr26:30569699-30569418 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 83

Conread position: 205-474
Cow position: chr26:32671304-32671028 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 148

Conread position: 216-435
Cow position: chr26:2988526-2988319 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 0

Conread position: 216-474
Cow position: chr26:19347972-19347714 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 43

Conread position: 221-389
Cow position: chr26:21247233-21247399 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.