Cow genome map

Conread name: mCP1-MI-P-CP1-nwi-c-12-0-UI.s1

Conread position: 20-474
Cow position: chr27:9089860-9090296 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 71

Conread position: 25-474
Cow position: chr27:15872100-15871665 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 72

Conread position: 27-474
Cow position: chr27:26785041-26785478 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 56

Conread position: 30-156
Cow position: chr27:24054934-24055059 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 122, 12

Conread position: 30-231
Cow position: chr27:15697574-15697769 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 64, 37

Conread position: 30-271
Cow position: chr27:16788072-16787832 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-305
Cow position: chr27:14380530-14380803 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 146

Conread position: 30-319
Cow position: chr27:4389229-4389507 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 87

Conread position: 30-321
Cow position: chr27:1536396-1536685 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 12

Conread position: 30-333
Cow position: chr27:15870784-15870479 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 228
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 41, 73

Conread position: 30-353
Cow position: chr27:20764974-20765283 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 28, 50

Conread position: 30-380
Cow position: chr27:3990574-3990228 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-388
Cow position: chr27:12239294-12239648 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-411
Cow position: chr27:15634116-15633743 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 98

Conread position: 30-411
Cow position: chr27:27930434-27930805 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 37

Conread position: 30-418
Cow position: chr27:15405851-15406230 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 82

Conread position: 30-418
Cow position: chr27:21392237-21392636 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 281
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 40, 109

Conread position: 30-421
Cow position: chr27:27557028-27557411 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 87

Conread position: 30-443
Cow position: chr27:4982598-4982996 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-453
Cow position: chr27:14669416-14669848 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 55

Conread position: 30-466
Cow position: chr27:8959790-8959358 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-467
Cow position: chr27:30036095-30036538 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 143

Conread position: 30-470
Cow position: chr27:10306344-10306765 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 143

Conread position: 30-470
Cow position: chr27:13901350-13901786 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-470
Cow position: chr27:27729261-27728831 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 97

Conread position: 30-471
Cow position: chr27:4818641-4819068 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 303
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 61

Conread position: 30-471
Cow position: chr27:5914159-5914601 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 103

Conread position: 30-473
Cow position: chr27:3653474-3653034 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr27:165693-165254 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-474
Cow position: chr27:1188894-1189309 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 78

Conread position: 30-474
Cow position: chr27:1501740-1502160 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 144

Conread position: 30-474
Cow position: chr27:4331514-4331072 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 118

Conread position: 30-474
Cow position: chr27:5925499-5925943 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 25

Conread position: 30-474
Cow position: chr27:8201164-8201603 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 11

Conread position: 30-474
Cow position: chr27:9332903-9333334 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 76

Conread position: 30-474
Cow position: chr27:10383667-10384097 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 62

Conread position: 30-474
Cow position: chr27:11434401-11434829 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 113

Conread position: 30-474
Cow position: chr27:15033665-15033225 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr27:19424151-19423709 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr27:19523482-19523043 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 25

Conread position: 30-474
Cow position: chr27:20810647-20811083 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 25

Conread position: 30-474
Cow position: chr27:21350074-21350512 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 132

Conread position: 30-474
Cow position: chr27:24296043-24295593 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 150

Conread position: 30-474
Cow position: chr27:25784528-25784097 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 63

Conread position: 30-474
Cow position: chr27:26330158-26330594 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 31-388
Cow position: chr27:13316786-13317136 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 140

Conread position: 31-398
Cow position: chr27:2681747-2682113 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 31-451
Cow position: chr27:15867066-15866657 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 11

Conread position: 31-470
Cow position: chr27:21451671-21452107 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 11

Conread position: 31-472
Cow position: chr27:8427085-8427523 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 31-472
Cow position: chr27:13183049-13182622 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 49

Conread position: 31-474
Cow position: chr27:11481158-11481598 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 33-474
Cow position: chr27:13353535-13353972 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 127

Conread position: 34-307
Cow position: chr27:29467160-29467429 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 196
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 97

Conread position: 37-474
Cow position: chr27:15099875-15100306 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 134

Conread position: 42-255
Cow position: chr27:24205896-24205684 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 166
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 28, 55

Conread position: 42-466
Cow position: chr27:16332240-16331830 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 59

Conread position: 42-474
Cow position: chr27:11256445-11256020 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 25

Conread position: 60-437
Cow position: chr27:27054239-27053860 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 115

Conread position: 64-439
Cow position: chr27:18954304-18954674 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 95

Conread position: 75-470
Cow position: chr27:11489894-11490283 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 17

Conread position: 80-474
Cow position: chr27:28984044-28984433 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 81-445
Cow position: chr27:4805066-4805417 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 91

Conread position: 86-467
Cow position: chr27:20865627-20866019 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 265
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 58, 266

Conread position: 92-349
Cow position: chr27:816473-816221 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 19

Conread position: 96-474
Cow position: chr27:21283958-21283585 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 87

Conread position: 99-474
Cow position: chr27:13409288-13409663 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 79

Conread position: 103-474
Cow position: chr27:26856338-26856707 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 33

Conread position: 105-474
Cow position: chr27:8262140-8262506 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 64

Conread position: 109-474
Cow position: chr27:10324620-10324268 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 60

Conread position: 118-466
Cow position: chr27:6018874-6019213 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 57

Conread position: 118-474
Cow position: chr27:28907916-28907568 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 54

Conread position: 143-470
Cow position: chr27:13272907-13273215 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 29

Conread position: 166-474
Cow position: chr27:23454338-23454639 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 24

Conread position: 169-389
Cow position: chr27:13844352-13844131 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 47, 109

Conread position: 174-474
Cow position: chr27:9989513-9989214 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 117

Conread position: 174-474
Cow position: chr27:16045095-16045397 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 99

Conread position: 174-474
Cow position: chr27:20001450-20001149 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 93

Conread position: 177-473
Cow position: chr27:3235097-3235397 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 153

Conread position: 179-473
Cow position: chr27:16337825-16337541 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 183-474
Cow position: chr27:26849325-26849037 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 94

Conread position: 190-474
Cow position: chr27:19487603-19487317 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 153

Conread position: 192-390
Cow position: chr27:11414164-11413973 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 24, 86

Conread position: 192-463
Cow position: chr27:30177130-30176857 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 87

Conread position: 198-474
Cow position: chr27:16823578-16823309 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 24

Conread position: 206-474
Cow position: chr27:22400553-22400282 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 140

Conread position: 221-474
Cow position: chr27:12190690-12190941 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 221-474
Cow position: chr27:26545175-26545422 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 222-398
Cow position: chr27:7084851-7084677 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 146
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 66, 0

Conread position: 224-474
Cow position: chr27:1293666-1293914 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 224-474
Cow position: chr27:8429671-8429918 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 66

Conread position: 227-474
Cow position: chr27:5853169-5853413 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 228-370
Cow position: chr27:670845-670700 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 47

Show alignments to all cow chromosomes.