Cow genome map

Conread name: mCP1-MI-P-CP1-nwi-c-12-0-UI.s1

Conread position: 2-474
Cow position: chr3:72390048-72390516 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 24

Conread position: 10-430
Cow position: chr3:14613169-14613581 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 141

Conread position: 11-470
Cow position: chr3:22220278-22220733 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 12-474
Cow position: chr3:52257376-52256922 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 17-474
Cow position: chr3:15656167-15655719 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 72

Conread position: 17-474
Cow position: chr3:17864573-17865026 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 143

Conread position: 25-437
Cow position: chr3:6854475-6854042 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 165

Conread position: 25-473
Cow position: chr3:83767397-83767841 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 146

Conread position: 25-474
Cow position: chr3:16226027-16226472 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 78

Conread position: 26-474
Cow position: chr3:3885046-3884598 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 251

Conread position: 26-474
Cow position: chr3:6785470-6785911 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 150

Conread position: 26-474
Cow position: chr3:31418689-31419124 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 16

Conread position: 27-286
Cow position: chr3:15082787-15082536 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 183
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 67

Conread position: 27-305
Cow position: chr3:8605756-8605483 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 43, 146

Conread position: 27-425
Cow position: chr3:55374235-55374628 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 55

Conread position: 30-156
Cow position: chr3:7772860-7772734 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 30-160
Cow position: chr3:22339065-22339194 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 39, 73

Conread position: 30-193
Cow position: chr3:44101209-44101371 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 126
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 40, 146

Conread position: 30-258
Cow position: chr3:33269388-33269607 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 167
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 30-258
Cow position: chr3:49429597-49429386 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 195, 34

Conread position: 30-259
Cow position: chr3:48240409-48240636 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 30, 55

Conread position: 30-280
Cow position: chr3:29582266-29582515 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 77, 40

Conread position: 30-306
Cow position: chr3:70322516-70322244 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 124, 37

Conread position: 30-335
Cow position: chr3:73637037-73637339 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 86

Conread position: 30-339
Cow position: chr3:19794935-19794633 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-339
Cow position: chr3:46858127-46857820 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-345
Cow position: chr3:64875930-64876242 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 61

Conread position: 30-348
Cow position: chr3:61173652-61173962 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 13

Conread position: 30-363
Cow position: chr3:39327704-39328026 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 12

Conread position: 30-388
Cow position: chr3:46006260-46006600 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 256
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 185, 94

Conread position: 30-388
Cow position: chr3:56102896-56103248 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 64

Conread position: 30-389
Cow position: chr3:18886616-18886970 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 12

Conread position: 30-390
Cow position: chr3:7476763-7476408 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 49

Conread position: 30-390
Cow position: chr3:7856579-7856935 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 14

Conread position: 30-390
Cow position: chr3:20999915-20999558 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-390
Cow position: chr3:31050848-31050511 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 252
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 40, 72

Conread position: 30-390
Cow position: chr3:40826553-40826910 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-390
Cow position: chr3:81101235-81101592 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-396
Cow position: chr3:17460379-17460736 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 26

Conread position: 30-399
Cow position: chr3:29130251-29130612 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 115

Conread position: 30-401
Cow position: chr3:49999293-49999660 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 77

Conread position: 30-406
Cow position: chr3:35619714-35620091 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 25

Conread position: 30-406
Cow position: chr3:77225890-77226246 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 101

Conread position: 30-418
Cow position: chr3:14724276-14724647 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 110

Conread position: 30-437
Cow position: chr3:12676485-12676078 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 152

Conread position: 30-437
Cow position: chr3:18814663-18815066 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 73

Conread position: 30-442
Cow position: chr3:40004329-40003944 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 54

Conread position: 30-443
Cow position: chr3:33254703-33254297 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 30-443
Cow position: chr3:40336989-40336579 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 30-444
Cow position: chr3:16293752-16293348 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 12

Conread position: 30-458
Cow position: chr3:12750056-12750478 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 93

Conread position: 30-466
Cow position: chr3:23010508-23010941 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 145

Conread position: 30-466
Cow position: chr3:40049046-40049478 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 71

Conread position: 30-467
Cow position: chr3:5887043-5887474 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 132

Conread position: 30-467
Cow position: chr3:12667860-12668286 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 71

Conread position: 30-467
Cow position: chr3:13311847-13311407 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-467
Cow position: chr3:60932426-60932855 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 12

Conread position: 30-467
Cow position: chr3:79595790-79596206 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 130

Conread position: 30-470
Cow position: chr3:53518960-53519376 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-470
Cow position: chr3:56148449-56148886 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 144

Conread position: 30-470
Cow position: chr3:58950618-58951051 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 131

Conread position: 30-470
Cow position: chr3:64653825-64654260 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-470
Cow position: chr3:68889415-68888979 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 110

Conread position: 30-471
Cow position: chr3:6896984-6897419 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 61

Conread position: 30-471
Cow position: chr3:30321413-30321839 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-471
Cow position: chr3:48603409-48603855 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 249

Conread position: 30-472
Cow position: chr3:25753411-25753858 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 61

Conread position: 30-472
Cow position: chr3:47986596-47987035 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-473
Cow position: chr3:11784520-11784947 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 137

Conread position: 30-473
Cow position: chr3:18575458-18575027 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 25

Conread position: 30-473
Cow position: chr3:64376554-64376122 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-473
Cow position: chr3:65085091-65085530 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 113

Conread position: 30-473
Cow position: chr3:72633230-72633669 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-473
Cow position: chr3:78520204-78520645 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 54

Conread position: 30-474
Cow position: chr3:226729-226295 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 44

Conread position: 30-474
Cow position: chr3:302388-302819 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 21

Conread position: 30-474
Cow position: chr3:2074939-2075378 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 31

Conread position: 30-474
Cow position: chr3:2117603-2118050 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:2852080-2851640 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 34

Conread position: 30-474
Cow position: chr3:3300799-3301222 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 87

Conread position: 30-474
Cow position: chr3:6838186-6838630 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-474
Cow position: chr3:7155650-7155209 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:7677649-7678091 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 25

Conread position: 30-474
Cow position: chr3:13276125-13275680 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 145

Conread position: 30-474
Cow position: chr3:14279843-14280273 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 93

Conread position: 30-474
Cow position: chr3:14438829-14438391 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 39

Conread position: 30-474
Cow position: chr3:15663287-15662869 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 56

Conread position: 30-474
Cow position: chr3:19753578-19753138 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:19942049-19942480 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 30-474
Cow position: chr3:20379560-20379122 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 44

Conread position: 30-474
Cow position: chr3:20475671-20476096 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 30

Conread position: 30-474
Cow position: chr3:21179102-21178659 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 142

Conread position: 30-474
Cow position: chr3:21593441-21593879 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 73

Conread position: 30-474
Cow position: chr3:23217169-23216736 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 101

Conread position: 30-474
Cow position: chr3:23287180-23286754 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 129

Conread position: 30-474
Cow position: chr3:24265355-24265795 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 30-474
Cow position: chr3:24586074-24585630 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 143

Conread position: 30-474
Cow position: chr3:26722655-26722222 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 30-474
Cow position: chr3:26742716-26742279 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-474
Cow position: chr3:26993283-26993719 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 62

Conread position: 30-474
Cow position: chr3:27866820-27867250 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 54

Conread position: 30-474
Cow position: chr3:28435542-28435110 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:29311307-29311743 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 98

Conread position: 30-474
Cow position: chr3:31021839-31022272 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 73

Conread position: 30-474
Cow position: chr3:31422970-31422528 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 135

Conread position: 30-474
Cow position: chr3:33633862-33633447 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 43

Conread position: 30-474
Cow position: chr3:34557213-34556792 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 62

Conread position: 30-474
Cow position: chr3:35884964-35884524 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 141

Conread position: 30-474
Cow position: chr3:35918721-35919157 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 39

Conread position: 30-474
Cow position: chr3:36874904-36874464 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:37599893-37600329 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 12

Conread position: 30-474
Cow position: chr3:37972191-37972624 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 97

Conread position: 30-474
Cow position: chr3:38096056-38096498 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 131

Conread position: 30-474
Cow position: chr3:38869724-38870163 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 30-474
Cow position: chr3:39921788-39921350 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 51

Conread position: 30-474
Cow position: chr3:40520783-40520342 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 129

Conread position: 30-474
Cow position: chr3:41207409-41206968 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:42186626-42187066 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:42508052-42507616 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 82

Conread position: 30-474
Cow position: chr3:42846501-42846941 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:43190113-43189668 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:43525582-43525142 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 104

Conread position: 30-474
Cow position: chr3:44536831-44536378 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 51

Conread position: 30-474
Cow position: chr3:45184828-45184404 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 37

Conread position: 30-474
Cow position: chr3:46505925-46506366 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 30-474
Cow position: chr3:46753003-46753438 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 51

Conread position: 30-474
Cow position: chr3:49336352-49336783 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 84

Conread position: 30-474
Cow position: chr3:49416690-49416253 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:50204722-50205170 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 73

Conread position: 30-474
Cow position: chr3:50346972-50347393 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 297
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 187, 62

Conread position: 30-474
Cow position: chr3:51235335-51234907 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 63

Conread position: 30-474
Cow position: chr3:53880110-53879668 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:54654018-54653562 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:56160664-56160229 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 72

Conread position: 30-474
Cow position: chr3:56297541-56297982 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 52

Conread position: 30-474
Cow position: chr3:56697005-56697435 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 54

Conread position: 30-474
Cow position: chr3:58766300-58766725 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 141

Conread position: 30-474
Cow position: chr3:59602958-59603398 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:59864639-59865077 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 11

Conread position: 30-474
Cow position: chr3:61677692-61678131 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 146

Conread position: 30-474
Cow position: chr3:64655367-64655802 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 78

Conread position: 30-474
Cow position: chr3:69930677-69930239 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 12

Conread position: 30-474
Cow position: chr3:73451157-73450715 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:75038685-75038244 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 141

Conread position: 30-474
Cow position: chr3:75771978-75771537 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 146

Conread position: 30-474
Cow position: chr3:78024279-78023850 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 130

Conread position: 31-443
Cow position: chr3:2365744-2365350 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 96

Conread position: 31-466
Cow position: chr3:173662-174087 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 48

Conread position: 31-467
Cow position: chr3:66977823-66978255 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 29

Conread position: 31-473
Cow position: chr3:60185015-60184574 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 129

Conread position: 31-474
Cow position: chr3:3031394-3031828 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 54

Conread position: 31-474
Cow position: chr3:30615783-30615346 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 31-474
Cow position: chr3:50461479-50461901 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 60

Conread position: 31-474
Cow position: chr3:57456116-57456546 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 53

Conread position: 32-264
Cow position: chr3:13117896-13117673 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 182
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 189, 49

Conread position: 32-474
Cow position: chr3:64171405-64171825 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 62

Conread position: 33-310
Cow position: chr3:14028145-14028420 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-393
Cow position: chr3:72669400-72669044 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 138

Conread position: 33-412
Cow position: chr3:10371534-10371901 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 139

Conread position: 33-421
Cow position: chr3:72175146-72174761 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-474
Cow position: chr3:2834379-2833941 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-474
Cow position: chr3:14922812-14923249 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-474
Cow position: chr3:59118619-59118181 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-474
Cow position: chr3:65473589-65474025 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 33-474
Cow position: chr3:76136478-76136919 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 143

Conread position: 35-279
Cow position: chr3:34464529-34464770 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 192
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 36, 138

Conread position: 36-474
Cow position: chr3:2904285-2903868 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 72

Conread position: 36-474
Cow position: chr3:63219097-63219522 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 140

Conread position: 37-390
Cow position: chr3:3653123-3652793 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 47

Conread position: 37-420
Cow position: chr3:73416161-73416542 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 124

Conread position: 37-470
Cow position: chr3:60177935-60177519 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 69

Conread position: 40-474
Cow position: chr3:4039764-4039338 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 62

Conread position: 42-384
Cow position: chr3:77426856-77427175 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 41

Conread position: 44-297
Cow position: chr3:26596201-26596448 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 188
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 46

Conread position: 44-474
Cow position: chr3:35056148-35056559 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 95

Conread position: 46-335
Cow position: chr3:68043332-68043045 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 93

Conread position: 50-474
Cow position: chr3:73763454-73763039 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 43

Conread position: 53-335
Cow position: chr3:36594878-36595158 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 119

Conread position: 55-474
Cow position: chr3:25056869-25057261 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 60-474
Cow position: chr3:61538792-61539197 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 71

Conread position: 68-258
Cow position: chr3:13291301-13291488 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 149, 105

Conread position: 68-474
Cow position: chr3:19958790-19959192 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 102

Conread position: 69-474
Cow position: chr3:64293722-64294107 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 84

Conread position: 69-474
Cow position: chr3:67745584-67745181 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 23

Conread position: 72-474
Cow position: chr3:16156723-16157114 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 98

Conread position: 74-466
Cow position: chr3:29281961-29282343 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 96

Conread position: 77-474
Cow position: chr3:21082077-21082458 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 47

Conread position: 77-474
Cow position: chr3:32220916-32221306 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 93

Conread position: 77-474
Cow position: chr3:75479067-75479451 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 61

Conread position: 81-353
Cow position: chr3:53387903-53387637 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 43

Conread position: 81-474
Cow position: chr3:14452867-14453250 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 69

Conread position: 81-474
Cow position: chr3:48528234-48528622 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 26

Conread position: 81-474
Cow position: chr3:51256146-51256536 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 89

Conread position: 85-474
Cow position: chr3:5445613-5445230 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 56

Conread position: 87-474
Cow position: chr3:22918737-22919118 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 83

Conread position: 87-474
Cow position: chr3:65178586-65178969 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 83

Conread position: 87-474
Cow position: chr3:81375041-81374654 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 92

Conread position: 92-406
Cow position: chr3:35030558-35030245 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 103, 78

Conread position: 92-420
Cow position: chr3:578139-578470 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 32, 51

Conread position: 92-466
Cow position: chr3:45311998-45312388 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 79

Conread position: 92-474
Cow position: chr3:18184134-18184504 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 75

Conread position: 92-474
Cow position: chr3:30329449-30329072 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 78

Conread position: 94-474
Cow position: chr3:80564017-80564396 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 96-474
Cow position: chr3:19797879-19797506 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 21

Conread position: 101-474
Cow position: chr3:52651726-52651357 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 74

Conread position: 102-381
Cow position: chr3:60891491-60891768 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 12

Conread position: 102-390
Cow position: chr3:1831627-1831360 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 113, 72

Conread position: 102-402
Cow position: chr3:67545409-67545129 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 73

Conread position: 102-467
Cow position: chr3:16332650-16333011 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 79

Conread position: 103-464
Cow position: chr3:63176579-63176929 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 15

Conread position: 103-466
Cow position: chr3:46349456-46349801 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 267
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 112, 56

Conread position: 107-464
Cow position: chr3:9639778-9639442 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 29

Conread position: 107-470
Cow position: chr3:16005575-16005206 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 180

Conread position: 108-472
Cow position: chr3:11018688-11019039 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 45

Conread position: 111-470
Cow position: chr3:45947286-45946932 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 59

Conread position: 111-474
Cow position: chr3:21100042-21100401 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 112-474
Cow position: chr3:66623425-66623783 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 59

Conread position: 113-474
Cow position: chr3:37020975-37020626 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 57

Conread position: 120-473
Cow position: chr3:63276275-63275933 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 50

Conread position: 121-473
Cow position: chr3:77366458-77366115 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 50

Conread position: 121-474
Cow position: chr3:49133151-49132823 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 244
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 36

Conread position: 124-466
Cow position: chr3:54608756-54608423 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 29

Conread position: 125-474
Cow position: chr3:9665700-9665355 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 45

Conread position: 126-474
Cow position: chr3:61278004-61278344 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 47

Conread position: 130-387
Cow position: chr3:11334604-11334353 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 39

Conread position: 130-387
Cow position: chr3:11446694-11446953 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 39

Conread position: 131-385
Cow position: chr3:73765390-73765140 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 192
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 85, 44

Conread position: 131-473
Cow position: chr3:3372926-3372590 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 39

Conread position: 132-474
Cow position: chr3:44255339-44255004 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 245
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 68, 38

Conread position: 139-470
Cow position: chr3:36571168-36570839 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 33

Conread position: 142-337
Cow position: chr3:13115210-13115015 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 37, 135

Conread position: 143-474
Cow position: chr3:45699936-45700265 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 32

Conread position: 145-474
Cow position: chr3:39065191-39065508 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 25

Conread position: 157-391
Cow position: chr3:34027483-34027249 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 176
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 60, 134

Conread position: 163-443
Cow position: chr3:49121264-49120985 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 113

Conread position: 163-474
Cow position: chr3:18246297-18245986 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 113

Conread position: 166-472
Cow position: chr3:15379920-15379615 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 88

Conread position: 166-474
Cow position: chr3:43529113-43528804 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 125

Conread position: 167-470
Cow position: chr3:28675104-28675413 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 126

Conread position: 174-474
Cow position: chr3:5989267-5988965 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 102

Conread position: 174-474
Cow position: chr3:30567410-30567711 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 117

Conread position: 176-474
Cow position: chr3:13085242-13084944 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 101

Conread position: 176-474
Cow position: chr3:37009444-37009148 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 101

Conread position: 176-474
Cow position: chr3:61242681-61242976 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 100

Conread position: 177-467
Cow position: chr3:4991604-4991319 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 83

Conread position: 177-474
Cow position: chr3:64215870-64216168 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 114

Conread position: 181-420
Cow position: chr3:54959036-54959276 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 110

Conread position: 182-474
Cow position: chr3:45215484-45215205 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 217
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 34, 134

Conread position: 190-430
Cow position: chr3:78665017-78664782 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 181
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 20, 32

Conread position: 190-474
Cow position: chr3:1034401-1034685 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 77

Conread position: 190-474
Cow position: chr3:38346350-38346634 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 86

Conread position: 190-474
Cow position: chr3:77187598-77187879 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 39

Conread position: 192-474
Cow position: chr3:58034351-58034071 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 194-390
Cow position: chr3:55187736-55187935 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 23, 97

Conread position: 197-474
Cow position: chr3:56302486-56302211 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 90

Conread position: 198-390
Cow position: chr3:6874756-6874558 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 145

Conread position: 198-474
Cow position: chr3:31120509-31120230 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 147

Conread position: 202-407
Cow position: chr3:21005182-21005388 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 164
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 13, 74

Conread position: 215-474
Cow position: chr3:23735932-23735673 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 74

Conread position: 215-474
Cow position: chr3:78200938-78200678 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 75

Conread position: 216-390
Cow position: chr3:78261807-78261635 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 72, 0

Conread position: 216-474
Cow position: chr3:73211172-73211426 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 221-474
Cow position: chr3:40285002-40284751 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 221-474
Cow position: chr3:53934657-53934892 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 193
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 67, 0

Conread position: 222-474
Cow position: chr3:49649565-49649811 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 49

Conread position: 222-474
Cow position: chr3:74233424-74233666 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 224-474
Cow position: chr3:70893924-70894172 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 228-389
Cow position: chr3:30334166-30334326 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 45, 66

Conread position: 230-375
Cow position: chr3:68515488-68515343 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 14, 116

Conread position: 236-474
Cow position: chr3:6383863-6384099 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Show alignments to all cow chromosomes.