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Cow genome map

           
Conread name:
           
mCP1-MI-P-CP1-nwt-d-02-0-UI.s1
        

               
Conread position:
               
10-263
               

               
Cow position:
               
chr28:7645033-7644778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
10-264
               

               
Cow position:
               
chr28:7532296-7532550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
70, 15
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr28:1838292-1837931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 20
               

               
Conread position:
               
71-353
               

               
Cow position:
               
chr28:5200059-5199762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 91
               

               
Conread position:
               
73-273
               

               
Cow position:
               
chr28:24651387-24651581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
74-308
               

               
Cow position:
               
chr28:9384071-9384301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
74-352
               

               
Cow position:
               
chr28:5144286-5144579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
74-356
               

               
Cow position:
               
chr28:4881021-4881300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
74-356
               

               
Cow position:
               
chr28:24966613-24966321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
52, 84
               

               
Conread position:
               
76-296
               

               
Cow position:
               
chr28:4159187-4158953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
50, 9
               

               
Conread position:
               
76-348
               

               
Cow position:
               
chr28:9636237-9636508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
70, 9
               

               
Conread position:
               
77-319
               

               
Cow position:
               
chr28:5867964-5867702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 241
               

               
Conread position:
               
77-353
               

               
Cow position:
               
chr28:34230450-34230171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr28:5204407-5204129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
176, 25
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr28:24082486-24082199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
79-264
               

               
Cow position:
               
chr28:29500628-29500437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
79-344
               

               
Cow position:
               
chr28:11059713-11059451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
79, 50
               

               
Conread position:
               
79-356
               

               
Cow position:
               
chr28:7350871-7350594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
80-296
               

               
Cow position:
               
chr28:4163358-4163581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
22, 83
               

               
Conread position:
               
80-296
               

               
Cow position:
               
chr28:6563672-6563900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
22, 81
               

               
Conread position:
               
80-316
               

               
Cow position:
               
chr28:11743607-11743841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr28:2819984-2819751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 22
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr28:13356149-13356391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
80-323
               

               
Cow position:
               
chr28:4937018-4937271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
80-327
               

               
Cow position:
               
chr28:17740044-17739792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
80-327
               

               
Cow position:
               
chr28:21103599-21103862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 78
               

               
Conread position:
               
80-341
               

               
Cow position:
               
chr28:6059250-6059519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
61, 72
               

               
Conread position:
               
80-350
               

               
Cow position:
               
chr28:7697757-7698037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 225
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chr28:4307670-4307964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
24, 79
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chr28:8347950-8347671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
80-354
               

               
Cow position:
               
chr28:34877750-34878031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr28:20125002-20124720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 51
               

               
Conread position:
               
80-357
               

               
Cow position:
               
chr28:13370924-13371206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
30, 74
               

               
Conread position:
               
80-359
               

               
Cow position:
               
chr28:24707124-24706837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 75
               

               
Conread position:
               
81-250
               

               
Cow position:
               
chr28:1930688-1930845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
81-260
               

               
Cow position:
               
chr28:25518536-25518724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 80
               

               
Conread position:
               
81-261
               

               
Cow position:
               
chr28:4027251-4027423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
77, 19
               

               
Conread position:
               
81-355
               

               
Cow position:
               
chr28:7437256-7437522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr28:21868677-21868392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr28:26982516-26982800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 79
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr28:27161094-27161391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 167
               

               
Conread position:
               
82-300
               

               
Cow position:
               
chr28:659072-659293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
20, 74
               

               
Conread position:
               
82-350
               

               
Cow position:
               
chr28:33322666-33322396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
163, 44
               

               
Conread position:
               
82-355
               

               
Cow position:
               
chr28:7618942-7619215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 19
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr28:8291633-8291361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr28:11307297-11307571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr28:11828739-11829009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
16, 79
               

               
Conread position:
               
83-353
               

               
Cow position:
               
chr28:5236381-5236664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 73
               

               
Conread position:
               
85-280
               

               
Cow position:
               
chr28:11827906-11827707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
85-318
               

               
Cow position:
               
chr28:5630316-5630074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
85-334
               

               
Cow position:
               
chr28:6283274-6283528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
85-338
               

               
Cow position:
               
chr28:12964798-12964522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
85-339
               

               
Cow position:
               
chr28:5236090-5235835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
85-350
               

               
Cow position:
               
chr28:11866452-11866724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
76, 44
               

               
Conread position:
               
85-353
               

               
Cow position:
               
chr28:4282273-4282550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
41, 75
               

               
Conread position:
               
85-353
               

               
Cow position:
               
chr28:27218536-27218264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 70
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr28:3449526-3449238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
17, 76
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr28:10053115-10053396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 76
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr28:17012089-17012355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 68
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr28:25728396-25728136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
178, 17
               

               
Conread position:
               
85-357
               

               
Cow position:
               
chr28:10495081-10495353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
86-250
               

               
Cow position:
               
chr28:22362459-22362304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
86-343
               

               
Cow position:
               
chr28:3725992-3726264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
12, 76
               

               
Conread position:
               
86-353
               

               
Cow position:
               
chr28:11346275-11346544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
88-250
               

               
Cow position:
               
chr28:4379486-4379641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
88-260
               

               
Cow position:
               
chr28:13448330-13448164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 65
               

               
Conread position:
               
88-315
               

               
Cow position:
               
chr28:19262376-19262606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 67
               

               
Conread position:
               
88-326
               

               
Cow position:
               
chr28:31649276-31649054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
205, 61
               

               
Conread position:
               
88-353
               

               
Cow position:
               
chr28:13527410-13527136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
88-354
               

               
Cow position:
               
chr28:28765689-28765966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr28:3011054-3011336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
36, 72
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr28:4016735-4016469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
38, 13
               

               
Conread position:
               
89-294
               

               
Cow position:
               
chr28:24064680-24064895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
90-318
               

               
Cow position:
               
chr28:7964467-7964692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
90-355
               

               
Cow position:
               
chr28:5931555-5931290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
90-355
               

               
Cow position:
               
chr28:13474510-13474238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 91
               

               
Conread position:
               
90-356
               

               
Cow position:
               
chr28:2752265-2752558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
91-242
               

               
Cow position:
               
chr28:5724929-5725089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
91-352
               

               
Cow position:
               
chr28:23410124-23410384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
162, 69
               

               
Conread position:
               
91-356
               

               
Cow position:
               
chr28:5193533-5193257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
38, 65
               

               
Conread position:
               
92-260
               

               
Cow position:
               
chr28:24726244-24726396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
92-261
               

               
Cow position:
               
chr28:3678568-3678402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
92-296
               

               
Cow position:
               
chr28:17727903-17728101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
174, 47
               

               
Conread position:
               
92-305
               

               
Cow position:
               
chr28:5152824-5152591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
36, 46
               

               
Conread position:
               
92-318
               

               
Cow position:
               
chr28:21008462-21008689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
92-352
               

               
Cow position:
               
chr28:4873115-4873408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
92-352
               

               
Cow position:
               
chr28:20759484-20759761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr28:4013292-4013023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr28:4182210-4181940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
37, 64
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr28:4643561-4643831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 91
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr28:5436877-5437151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr28:19564026-19564295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr28:25249544-25249290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
165, 47
               

               
Conread position:
               
92-357
               

               
Cow position:
               
chr28:20409600-20409326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
93-260
               

               
Cow position:
               
chr28:2151232-2151399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
93-313
               

               
Cow position:
               
chr28:32179907-32179678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
93-315
               

               
Cow position:
               
chr28:11398586-11398818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
93-318
               

               
Cow position:
               
chr28:19217020-19216797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
167, 38
               

               
Conread position:
               
93-319
               

               
Cow position:
               
chr28:3143677-3143901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
97, 46
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr28:662308-662045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 69
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr28:3492579-3492848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 40
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr28:4823809-4823543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
72, 44
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr28:7371902-7372185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 66
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr28:26719538-26719287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
90, 36
               

               
Conread position:
               
94-350
               

               
Cow position:
               
chr28:12951624-12951372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 67
               

               
Conread position:
               
94-353
               

               
Cow position:
               
chr28:25195921-25195651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
33, 122
               

               
Conread position:
               
94-354
               

               
Cow position:
               
chr28:23793113-23793368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
94-356
               

               
Cow position:
               
chr28:11422612-11422879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
32, 62
               

               
Conread position:
               
95-289
               

               
Cow position:
               
chr28:4022877-4022678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
31, 60
               

               
Conread position:
               
95-354
               

               
Cow position:
               
chr28:7008775-7009038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
95-356
               

               
Cow position:
               
chr28:30746531-30746791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
97-250
               

               
Cow position:
               
chr28:4077133-4077295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
97-295
               

               
Cow position:
               
chr28:10615746-10615947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
97-296
               

               
Cow position:
               
chr28:5805866-5805669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 54
               

               
Conread position:
               
97-356
               

               
Cow position:
               
chr28:25727572-25727307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 58
               

               
Conread position:
               
98-318
               

               
Cow position:
               
chr28:18770290-18770061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
98-328
               

               
Cow position:
               
chr28:19294936-19295164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
26, 56
               

               
Conread position:
               
101-353
               

               
Cow position:
               
chr28:751428-751170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 59
               

               
Conread position:
               
101-356
               

               
Cow position:
               
chr28:9285177-9285437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
106-350
               

               
Cow position:
               
chr28:25400062-25399815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
160, 42
               

               
Conread position:
               
108-356
               

               
Cow position:
               
chr28:7388586-7388830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
111-290
               

               
Cow position:
               
chr28:8167175-8167346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
114-354
               

               
Cow position:
               
chr28:20412807-20412568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
78, 128
               

               
Conread position:
               
118-350
               

               
Cow position:
               
chr28:10606463-10606685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
119-352
               

               
Cow position:
               
chr28:1538341-1538110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
64, 32
               

               
Conread position:
               
124-320
               

               
Cow position:
               
chr28:17680793-17680596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
125-355
               

               
Cow position:
               
chr28:7131924-7132138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 26
               

               
Conread position:
               
125-356
               

               
Cow position:
               
chr28:12430774-12430544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
126-294
               

               
Cow position:
               
chr28:19038852-19039019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
126-310
               

               
Cow position:
               
chr28:8259798-8259612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
126-335
               

               
Cow position:
               
chr28:4046010-4045805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
140, 52
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr28:11817779-11818022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
25, 194
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr28:18369847-18370065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
192, 25
               

               
Conread position:
               
126-351
               

               
Cow position:
               
chr28:11559467-11559694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
136, 14
               

               
Conread position:
               
126-351
               

               
Cow position:
               
chr28:26743797-26743566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr28:4138501-4138726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr28:20397202-20397430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr28:30293419-30293646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr28:2279436-2279653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
185, 25
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr28:2899164-2898936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr28:7267783-7268007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
140, 21
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr28:9100095-9099871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
132, 26
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr28:25806763-25806509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr28:29434241-29434496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
127-350
               

               
Cow position:
               
chr28:21363908-21363688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
185, 24
               

               
Conread position:
               
127-356
               

               
Cow position:
               
chr28:1632480-1632718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
56, 8
               

               
Conread position:
               
129-353
               

               
Cow position:
               
chr28:19221980-19222211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
132, 22
               

               
Conread position:
               
145-356
               

               
Cow position:
               
chr28:3160802-3161017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 13
               

               
Conread position:
               
150-345
               

               
Cow position:
               
chr28:17601404-17601605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
40, 24
               

               
Conread position:
               
155-325
               

               
Cow position:
               
chr28:7498000-7498179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
155-353
               

               
Cow position:
               
chr28:7684557-7684743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 142
               

               
Conread position:
               
155-353
               

               
Cow position:
               
chr28:31109856-31110064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 152
               

               
Conread position:
               
155-354
               

               
Cow position:
               
chr28:32174776-32174568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
36, 149
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr28:25677193-25677410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
23, 153
               

               
Conread position:
               
159-356
               

               
Cow position:
               
chr28:4841247-4841461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
24, 207
               

               
Conread position:
               
160-353
               

               
Cow position:
               
chr28:19025863-19026072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 146
               

               
Conread position:
               
160-353
               

               
Cow position:
               
chr28:20313415-20313214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
160-356
               

               
Cow position:
               
chr28:8147722-8147925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
29, 80
               

               
Conread position:
               
161-349
               

               
Cow position:
               
chr28:8149491-8149682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 145
               

               
Conread position:
               
171-295
               

               
Cow position:
               
chr28:3147607-3147481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
94, 9
               

               
Conread position:
               
174-356
               

               
Cow position:
               
chr28:23007603-23007797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
78, 132
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr28:5827075-5826888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 28
               

               
Conread position:
               
176-356
               

               
Cow position:
               
chr28:17601749-17601937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 131
               

               
Conread position:
               
177-356
               

               
Cow position:
               
chr28:21355356-21355160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
13, 128
               

               
Conread position:
               
179-353
               

               
Cow position:
               
chr28:16085447-16085263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
88, 126
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr28:3078561-3078746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr28:13865961-13865779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 46
               

               
Conread position:
               
179-356
               

               
Cow position:
               
chr28:32365965-32365779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
78, 20
               

               
Conread position:
               
180-352
               

               
Cow position:
               
chr28:33052158-33051969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
180-355
               

               
Cow position:
               
chr28:4355668-4355492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 32
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr28:17398112-17398289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 126
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr28:17414353-17414530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 126
               

               
Conread position:
               
181-354
               

               
Cow position:
               
chr28:18354207-18354385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
28, 125
               

               
Conread position:
               
181-356
               

               
Cow position:
               
chr28:21598130-21598317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
182-359
               

               
Cow position:
               
chr28:4765796-4765609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 128
               

               
Conread position:
               
182-362
               

               
Cow position:
               
chr28:34247910-34248092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
67, 125
               

               
Conread position:
               
186-342
               

               
Cow position:
               
chr28:34843460-34843624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
66, 116
               

               
Conread position:
               
186-355
               

               
Cow position:
               
chr28:30865532-30865355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
67, 123
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr28:26922253-26922430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 119
               

               
Conread position:
               
186-363
               

               
Cow position:
               
chr28:7156952-7156770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 120
               

               
Conread position:
               
189-352
               

               
Cow position:
               
chr28:13176577-13176743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
189-352
               

               
Cow position:
               
chr28:32366137-32366301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
110, 57
               

               
Conread position:
               
189-354
               

               
Cow position:
               
chr28:24343478-24343309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 88
               

               
Conread position:
               
189-356
               

               
Cow position:
               
chr28:21380992-21380815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
32, 13
               

               
Conread position:
               
189-368
               

               
Cow position:
               
chr28:3425721-3425897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
116, 37
               

               
Conread position:
               
190-354
               

               
Cow position:
               
chr28:7776390-7776564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
85, 5
               

               
Conread position:
               
190-355
               

               
Cow position:
               
chr28:7228280-7228447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 5
               

               
Conread position:
               
191-350
               

               
Cow position:
               
chr28:8408846-8408676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
191-354
               

               
Cow position:
               
chr28:15043752-15043925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
191-356
               

               
Cow position:
               
chr28:26103811-26103645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
62, 13
               

               
Conread position:
               
196-355
               

               
Cow position:
               
chr28:11786612-11786780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
198-352
               

               
Cow position:
               
chr28:23676241-23676079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
54, 108
               

               
Conread position:
               
201-356
               

               
Cow position:
               
chr28:18186656-18186491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 104
               

               
Conread position:
               
204-354
               

               
Cow position:
               
chr28:13267886-13267725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
208-356
               

               
Cow position:
               
chr28:25283287-25283138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 0
               
Show alignments to all cow chromosomes.