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Cow genome map

           
Conread name:
           
mCP1-MI-P-CP1-nwt-d-02-0-UI.s1
        

               
Conread position:
               
10-245
               

               
Cow position:
               
chr9:58440635-58440397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 18
               

               
Conread position:
               
10-250
               

               
Cow position:
               
chr9:20525164-20525388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
10-356
               

               
Cow position:
               
chr9:1867193-1867547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
70, 21
               

               
Conread position:
               
14-356
               

               
Cow position:
               
chr9:5835897-5836252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 141
               

               
Conread position:
               
52-345
               

               
Cow position:
               
chr9:34283745-34284038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
32, 19
               

               
Conread position:
               
68-250
               

               
Cow position:
               
chr9:8967744-8967917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
91, 80
               

               
Conread position:
               
71-352
               

               
Cow position:
               
chr9:54677062-54677341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
54, 30
               

               
Conread position:
               
72-309
               

               
Cow position:
               
chr9:7543452-7543218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 85
               

               
Conread position:
               
73-353
               

               
Cow position:
               
chr9:20406464-20406730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
85, 12
               

               
Conread position:
               
73-355
               

               
Cow position:
               
chr9:8288423-8288714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
73-373
               

               
Cow position:
               
chr9:35832804-35832501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
58, 19
               

               
Conread position:
               
74-354
               

               
Cow position:
               
chr9:3387521-3387786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
5, 53
               

               
Conread position:
               
75-246
               

               
Cow position:
               
chr9:18008941-18008772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
75-309
               

               
Cow position:
               
chr9:38866164-38865934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
27, 49
               

               
Conread position:
               
75-318
               

               
Cow position:
               
chr9:33347671-33347432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
185, 26
               

               
Conread position:
               
75-356
               

               
Cow position:
               
chr9:45728583-45728876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
19, 58
               

               
Conread position:
               
77-320
               

               
Cow position:
               
chr9:22434116-22433869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
77-353
               

               
Cow position:
               
chr9:13744120-13743838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 79
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr9:28747707-28747425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
77-356
               

               
Cow position:
               
chr9:49764455-49764754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
48, 123
               

               
Conread position:
               
78-250
               

               
Cow position:
               
chr9:37062411-37062577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
79-248
               

               
Cow position:
               
chr9:35534192-35534018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
79-261
               

               
Cow position:
               
chr9:5836589-5836758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 73
               

               
Conread position:
               
79-282
               

               
Cow position:
               
chr9:17855601-17855811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 159
               

               
Conread position:
               
79-287
               

               
Cow position:
               
chr9:53602035-53602246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
24, 37
               

               
Conread position:
               
79-288
               

               
Cow position:
               
chr9:28315237-28315451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chr9:2037248-2037488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
79-318
               

               
Cow position:
               
chr9:12786663-12786415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
79-323
               

               
Cow position:
               
chr9:5104598-5104340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
47, 81
               

               
Conread position:
               
79-356
               

               
Cow position:
               
chr9:40215065-40215339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
31, 75
               

               
Conread position:
               
80-253
               

               
Cow position:
               
chr9:29332518-29332334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
23, 74
               

               
Conread position:
               
80-260
               

               
Cow position:
               
chr9:8645083-8645259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 73
               

               
Conread position:
               
80-260
               

               
Cow position:
               
chr9:33584873-33584692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
15, 53
               

               
Conread position:
               
80-310
               

               
Cow position:
               
chr9:25375920-25375686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
80-314
               

               
Cow position:
               
chr9:14975113-14974865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
49, 12
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr9:8992367-8992121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
22, 53
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr9:23971081-23970838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 109
               

               
Conread position:
               
80-318
               

               
Cow position:
               
chr9:50977443-50977186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
80-329
               

               
Cow position:
               
chr9:12337714-12337973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 21
               

               
Conread position:
               
80-339
               

               
Cow position:
               
chr9:41785034-41785292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
67, 52
               

               
Conread position:
               
80-344
               

               
Cow position:
               
chr9:50382504-50382239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 21
               

               
Conread position:
               
80-350
               

               
Cow position:
               
chr9:42061903-42062193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
80-351
               

               
Cow position:
               
chr9:44709645-44709917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 38
               

               
Conread position:
               
80-352
               

               
Cow position:
               
chr9:53762512-53762792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 77
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chr9:4268190-4267889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
46, 289
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chr9:9199959-9199686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
19, 56
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chr9:34286612-34286897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
80-353
               

               
Cow position:
               
chr9:48118865-48118601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
11, 73
               

               
Conread position:
               
80-354
               

               
Cow position:
               
chr9:44584417-44584685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
172, 19
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr9:6839809-6840099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 75
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr9:9311682-9311958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
20, 38
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr9:34902284-34902011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
77, 49
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr9:36410534-36410260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
52, 19
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr9:39011652-39011371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
80-356
               

               
Cow position:
               
chr9:45171411-45171121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 67
               

               
Conread position:
               
80-360
               

               
Cow position:
               
chr9:6954435-6954145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
37, 76
               

               
Conread position:
               
81-249
               

               
Cow position:
               
chr9:10316563-10316402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 71
               

               
Conread position:
               
81-251
               

               
Cow position:
               
chr9:19657160-19656992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
81-261
               

               
Cow position:
               
chr9:34264899-34265089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
81-273
               

               
Cow position:
               
chr9:32858831-32858626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
81-279
               

               
Cow position:
               
chr9:8535673-8535879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
81-284
               

               
Cow position:
               
chr9:54611503-54611301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
75, 11
               

               
Conread position:
               
81-336
               

               
Cow position:
               
chr9:40507781-40507521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
15, 33
               

               
Conread position:
               
81-350
               

               
Cow position:
               
chr9:8723609-8723888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
81-353
               

               
Cow position:
               
chr9:34410579-34410301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
48, 81
               

               
Conread position:
               
81-353
               

               
Cow position:
               
chr9:35028350-35028072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
48, 18
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr9:4580588-4580312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr9:19067583-19067882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 151
               

               
Conread position:
               
81-356
               

               
Cow position:
               
chr9:52840087-52839789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 27
               

               
Conread position:
               
82-296
               

               
Cow position:
               
chr9:55354414-55354647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
82-296
               

               
Cow position:
               
chr9:59699737-59699511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
47, 73
               

               
Conread position:
               
82-301
               

               
Cow position:
               
chr9:9091295-9091073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 80
               

               
Conread position:
               
82-324
               

               
Cow position:
               
chr9:34484408-34484658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
10, 75
               

               
Conread position:
               
82-329
               

               
Cow position:
               
chr9:21460334-21460084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
25, 73
               

               
Conread position:
               
82-350
               

               
Cow position:
               
chr9:26102550-26102815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
44, 22
               

               
Conread position:
               
82-352
               

               
Cow position:
               
chr9:23632849-23632566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
12, 77
               

               
Conread position:
               
82-352
               

               
Cow position:
               
chr9:37934424-37934142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
82-353
               

               
Cow position:
               
chr9:32670131-32669853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 74
               

               
Conread position:
               
82-356
               

               
Cow position:
               
chr9:26477025-26477314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
22, 80
               

               
Conread position:
               
85-257
               

               
Cow position:
               
chr9:8573204-8573383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
85-282
               

               
Cow position:
               
chr9:20828721-20828924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
17, 75
               

               
Conread position:
               
85-296
               

               
Cow position:
               
chr9:11098633-11098420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
112, 89
               

               
Conread position:
               
85-325
               

               
Cow position:
               
chr9:45285720-45285470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
85-352
               

               
Cow position:
               
chr9:26085875-26086157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
54, 76
               

               
Conread position:
               
85-352
               

               
Cow position:
               
chr9:50310943-50310678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
85-353
               

               
Cow position:
               
chr9:8901414-8901129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
17, 81
               

               
Conread position:
               
85-353
               

               
Cow position:
               
chr9:47446190-47445933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
85-353
               

               
Cow position:
               
chr9:60395230-60394956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 16
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr9:5433462-5433735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
11, 45
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr9:6934263-6933976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
41, 76
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr9:33120060-33119788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
168, 26
               

               
Conread position:
               
85-356
               

               
Cow position:
               
chr9:38941619-38941334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
44, 225
               

               
Conread position:
               
85-361
               

               
Cow position:
               
chr9:31514107-31513837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
86-260
               

               
Cow position:
               
chr9:57642331-57642500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 73
               

               
Conread position:
               
86-317
               

               
Cow position:
               
chr9:52763934-52763703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
72, 49
               

               
Conread position:
               
86-349
               

               
Cow position:
               
chr9:44396479-44396749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
86-349
               

               
Cow position:
               
chr9:58662062-58662329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
38, 80
               

               
Conread position:
               
86-355
               

               
Cow position:
               
chr9:34375109-34374833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
16, 77
               

               
Conread position:
               
86-356
               

               
Cow position:
               
chr9:11168563-11168827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 66
               

               
Conread position:
               
86-356
               

               
Cow position:
               
chr9:19758534-19758806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
27, 39
               

               
Conread position:
               
86-362
               

               
Cow position:
               
chr9:52406988-52407270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
87-317
               

               
Cow position:
               
chr9:37069748-37069500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 229
               

               
Conread position:
               
87-353
               

               
Cow position:
               
chr9:37198947-37199218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
88-251
               

               
Cow position:
               
chr9:3369818-3369978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
102, 13
               

               
Conread position:
               
88-316
               

               
Cow position:
               
chr9:17741107-17740887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
169, 34
               

               
Conread position:
               
88-348
               

               
Cow position:
               
chr9:56032491-56032229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 68
               

               
Conread position:
               
88-355
               

               
Cow position:
               
chr9:28726908-28726624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
39, 70
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr9:1878177-1877910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
169, 40
               

               
Conread position:
               
88-356
               

               
Cow position:
               
chr9:26310317-26310606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 35
               

               
Conread position:
               
89-356
               

               
Cow position:
               
chr9:4263266-4262995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
37, 16
               

               
Conread position:
               
89-356
               

               
Cow position:
               
chr9:42497650-42497923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
37, 72
               

               
Conread position:
               
90-326
               

               
Cow position:
               
chr9:24652233-24652469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
90-328
               

               
Cow position:
               
chr9:47214722-47214478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
27, 66
               

               
Conread position:
               
90-348
               

               
Cow position:
               
chr9:29819549-29819805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
171, 49
               

               
Conread position:
               
91-260
               

               
Cow position:
               
chr9:23840581-23840401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
91-289
               

               
Cow position:
               
chr9:61847291-61847102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 38
               

               
Conread position:
               
91-308
               

               
Cow position:
               
chr9:11030008-11030232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 48
               

               
Conread position:
               
91-355
               

               
Cow position:
               
chr9:35166993-35167274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
91-356
               

               
Cow position:
               
chr9:3185961-3186225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
28, 19
               

               
Conread position:
               
91-356
               

               
Cow position:
               
chr9:5500688-5500955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
75, 38
               

               
Conread position:
               
91-356
               

               
Cow position:
               
chr9:47868848-47869106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
224, 39
               

               
Conread position:
               
92-260
               

               
Cow position:
               
chr9:22374987-22375167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
92-273
               

               
Cow position:
               
chr9:22447469-22447285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
92-282
               

               
Cow position:
               
chr9:3847219-3847424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
92-294
               

               
Cow position:
               
chr9:35306524-35306312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
34, 58
               

               
Conread position:
               
92-297
               

               
Cow position:
               
chr9:52807596-52807368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 212
               

               
Conread position:
               
92-308
               

               
Cow position:
               
chr9:36457821-36458048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
92-324
               

               
Cow position:
               
chr9:5757155-5756925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
12, 40
               

               
Conread position:
               
92-327
               

               
Cow position:
               
chr9:34024524-34024766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
92-340
               

               
Cow position:
               
chr9:5110681-5110942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
92-341
               

               
Cow position:
               
chr9:7806129-7805880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 52
               

               
Conread position:
               
92-352
               

               
Cow position:
               
chr9:5342421-5342158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
92-354
               

               
Cow position:
               
chr9:6852226-6851973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
169, 34
               

               
Conread position:
               
92-354
               

               
Cow position:
               
chr9:9461842-9461560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
92-355
               

               
Cow position:
               
chr9:30477947-30477679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
36, 55
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:9443777-9443506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 59
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:9596125-9595857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
33, 68
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:10144657-10144379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
11, 65
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:13670461-13670734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:20579763-20579502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
217, 38
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:29339483-29339225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
37, 14
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:31557897-31557630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
28, 17
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:33114164-33114444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
37, 68
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:51620269-51620535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 66
               

               
Conread position:
               
92-356
               

               
Cow position:
               
chr9:60080717-60081003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
11, 69
               

               
Conread position:
               
92-363
               

               
Cow position:
               
chr9:34279234-34278951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
93-289
               

               
Cow position:
               
chr9:34135555-34135745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
164, 36
               

               
Conread position:
               
93-294
               

               
Cow position:
               
chr9:54664674-54664887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 67
               

               
Conread position:
               
93-296
               

               
Cow position:
               
chr9:32089218-32089425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
77, 58
               

               
Conread position:
               
93-296
               

               
Cow position:
               
chr9:34014440-34014213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr9:24887031-24887297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr9:41282838-41283111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
33, 67
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr9:47906459-47906179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
33, 62
               

               
Conread position:
               
93-356
               

               
Cow position:
               
chr9:50202380-50202667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
94-272
               

               
Cow position:
               
chr9:53323960-53323779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 66
               

               
Conread position:
               
94-351
               

               
Cow position:
               
chr9:8834304-8834037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
94-354
               

               
Cow position:
               
chr9:23541573-23541312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
33, 64
               

               
Conread position:
               
94-355
               

               
Cow position:
               
chr9:1751156-1751434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
94-356
               

               
Cow position:
               
chr9:5263331-5263599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 64
               

               
Conread position:
               
94-356
               

               
Cow position:
               
chr9:19902918-19903177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
9, 36
               

               
Conread position:
               
94-356
               

               
Cow position:
               
chr9:58979232-58979495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
95-351
               

               
Cow position:
               
chr9:21384114-21383860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
53, 45
               

               
Conread position:
               
95-354
               

               
Cow position:
               
chr9:16216806-16217069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
31, 66
               

               
Conread position:
               
95-356
               

               
Cow position:
               
chr9:5392900-5393146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
96-260
               

               
Cow position:
               
chr9:54086181-54086022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
18, 57
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chr9:32676506-32676775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
30, 62
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chr9:33597802-33598078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
33, 237
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chr9:38624795-38624527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
96-356
               

               
Cow position:
               
chr9:40005306-40005573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
37, 62
               

               
Conread position:
               
97-260
               

               
Cow position:
               
chr9:5155932-5156094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
70, 54
               

               
Conread position:
               
97-289
               

               
Cow position:
               
chr9:6118601-6118409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
97-308
               

               
Cow position:
               
chr9:27345759-27345536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 63
               

               
Conread position:
               
97-341
               

               
Cow position:
               
chr9:9686588-9686331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
97-350
               

               
Cow position:
               
chr9:25583661-25583922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
32, 60
               

               
Conread position:
               
97-356
               

               
Cow position:
               
chr9:51566668-51566397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
32, 63
               

               
Conread position:
               
98-264
               

               
Cow position:
               
chr9:52291172-52291020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
98-353
               

               
Cow position:
               
chr9:52510946-52511209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
28, 64
               

               
Conread position:
               
99-356
               

               
Cow position:
               
chr9:1972781-1973039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
26, 14
               

               
Conread position:
               
100-260
               

               
Cow position:
               
chr9:48901002-48900843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 56
               

               
Conread position:
               
101-250
               

               
Cow position:
               
chr9:11161172-11161312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
101-260
               

               
Cow position:
               
chr9:39957158-39957323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
74, 48
               

               
Conread position:
               
101-344
               

               
Cow position:
               
chr9:56065400-56065641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
64, 29
               

               
Conread position:
               
101-356
               

               
Cow position:
               
chr9:43159589-43159839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
102-241
               

               
Cow position:
               
chr9:33075492-33075349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 46
               

               
Conread position:
               
102-266
               

               
Cow position:
               
chr9:15389389-15389223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
102-318
               

               
Cow position:
               
chr9:8562638-8562878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
102-356
               

               
Cow position:
               
chr9:16300739-16300463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
24, 55
               

               
Conread position:
               
103-250
               

               
Cow position:
               
chr9:26683586-26683447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
103-254
               

               
Cow position:
               
chr9:3410365-3410514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
23, 52
               

               
Conread position:
               
103-349
               

               
Cow position:
               
chr9:5650125-5649882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
103-353
               

               
Cow position:
               
chr9:11123644-11123388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
58, 26
               

               
Conread position:
               
103-356
               

               
Cow position:
               
chr9:30123766-30124018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
103-356
               

               
Cow position:
               
chr9:42446150-42445882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 48
               

               
Conread position:
               
104-356
               

               
Cow position:
               
chr9:56011349-56011596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
148, 47
               

               
Conread position:
               
106-356
               

               
Cow position:
               
chr9:41513485-41513721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
217, 45
               

               
Conread position:
               
108-352
               

               
Cow position:
               
chr9:11304240-11303986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
19, 199
               

               
Conread position:
               
109-356
               

               
Cow position:
               
chr9:38645507-38645245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
112-296
               

               
Cow position:
               
chr9:54051618-54051810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
114-356
               

               
Cow position:
               
chr9:9815267-9815512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
147, 11
               

               
Conread position:
               
115-349
               

               
Cow position:
               
chr9:33822972-33823210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
116-356
               

               
Cow position:
               
chr9:22152225-22151985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
11, 39
               

               
Conread position:
               
124-356
               

               
Cow position:
               
chr9:9551957-9552190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 20
               

               
Conread position:
               
125-293
               

               
Cow position:
               
chr9:49402515-49402684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
64, 54
               

               
Conread position:
               
125-352
               

               
Cow position:
               
chr9:52754985-52754763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
139, 26
               

               
Conread position:
               
125-354
               

               
Cow position:
               
chr9:26279305-26279076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
125-356
               

               
Cow position:
               
chr9:8998220-8998454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 8
               

               
Conread position:
               
125-356
               

               
Cow position:
               
chr9:26057563-26057344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
187, 26
               

               
Conread position:
               
125-363
               

               
Cow position:
               
chr9:29195165-29194918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
128, 26
               

               
Conread position:
               
126-270
               

               
Cow position:
               
chr9:8592562-8592424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
126-273
               

               
Cow position:
               
chr9:35932946-35932809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
30, 36
               

               
Conread position:
               
126-284
               

               
Cow position:
               
chr9:40603535-40603692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 25
               

               
Conread position:
               
126-290
               

               
Cow position:
               
chr9:34707442-34707282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
126-306
               

               
Cow position:
               
chr9:20637243-20637418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
126, 26
               

               
Conread position:
               
126-314
               

               
Cow position:
               
chr9:7859770-7859583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
126-315
               

               
Cow position:
               
chr9:9243412-9243594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
179, 25
               

               
Conread position:
               
126-344
               

               
Cow position:
               
chr9:33541920-33542142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
131, 25
               

               
Conread position:
               
126-349
               

               
Cow position:
               
chr9:5164120-5163893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
132, 28
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr9:15215822-15215594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr9:30402561-30402329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
126-350
               

               
Cow position:
               
chr9:37016768-37016988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
179, 15
               

               
Conread position:
               
126-351
               

               
Cow position:
               
chr9:55288021-55287799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
42, 25
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr9:4629977-4630198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
134, 25
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr9:5469737-5469956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 27
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr9:9724011-9723790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
140, 25
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr9:18253052-18252829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
179, 25
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr9:33940464-33940698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
58, 74
               

               
Conread position:
               
126-352
               

               
Cow position:
               
chr9:54716749-54716513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr9:9753535-9753299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr9:27279174-27279403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr9:31359473-31359695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
141, 25
               

               
Conread position:
               
126-353
               

               
Cow position:
               
chr9:52267894-52267662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
126-354
               

               
Cow position:
               
chr9:31346817-31347051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
133, 25
               

               
Conread position:
               
126-354
               

               
Cow position:
               
chr9:39709721-39709940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 21
               

               
Conread position:
               
126-355
               

               
Cow position:
               
chr9:12226117-12225881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:3070549-3070323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 26
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:5327130-5327353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 26
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:10010680-10010899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:12910532-12910304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
135, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:15806058-15805823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:20416646-20416411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:32307366-32307139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:33219089-33218852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
64, 25
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:36843651-36843884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
57, 189
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:38846473-38846246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5.99994e-41
               

               
Alignm gaps (pig, cow):
               
30, 58
               

               
Conread position:
               
126-356
               

               
Cow position:
               
chr9:52513598-52513355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
40, 25
               

               
Conread position:
               
126-357
               

               
Cow position:
               
chr9:61738789-61739024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
131, 25
               

               
Conread position:
               
127-318
               

               
Cow position:
               
chr9:58369124-58368939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
127-319
               

               
Cow position:
               
chr9:52258197-52258008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
65, 26
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr9:32955825-32955614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
44, 13
               

               
Conread position:
               
127-350
               

               
Cow position:
               
chr9:29185271-29185041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
127-353
               

               
Cow position:
               
chr9:19034223-19034434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
170, 24
               

               
Conread position:
               
128-349
               

               
Cow position:
               
chr9:20322221-20322014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
130-356
               

               
Cow position:
               
chr9:41394778-41394551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
131, 21
               

               
Conread position:
               
134-329
               

               
Cow position:
               
chr9:1729801-1729605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
119, 17
               

               
Conread position:
               
135-353
               

               
Cow position:
               
chr9:28392156-28391941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
135-356
               

               
Cow position:
               
chr9:44770323-44770100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
183, 16
               

               
Conread position:
               
135-356
               

               
Cow position:
               
chr9:64064493-64064259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 53
               

               
Conread position:
               
147-356
               

               
Cow position:
               
chr9:33092839-33093050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
54, 42
               

               
Conread position:
               
148-321
               

               
Cow position:
               
chr9:39315733-39315908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 77
               

               
Conread position:
               
148-356
               

               
Cow position:
               
chr9:24997638-24997422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 14
               

               
Conread position:
               
149-354
               

               
Cow position:
               
chr9:11068594-11068375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
149-355
               

               
Cow position:
               
chr9:54528396-54528608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
41, 31
               

               
Conread position:
               
152-354
               

               
Cow position:
               
chr9:7362914-7363120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
153-355
               

               
Cow position:
               
chr9:64559993-64559788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
37, 20
               

               
Conread position:
               
153-356
               

               
Cow position:
               
chr9:18217212-18217002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
155-296
               

               
Cow position:
               
chr9:31814499-31814349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
155-297
               

               
Cow position:
               
chr9:24243836-24243684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
155-318
               

               
Cow position:
               
chr9:34888401-34888240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
155-350
               

               
Cow position:
               
chr9:22696110-22696313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
35, 90
               

               
Conread position:
               
155-350
               

               
Cow position:
               
chr9:58134117-58133927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 94
               

               
Conread position:
               
155-353
               

               
Cow position:
               
chr9:10309105-10308914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
98, 19
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr9:1520852-1520640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
35, 47
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr9:36445509-36445726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr9:44467453-44467255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 95
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr9:50081153-50080949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
37, 151
               

               
Conread position:
               
155-356
               

               
Cow position:
               
chr9:55532704-55532912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
28, 7
               

               
Conread position:
               
156-353
               

               
Cow position:
               
chr9:37677784-37677979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
106, 30
               

               
Conread position:
               
157-353
               

               
Cow position:
               
chr9:43342226-43342424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
105, 17
               

               
Conread position:
               
157-356
               

               
Cow position:
               
chr9:17310673-17310465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
26, 49
               

               
Conread position:
               
159-350
               

               
Cow position:
               
chr9:25921712-25921919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 11
               

               
Conread position:
               
159-351
               

               
Cow position:
               
chr9:35105897-35105697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
31, 15
               

               
Conread position:
               
159-355
               

               
Cow position:
               
chr9:8534799-8534592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
19, 147
               

               
Conread position:
               
160-344
               

               
Cow position:
               
chr9:59386875-59386683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
160-353
               

               
Cow position:
               
chr9:11319742-11319539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
30, 193
               

               
Conread position:
               
160-356
               

               
Cow position:
               
chr9:46664717-46664919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
160-356
               

               
Cow position:
               
chr9:50543535-50543325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
160-356
               

               
Cow position:
               
chr9:55889707-55889908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 40
               

               
Conread position:
               
161-340
               

               
Cow position:
               
chr9:8976512-8976339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
161-354
               

               
Cow position:
               
chr9:29840799-29840980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
156, 25
               

               
Conread position:
               
161-356
               

               
Cow position:
               
chr9:21888067-21888264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
100, 18
               

               
Conread position:
               
162-353
               

               
Cow position:
               
chr9:39681234-39681434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
165-293
               

               
Cow position:
               
chr9:35793578-35793710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
87, 19
               

               
Conread position:
               
165-356
               

               
Cow position:
               
chr9:50139182-50139384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
166-356
               

               
Cow position:
               
chr9:52598824-52598626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
12, 141
               

               
Conread position:
               
166-357
               

               
Cow position:
               
chr9:62668148-62668352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
24, 43
               

               
Conread position:
               
167-356
               

               
Cow position:
               
chr9:41781555-41781751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
94, 19
               

               
Conread position:
               
167-356
               

               
Cow position:
               
chr9:64050662-64050463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
23, 141
               

               
Conread position:
               
168-351
               

               
Cow position:
               
chr9:17411293-17411099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
176-355
               

               
Cow position:
               
chr9:32115690-32115509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
17, 8
               

               
Conread position:
               
177-356
               

               
Cow position:
               
chr9:22443717-22443530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
179-353
               

               
Cow position:
               
chr9:19493554-19493369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
82, 127
               

               
Conread position:
               
179-354
               

               
Cow position:
               
chr9:31079168-31078987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
179-354
               

               
Cow position:
               
chr9:40542047-40542214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
11, 37
               

               
Conread position:
               
180-296
               

               
Cow position:
               
chr9:60355301-60355176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
180-345
               

               
Cow position:
               
chr9:3343661-3343835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
11, 126
               

               
Conread position:
               
180-353
               

               
Cow position:
               
chr9:11313602-11313417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
10, 164
               

               
Conread position:
               
180-354
               

               
Cow position:
               
chr9:55084389-55084202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 61
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr9:25400285-25400099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
74, 111
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr9:43443716-43443899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
10, 123
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr9:43870887-43871076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr9:51720985-51720805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
10, 126
               

               
Conread position:
               
180-356
               

               
Cow position:
               
chr9:54681423-54681604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
73, 22
               

               
Conread position:
               
180-360
               

               
Cow position:
               
chr9:48100709-48100899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
181-323
               

               
Cow position:
               
chr9:31098972-31098820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
181-353
               

               
Cow position:
               
chr9:50075978-50076152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
72, 139
               

               
Conread position:
               
181-356
               

               
Cow position:
               
chr9:33696950-33697127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
87, 34
               

               
Conread position:
               
182-346
               

               
Cow position:
               
chr9:623270-623436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
69, 142
               

               
Conread position:
               
182-351
               

               
Cow position:
               
chr9:64637467-64637637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
85, 162
               

               
Conread position:
               
183-352
               

               
Cow position:
               
chr9:5509641-5509817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
9, 19
               

               
Conread position:
               
183-356
               

               
Cow position:
               
chr9:5245769-5245959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
78, 150
               

               
Conread position:
               
183-356
               

               
Cow position:
               
chr9:50607029-50606851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 125
               

               
Conread position:
               
184-356
               

               
Cow position:
               
chr9:6879696-6879870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 83
               

               
Conread position:
               
185-350
               

               
Cow position:
               
chr9:38289405-38289233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
185-356
               

               
Cow position:
               
chr9:11299762-11299593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
137, 79
               

               
Conread position:
               
185-356
               

               
Cow position:
               
chr9:32982157-32981974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
186-328
               

               
Cow position:
               
chr9:26859274-26859414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
186-350
               

               
Cow position:
               
chr9:42478563-42478390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
186-351
               

               
Cow position:
               
chr9:26403704-26403877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
75, 119
               

               
Conread position:
               
186-353
               

               
Cow position:
               
chr9:5763711-5763537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
71, 19
               

               
Conread position:
               
186-353
               

               
Cow position:
               
chr9:9503008-9503174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
73, 31
               

               
Conread position:
               
186-353
               

               
Cow position:
               
chr9:23788358-23788532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
75, 123
               

               
Conread position:
               
186-353
               

               
Cow position:
               
chr9:23797155-23797331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
67, 119
               

               
Conread position:
               
186-354
               

               
Cow position:
               
chr9:17518570-17518395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr9:10819909-10819735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
66, 118
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr9:22461813-22461643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
14, 52
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr9:55075209-55075036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 115
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr9:55321556-55321739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
76, 119
               

               
Conread position:
               
186-356
               

               
Cow position:
               
chr9:62656722-62656899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
63, 126
               

               
Conread position:
               
186-357
               

               
Cow position:
               
chr9:28354436-28354619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
75, 116
               

               
Conread position:
               
188-355
               

               
Cow position:
               
chr9:4646403-4646232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
74, 16
               

               
Conread position:
               
189-354
               

               
Cow position:
               
chr9:3774087-3774256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
189-355
               

               
Cow position:
               
chr9:5594425-5594598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
189-356
               

               
Cow position:
               
chr9:15225374-15225201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
64, 134
               

               
Conread position:
               
191-352
               

               
Cow position:
               
chr9:46316857-46316690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
62, 42
               

               
Conread position:
               
191-356
               

               
Cow position:
               
chr9:3220060-3220234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
192-356
               

               
Cow position:
               
chr9:24872761-24872933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 110
               

               
Conread position:
               
192-356
               

               
Cow position:
               
chr9:42298117-42298281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
70, 56
               

               
Conread position:
               
193-355
               

               
Cow position:
               
chr9:63896467-63896638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
65, 106
               

               
Conread position:
               
193-356
               

               
Cow position:
               
chr9:41679673-41679843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
193-356
               

               
Cow position:
               
chr9:51557559-51557395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
61, 8
               

               
Conread position:
               
194-354
               

               
Cow position:
               
chr9:49416914-49417082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
58, 112
               

               
Conread position:
               
194-355
               

               
Cow position:
               
chr9:32371824-32371664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
54, 105
               

               
Conread position:
               
197-356
               

               
Cow position:
               
chr9:39577669-39577830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
197-361
               

               
Cow position:
               
chr9:13761029-13761205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
198-354
               

               
Cow position:
               
chr9:40776729-40776893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
59, 113
               

               
Conread position:
               
202-355
               

               
Cow position:
               
chr9:49709782-49709940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
61, 103
               

               
Conread position:
               
209-356
               

               
Cow position:
               
chr9:43936887-43937037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
40, 96
               

               
Conread position:
               
226-356
               

               
Cow position:
               
chr9:41789243-41789382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
251-356
               

               
Cow position:
               
chr9:6225464-6225356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
67, 0
               
Show alignments to all cow chromosomes.