Cow genome map
| Conread name: | mCP1-MI-P-CP1-nzb-b-14-0-UI.s1 |
| Conread position: | 1-115 |
| Cow position: | chrX:42506814-42506699 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 1-117 |
| Cow position: | chrX:3130775-3130885 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1-136 |
| Cow position: | chrX:7648281-7648144 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 125 |
| Conread position: | 2-97 |
| Cow position: | chrX:29451412-29451317 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-98 |
| Cow position: | chrX:27508891-27508795 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 80 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-106 |
| Cow position: | chrX:41790294-41790189 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-118 |
| Cow position: | chrX:11674245-11674362 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-123 |
| Cow position: | chrX:24170592-24170466 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 3-95 |
| Cow position: | chrX:22552844-22552753 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 3-96 |
| Cow position: | chrX:876712-876620 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-97 |
| Cow position: | chrX:4632720-4632626 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-97 |
| Cow position: | chrX:19161996-19161902 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-97 |
| Cow position: | chrX:27442404-27442310 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-97 |
| Cow position: | chrX:36283474-36283568 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-98 |
| Cow position: | chrX:18196133-18196229 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 3-100 |
| Cow position: | chrX:36866307-36866404 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-100 |
| Cow position: | chrX:40337045-40337142 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-103 |
| Cow position: | chrX:597344-597243 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 3-106 |
| Cow position: | chrX:36367800-36367697 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-107 |
| Cow position: | chrX:34398649-34398545 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-108 |
| Cow position: | chrX:4109319-4109424 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-109 |
| Cow position: | chrX:32215363-32215471 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 3-109 |
| Cow position: | chrX:37717856-37717962 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-113 |
| Cow position: | chrX:23335841-23335728 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 3-117 |
| Cow position: | chrX:10479884-10479998 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-97 |
| Cow position: | chrX:34193945-34193852 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-97 |
| Cow position: | chrX:35285309-35285402 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-97 |
| Cow position: | chrX:43150566-43150659 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-98 |
| Cow position: | chrX:8642180-8642274 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 83 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-98 |
| Cow position: | chrX:40680750-40680844 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 80 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-101 |
| Cow position: | chrX:42247046-42246949 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-102 |
| Cow position: | chrX:30962740-30962640 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 4-103 |
| Cow position: | chrX:37867389-37867488 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-104 |
| Cow position: | chrX:4559869-4559969 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 83 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-104 |
| Cow position: | chrX:11670822-11670924 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 4-106 |
| Cow position: | chrX:19356599-19356703 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 88 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 4-107 |
| Cow position: | chrX:17524248-17524145 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-109 |
| Cow position: | chrX:6407679-6407783 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 4-114 |
| Cow position: | chrX:1996316-1996204 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 4-115 |
| Cow position: | chrX:42760388-42760499 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-120 |
| Cow position: | chrX:17498458-17498575 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 4-121 |
| Cow position: | chrX:20339758-20339641 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 61 |
| Conread position: | 4-124 |
| Cow position: | chrX:25815766-25815646 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 4-125 |
| Cow position: | chrX:17231872-17231996 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 4-142 |
| Cow position: | chrX:41194040-41194175 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 5-106 |
| Cow position: | chrX:51766-51665 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-115 |
| Cow position: | chrX:35409888-35410000 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 5-116 |
| Cow position: | chrX:8759759-8759871 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 5-120 |
| Cow position: | chrX:38080284-38080398 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 6-118 |
| Cow position: | chrX:26979652-26979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 6-120 |
| Cow position: | chrX:1938150-1938265 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 7-96 |
| Cow position: | chrX:42220563-42220474 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-127 |
| Cow position: | chrX:33001050-33001162 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 22-119 |
| Cow position: | chrX:25282861-25282764 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.