Cow genome map
| Conread name: | mE3-MI-P-E3-aal-d-12-1-UM.s1 |
| Conread position: | 4-229 |
| Cow position: | chr5:55966896-55967125 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 5-319 |
| Cow position: | chr5:26990374-26990066 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 61 |
| Conread position: | 9-187 |
| Cow position: | chr5:56518232-56518410 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 9-222 |
| Cow position: | chr5:45036999-45036785 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 12, 100 |
| Conread position: | 9-223 |
| Cow position: | chr5:17063112-17063330 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 9-325 |
| Cow position: | chr5:60520140-60519837 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 57 |
| Conread position: | 9-382 |
| Cow position: | chr5:21828844-21828461 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 9-383 |
| Cow position: | chr5:27155002-27154629 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 59 |
| Conread position: | 9-386 |
| Cow position: | chr5:67932489-67932869 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 9-390 |
| Cow position: | chr5:27015659-27015290 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 9-399 |
| Cow position: | chr5:30816697-30816303 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 9-399 |
| Cow position: | chr5:65776404-65776809 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 10-229 |
| Cow position: | chr5:52000199-51999977 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 11, 56 |
| Conread position: | 11-208 |
| Cow position: | chr5:16025485-16025682 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 11-232 |
| Cow position: | chr5:32956120-32956335 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 55 |
| Conread position: | 16-382 |
| Cow position: | chr5:16206188-16206537 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 17-274 |
| Cow position: | chr5:63917444-63917694 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 139, 9 |
| Conread position: | 18-196 |
| Cow position: | chr5:40039804-40039980 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 18-228 |
| Cow position: | chr5:37814588-37814382 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 133, 59 |
| Conread position: | 18-274 |
| Cow position: | chr5:43474813-43474567 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 18-386 |
| Cow position: | chr5:29828015-29827654 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 18-396 |
| Cow position: | chr5:57935143-57935514 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 18-399 |
| Cow position: | chr5:9090054-9090417 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 45 |
| Conread position: | 18-399 |
| Cow position: | chr5:44054069-44054446 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 45 |
| Conread position: | 25-216 |
| Cow position: | chr5:56070815-56070624 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 47, 38 |
| Conread position: | 25-399 |
| Cow position: | chr5:50600015-50599659 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
Show alignments to all cow chromosomes.