Cow genome map
| Conread name: | mE4-MI-P-E4-abp-f-06-1-UM.s1 |
| Conread position: | 299-521 |
| Cow position: | chr12:43474983-43474752 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 20, 39 |
| Conread position: | 308-521 |
| Cow position: | chr12:39149837-39150060 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 27 |
| Conread position: | 323-527 |
| Cow position: | chr12:35310485-35310700 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 324-533 |
| Cow position: | chr12:18103419-18103633 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 337-533 |
| Cow position: | chr12:33976393-33976180 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 205 |
| Conread position: | 342-521 |
| Cow position: | chr12:24396983-24397171 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 343-515 |
| Cow position: | chr12:35137101-35136916 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 344-517 |
| Cow position: | chr12:45782402-45782222 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 345-521 |
| Cow position: | chr12:11106415-11106589 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 349-533 |
| Cow position: | chr12:15389243-15389050 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 7 |
| Conread position: | 351-488 |
| Cow position: | chr12:8481672-8481818 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 31, 103 |
| Conread position: | 352-512 |
| Cow position: | chr12:38031972-38032139 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 352-521 |
| Cow position: | chr12:4720115-4719939 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 352-521 |
| Cow position: | chr12:14223154-14222973 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 352-555 |
| Cow position: | chr12:35368815-35368600 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 104 |
| Conread position: | 356-525 |
| Cow position: | chr12:43974459-43974277 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 356-527 |
| Cow position: | chr12:11587936-11587759 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 41 |
| Conread position: | 356-551 |
| Cow position: | chr12:42967162-42966957 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 361-505 |
| Cow position: | chr12:4769081-4768933 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 361-515 |
| Cow position: | chr12:9482140-9482307 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 116 |
| Conread position: | 361-521 |
| Cow position: | chr12:26234002-26234171 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 361-521 |
| Cow position: | chr12:35770862-35771029 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 361-522 |
| Cow position: | chr12:3454859-3454685 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 361-526 |
| Cow position: | chr12:6666723-6666557 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 361-526 |
| Cow position: | chr12:22048086-22047907 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 361-528 |
| Cow position: | chr12:583342-583524 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 177 |
| Conread position: | 361-529 |
| Cow position: | chr12:41159743-41159570 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 361-531 |
| Cow position: | chr12:41684666-41684487 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 21, 91 |
| Conread position: | 361-532 |
| Cow position: | chr12:27176800-27176622 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 361-532 |
| Cow position: | chr12:27192204-27192382 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 361-535 |
| Cow position: | chr12:22859612-22859439 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 361-542 |
| Cow position: | chr12:20356649-20356838 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 361-555 |
| Cow position: | chr12:10942456-10942245 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 362-502 |
| Cow position: | chr12:13995633-13995787 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 362-514 |
| Cow position: | chr12:42562059-42561900 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 362-515 |
| Cow position: | chr12:10895393-10895555 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 362-521 |
| Cow position: | chr12:9130064-9129901 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 362-521 |
| Cow position: | chr12:23446877-23446712 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 362-521 |
| Cow position: | chr12:27563218-27563385 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 362-521 |
| Cow position: | chr12:42286125-42285962 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 52 |
| Conread position: | 362-522 |
| Cow position: | chr12:25417417-25417579 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 362-526 |
| Cow position: | chr12:15050464-15050635 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 364-515 |
| Cow position: | chr12:37123793-37123648 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 122, 25 |
| Conread position: | 364-521 |
| Cow position: | chr12:32753663-32753505 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 36 |
| Conread position: | 364-532 |
| Cow position: | chr12:43855049-43854869 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 87 |
| Conread position: | 366-508 |
| Cow position: | chr12:17744708-17744859 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 366-522 |
| Cow position: | chr12:33851513-33851348 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 366-527 |
| Cow position: | chr12:26147011-26147185 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 366-534 |
| Cow position: | chr12:7299314-7299480 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 366-555 |
| Cow position: | chr12:40157871-40158064 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 85 |
| Conread position: | 368-521 |
| Cow position: | chr12:9914936-9914781 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 390-520 |
| Cow position: | chr12:11109878-11109747 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 393-522 |
| Cow position: | chr12:25355636-25355765 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 46 |
| Conread position: | 401-490 |
| Cow position: | chr12:25299471-25299382 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 79 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-500 |
| Cow position: | chr12:27663881-27663980 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 401-516 |
| Cow position: | chr12:35124001-35123886 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-517 |
| Cow position: | chr12:16386346-16386461 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 401-520 |
| Cow position: | chr12:21780273-21780155 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 401-520 |
| Cow position: | chr12:26749840-26749959 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-521 |
| Cow position: | chr12:26868702-26868821 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-521 |
| Cow position: | chr12:30042837-30042717 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-521 |
| Cow position: | chr12:31269269-31269146 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 401-521 |
| Cow position: | chr12:43619393-43619272 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 401-522 |
| Cow position: | chr12:9514473-9514352 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 43 |
| Conread position: | 401-526 |
| Cow position: | chr12:12699529-12699654 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-527 |
| Cow position: | chr12:13988483-13988354 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 49 |
| Conread position: | 401-531 |
| Cow position: | chr12:10834022-10834148 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 401-533 |
| Cow position: | chr12:11230347-11230214 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 401-548 |
| Cow position: | chr12:22752740-22752590 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 27, 126 |
| Conread position: | 401-552 |
| Cow position: | chr12:29675030-29675181 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 402-519 |
| Cow position: | chr12:12532381-12532497 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 402-521 |
| Cow position: | chr12:7457434-7457553 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 402-528 |
| Cow position: | chr12:42254777-42254653 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 402-539 |
| Cow position: | chr12:25814264-25814124 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 412-521 |
| Cow position: | chr12:22323173-22323282 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 415-521 |
| Cow position: | chr12:7920338-7920234 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 14 |
Show alignments to all cow chromosomes.