Cow genome map

Conread name: mE4-MI-P-E4-abp-f-06-1-UM.s1

Conread position: 312-521
Cow position: chr19:52356488-52356271 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 44

Conread position: 337-521
Cow position: chr19:1897749-1897933 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 141
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 44, 23

Conread position: 339-526
Cow position: chr19:52750546-52750743 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 60

Conread position: 340-521
Cow position: chr19:39587044-39587225 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 99

Conread position: 341-521
Cow position: chr19:2137619-2137806 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 110

Conread position: 343-511
Cow position: chr19:30384888-30385064 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 14, 109

Conread position: 343-533
Cow position: chr19:2068471-2068275 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 109

Conread position: 344-505
Cow position: chr19:39378093-39378256 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 37, 22

Conread position: 344-519
Cow position: chr19:14588611-14588426 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 37, 105

Conread position: 344-521
Cow position: chr19:5521951-5522136 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 143
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 15, 108

Conread position: 344-521
Cow position: chr19:40051192-40051374 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 37, 23

Conread position: 344-526
Cow position: chr19:6687802-6687989 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 60

Conread position: 344-526
Cow position: chr19:12160336-12160518 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 77

Conread position: 345-512
Cow position: chr19:3772425-3772588 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 47

Conread position: 345-525
Cow position: chr19:41850036-41850219 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 56

Conread position: 345-533
Cow position: chr19:2220866-2221067 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 158
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 114

Conread position: 351-526
Cow position: chr19:729549-729732 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 30, 102

Conread position: 351-526
Cow position: chr19:11866109-11866299 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 352-521
Cow position: chr19:38411068-38410885 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 104

Conread position: 352-521
Cow position: chr19:39795387-39795209 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 352-525
Cow position: chr19:13121088-13121269 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 99

Conread position: 352-526
Cow position: chr19:7594958-7595133 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 91

Conread position: 353-519
Cow position: chr19:12698514-12698340 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 94

Conread position: 354-521
Cow position: chr19:47859118-47859296 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 120

Conread position: 354-527
Cow position: chr19:24068085-24068270 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 53

Conread position: 356-506
Cow position: chr19:31319353-31319195 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 126

Conread position: 356-519
Cow position: chr19:49683670-49683844 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 99

Conread position: 356-521
Cow position: chr19:4586355-4586528 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 356-521
Cow position: chr19:41946915-41946735 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 356-522
Cow position: chr19:23304295-23304472 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 356-526
Cow position: chr19:23831543-23831357 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 25, 0

Conread position: 356-526
Cow position: chr19:34166562-34166381 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 25, 86

Conread position: 356-533
Cow position: chr19:41695479-41695653 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 65

Conread position: 360-495
Cow position: chr19:25582492-25582350 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 92

Conread position: 360-520
Cow position: chr19:18500134-18500301 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 21, 0

Conread position: 361-515
Cow position: chr19:43431133-43431302 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 20, 105

Conread position: 361-516
Cow position: chr19:55357235-55357079 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 48

Conread position: 361-521
Cow position: chr19:268537-268373 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 20, 89

Conread position: 361-521
Cow position: chr19:20378846-20379013 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 90

Conread position: 361-521
Cow position: chr19:39758710-39758542 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 20, 93

Conread position: 361-521
Cow position: chr19:55247822-55247650 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 361-522
Cow position: chr19:25382493-25382669 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 99

Conread position: 361-527
Cow position: chr19:30471168-30471342 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 20, 0

Conread position: 361-532
Cow position: chr19:49290269-49290449 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 176

Conread position: 361-533
Cow position: chr19:14253824-14253640 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 20, 97

Conread position: 361-535
Cow position: chr19:12747588-12747772 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 20, 180

Conread position: 361-537
Cow position: chr19:42776623-42776433 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 90

Conread position: 361-545
Cow position: chr19:1791505-1791702 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 178

Conread position: 361-554
Cow position: chr19:41347557-41347364 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 33

Conread position: 362-515
Cow position: chr19:43413967-43413808 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 362-521
Cow position: chr19:17355047-17354877 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 90

Conread position: 362-521
Cow position: chr19:22871068-22871236 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 362-521
Cow position: chr19:36845433-36845269 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 137
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 19, 87

Conread position: 362-521
Cow position: chr19:41188024-41187858 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 19, 45

Conread position: 362-533
Cow position: chr19:20622845-20622662 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 19, 95

Conread position: 363-520
Cow position: chr19:22414080-22414246 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 90

Conread position: 363-521
Cow position: chr19:8185392-8185222 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 84

Conread position: 363-532
Cow position: chr19:38111655-38111472 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 75

Conread position: 363-533
Cow position: chr19:8869762-8869587 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 165

Conread position: 363-553
Cow position: chr19:4537080-4537277 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 18, 89

Conread position: 365-521
Cow position: chr19:39648905-39649056 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 42

Conread position: 366-515
Cow position: chr19:12240290-12240133 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 366-554
Cow position: chr19:38597251-38597057 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 145
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 85

Conread position: 367-521
Cow position: chr19:39254266-39254426 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 27

Conread position: 371-521
Cow position: chr19:25526458-25526303 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 10, 78

Conread position: 374-533
Cow position: chr19:25410678-25410839 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 64

Conread position: 386-521
Cow position: chr19:52568318-52568456 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 401-511
Cow position: chr19:23416744-23416854 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 85, 44

Conread position: 401-519
Cow position: chr19:29139341-29139223 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 85, 43

Conread position: 401-520
Cow position: chr19:34819049-34819166 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 29

Conread position: 401-521
Cow position: chr19:5912821-5912941 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 85, 43

Conread position: 401-521
Cow position: chr19:12760964-12761084 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 38

Conread position: 401-521
Cow position: chr19:30227659-30227539 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 43

Conread position: 401-521
Cow position: chr19:35444368-35444488 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 45

Conread position: 401-521
Cow position: chr19:53371759-53371879 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 85, 43

Conread position: 401-521
Cow position: chr19:55590371-55590251 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 44

Conread position: 401-522
Cow position: chr19:4339494-4339623 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 401-522
Cow position: chr19:31652697-31652576 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 85, 43

Conread position: 401-522
Cow position: chr19:33307720-33307599 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 44

Conread position: 401-522
Cow position: chr19:42868154-42868033 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 44

Conread position: 401-522
Cow position: chr19:54157599-54157719 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 43

Conread position: 401-525
Cow position: chr19:39585968-39586095 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 0

Conread position: 401-525
Cow position: chr19:51294149-51294272 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 119, 44

Conread position: 401-526
Cow position: chr19:21817102-21816977 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 105
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 43

Conread position: 401-546
Cow position: chr19:45923344-45923200 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 83, 46

Conread position: 401-553
Cow position: chr19:38021578-38021430 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 134, 43

Conread position: 401-554
Cow position: chr19:11172965-11172811 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 134

Conread position: 401-555
Cow position: chr19:33610026-33609874 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 33

Conread position: 405-515
Cow position: chr19:43985660-43985770 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 39

Conread position: 415-512
Cow position: chr19:54919722-54919819 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 69, 29

Conread position: 415-520
Cow position: chr19:54915569-54915672 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 14

Conread position: 416-525
Cow position: chr19:2042208-2042100 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 70, 14

Conread position: 418-521
Cow position: chr19:31998151-31998254 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 26

Conread position: 421-521
Cow position: chr19:38630776-38630876 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 24

Conread position: 430-521
Cow position: chr19:33626251-33626342 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 56, 15

Show alignments to all cow chromosomes.