Cow genome map
| Conread name: | mE4-MI-P-E4-abp-f-06-1-UM.s1 |
| Conread position: | 309-518 |
| Cow position: | chr21:24757252-24757037 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 310-526 |
| Cow position: | chr21:21907123-21907345 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 330-521 |
| Cow position: | chr21:17184213-17184011 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 333-521 |
| Cow position: | chr21:3178137-3177941 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 21, 9 |
| Conread position: | 333-521 |
| Cow position: | chr21:6998241-6998041 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 110 |
| Conread position: | 344-498 |
| Cow position: | chr21:30359069-30359228 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 63 |
| Conread position: | 344-521 |
| Cow position: | chr21:15271158-15271343 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 97 |
| Conread position: | 344-521 |
| Cow position: | chr21:27409458-27409638 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 344-522 |
| Cow position: | chr21:38482663-38482472 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 90 |
| Conread position: | 344-552 |
| Cow position: | chr21:10004602-10004822 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 344-555 |
| Cow position: | chr21:40475782-40475559 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 346-521 |
| Cow position: | chr21:40266403-40266215 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 61 |
| Conread position: | 350-521 |
| Cow position: | chr21:4281610-4281781 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 350-521 |
| Cow position: | chr21:44251566-44251749 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 36, 106 |
| Conread position: | 350-547 |
| Cow position: | chr21:30938390-30938595 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 351-516 |
| Cow position: | chr21:6154074-6153899 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 351-521 |
| Cow position: | chr21:32339471-32339646 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 56 |
| Conread position: | 351-533 |
| Cow position: | chr21:18568363-18568556 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 106 |
| Conread position: | 352-526 |
| Cow position: | chr21:27521069-27521249 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 159 |
| Conread position: | 356-521 |
| Cow position: | chr21:28244736-28244564 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 356-521 |
| Cow position: | chr21:37928920-37928743 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 100 |
| Conread position: | 356-526 |
| Cow position: | chr21:27677752-27677569 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 26, 102 |
| Conread position: | 356-528 |
| Cow position: | chr21:6292018-6291834 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 25, 102 |
| Conread position: | 356-539 |
| Cow position: | chr21:18495484-18495298 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 356-544 |
| Cow position: | chr21:37360970-37361172 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 179 |
| Conread position: | 359-521 |
| Cow position: | chr21:438824-438656 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 361-512 |
| Cow position: | chr21:15305031-15305196 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 46 |
| Conread position: | 361-519 |
| Cow position: | chr21:38720513-38720346 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 104 |
| Conread position: | 361-521 |
| Cow position: | chr21:745434-745269 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 90 |
| Conread position: | 361-521 |
| Cow position: | chr21:3135604-3135775 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 361-521 |
| Cow position: | chr21:13225981-13225809 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 361-521 |
| Cow position: | chr21:14452497-14452328 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 361-521 |
| Cow position: | chr21:42905138-42905304 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 30 |
| Conread position: | 361-522 |
| Cow position: | chr21:38918466-38918291 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 361-525 |
| Cow position: | chr21:45970915-45971084 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 361-526 |
| Cow position: | chr21:13589026-13588849 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 97 |
| Conread position: | 361-526 |
| Cow position: | chr21:31658890-31659062 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 361-532 |
| Cow position: | chr21:46612540-46612717 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 361-533 |
| Cow position: | chr21:37706148-37706332 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 361-538 |
| Cow position: | chr21:43693081-43692893 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 361-539 |
| Cow position: | chr21:44724112-44724292 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 361-555 |
| Cow position: | chr21:5427191-5427000 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 362-502 |
| Cow position: | chr21:38943345-38943495 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 362-521 |
| Cow position: | chr21:13134860-13134695 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 362-521 |
| Cow position: | chr21:16797115-16796945 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 362-521 |
| Cow position: | chr21:20153220-20153050 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 362-521 |
| Cow position: | chr21:23568488-23568322 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 362-533 |
| Cow position: | chr21:17983234-17983061 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 362-541 |
| Cow position: | chr21:28882446-28882256 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 362-555 |
| Cow position: | chr21:20213508-20213717 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 19, 176 |
| Conread position: | 363-521 |
| Cow position: | chr21:48482268-48482436 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 366-521 |
| Cow position: | chr21:868660-868830 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 366-534 |
| Cow position: | chr21:31159645-31159477 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 367-544 |
| Cow position: | chr21:21169250-21169424 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 368-517 |
| Cow position: | chr21:32536648-32536494 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 82 |
| Conread position: | 368-521 |
| Cow position: | chr21:20160935-20160770 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 370-533 |
| Cow position: | chr21:42007213-42007379 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 373-521 |
| Cow position: | chr21:15584171-15584325 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 383-521 |
| Cow position: | chr21:28924340-28924203 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 400-520 |
| Cow position: | chr21:8545808-8545928 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 400-521 |
| Cow position: | chr21:47259-47134 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 401-513 |
| Cow position: | chr21:31258680-31258568 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-520 |
| Cow position: | chr21:5214563-5214443 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 401-521 |
| Cow position: | chr21:7377712-7377832 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 37 |
| Conread position: | 401-521 |
| Cow position: | chr21:8430886-8431006 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 401-521 |
| Cow position: | chr21:11353274-11353154 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 401-521 |
| Cow position: | chr21:17193537-17193657 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 401-521 |
| Cow position: | chr21:23535923-23535803 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 401-521 |
| Cow position: | chr21:26018592-26018473 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 401-521 |
| Cow position: | chr21:30231485-30231600 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-521 |
| Cow position: | chr21:39319196-39319316 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-521 |
| Cow position: | chr21:41621339-41621219 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 401-522 |
| Cow position: | chr21:48205007-48205128 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 401-533 |
| Cow position: | chr21:4108988-4108858 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 402-521 |
| Cow position: | chr21:42017389-42017509 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 402-526 |
| Cow position: | chr21:29418781-29418657 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 403-521 |
| Cow position: | chr21:46809554-46809672 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 42 |
| Conread position: | 404-520 |
| Cow position: | chr21:10410433-10410319 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 411-521 |
| Cow position: | chr21:43265187-43265301 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 415-521 |
| Cow position: | chr21:33919-33813 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 418-529 |
| Cow position: | chr21:48478703-48478812 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 438-555 |
| Cow position: | chr21:6736011-6736129 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 85 |
| Conread position: | 439-536 |
| Cow position: | chr21:27341418-27341518 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
Show alignments to all cow chromosomes.