Cow genome map
| Conread name: | mE4-MI-P-E4-abp-f-06-1-UM.s1 |
| Conread position: | 308-528 |
| Cow position: | chr29:30441180-30440959 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 319-509 |
| Cow position: | chr29:41094359-41094157 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 24 |
| Conread position: | 332-515 |
| Cow position: | chr29:38857994-38858179 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 333-521 |
| Cow position: | chr29:16290950-16290754 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 334-526 |
| Cow position: | chr29:4085521-4085332 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 342-519 |
| Cow position: | chr29:17297353-17297166 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 344-515 |
| Cow position: | chr29:16735443-16735258 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 344-521 |
| Cow position: | chr29:17222625-17222441 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 344-521 |
| Cow position: | chr29:23874678-23874488 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 37, 113 |
| Conread position: | 344-521 |
| Cow position: | chr29:29973809-29973987 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 344-521 |
| Cow position: | chr29:35084010-35084194 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 345-529 |
| Cow position: | chr29:43088518-43088327 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 346-521 |
| Cow position: | chr29:4423237-4423411 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 350-521 |
| Cow position: | chr29:32894467-32894291 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 351-521 |
| Cow position: | chr29:31982032-31981859 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 352-519 |
| Cow position: | chr29:35292294-35292122 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 352-521 |
| Cow position: | chr29:26211261-26211080 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 100 |
| Conread position: | 354-521 |
| Cow position: | chr29:19420414-19420585 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 354-525 |
| Cow position: | chr29:109876-109712 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 37, 68 |
| Conread position: | 356-514 |
| Cow position: | chr29:30294667-30294837 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 356-520 |
| Cow position: | chr29:3826170-3826001 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 356-522 |
| Cow position: | chr29:34773544-34773710 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 356-526 |
| Cow position: | chr29:9078326-9078507 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 356-533 |
| Cow position: | chr29:37618513-37618322 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 102 |
| Conread position: | 360-532 |
| Cow position: | chr29:28979316-28979487 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 126, 36 |
| Conread position: | 360-533 |
| Cow position: | chr29:32655894-32656077 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 361-512 |
| Cow position: | chr29:23678900-23678746 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 73 |
| Conread position: | 361-512 |
| Cow position: | chr29:28420956-28420792 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 361-515 |
| Cow position: | chr29:4648013-4648175 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 361-515 |
| Cow position: | chr29:20167622-20167458 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 361-520 |
| Cow position: | chr29:24605095-24604925 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 361-521 |
| Cow position: | chr29:2056259-2056089 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 361-521 |
| Cow position: | chr29:11894899-11894726 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 361-521 |
| Cow position: | chr29:21196453-21196621 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 92 |
| Conread position: | 361-521 |
| Cow position: | chr29:35259180-35259013 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 361-533 |
| Cow position: | chr29:3538486-3538659 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 46 |
| Conread position: | 361-533 |
| Cow position: | chr29:18449939-18450121 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 172 |
| Conread position: | 361-555 |
| Cow position: | chr29:34359625-34359826 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 362-520 |
| Cow position: | chr29:629735-629567 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 362-520 |
| Cow position: | chr29:8605740-8605906 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 84 |
| Conread position: | 362-521 |
| Cow position: | chr29:5520286-5520457 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 362-525 |
| Cow position: | chr29:28775278-28775439 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 362-533 |
| Cow position: | chr29:19187224-19187043 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 173 |
| Conread position: | 363-521 |
| Cow position: | chr29:5046850-5046681 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 363-521 |
| Cow position: | chr29:27911774-27911619 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 363-526 |
| Cow position: | chr29:29057357-29057198 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 363-551 |
| Cow position: | chr29:4441008-4441207 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 364-521 |
| Cow position: | chr29:34745465-34745630 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 365-521 |
| Cow position: | chr29:3293138-3292976 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 366-521 |
| Cow position: | chr29:31934570-31934407 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 370-521 |
| Cow position: | chr29:21443151-21443310 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 401-515 |
| Cow position: | chr29:2414604-2414718 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-515 |
| Cow position: | chr29:4484243-4484130 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 24 |
| Conread position: | 401-515 |
| Cow position: | chr29:23142186-23142300 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 401-519 |
| Cow position: | chr29:7966391-7966276 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 401-519 |
| Cow position: | chr29:38732301-38732183 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-520 |
| Cow position: | chr29:24187917-24188036 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 401-520 |
| Cow position: | chr29:41530997-41530879 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 401-521 |
| Cow position: | chr29:8163681-8163801 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-521 |
| Cow position: | chr29:16200330-16200450 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-522 |
| Cow position: | chr29:32656582-32656460 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 401-527 |
| Cow position: | chr29:18878333-18878460 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 401-528 |
| Cow position: | chr29:15947315-15947189 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 43 |
| Conread position: | 401-529 |
| Cow position: | chr29:38582116-38581987 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 401-532 |
| Cow position: | chr29:8669501-8669377 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 401-532 |
| Cow position: | chr29:12025330-12025456 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 401-534 |
| Cow position: | chr29:22019041-22019172 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 401-548 |
| Cow position: | chr29:22577032-22577177 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 402-521 |
| Cow position: | chr29:11081249-11081368 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 402-521 |
| Cow position: | chr29:26017355-26017474 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 43 |
| Conread position: | 408-526 |
| Cow position: | chr29:25333318-25333440 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 412-521 |
| Cow position: | chr29:34675872-34675981 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 414-521 |
| Cow position: | chr29:27926908-27926802 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 415-520 |
| Cow position: | chr29:40298888-40298991 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 415-521 |
| Cow position: | chr29:24051248-24051353 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 417-532 |
| Cow position: | chr29:40097094-40096979 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 27 |
Show alignments to all cow chromosomes.