Cow genome map

Conread name: mE4-MI-P-E4-adc-g-11-1-UM.s1

Conread position: 6-283
Cow position: chr1:5503724-5503445 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 202
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 74, 28

Conread position: 6-283
Cow position: chr1:62242892-62243172 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 32

Conread position: 6-283
Cow position: chr1:91891360-91891638 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 60, 33

Conread position: 7-283
Cow position: chr1:81862228-81862505 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 168, 21

Conread position: 11-283
Cow position: chr1:72185126-72185399 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 166, 23

Conread position: 12-274
Cow position: chr1:34694439-34694178 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 198
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 165, 16

Conread position: 12-277
Cow position: chr1:81778199-81777933 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 54, 26

Conread position: 12-278
Cow position: chr1:67910301-67910034 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 5, 17

Conread position: 12-281
Cow position: chr1:1828557-1828825 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 165, 16

Conread position: 12-281
Cow position: chr1:12060454-12060723 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 198
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 167, 22

Conread position: 12-281
Cow position: chr1:52357506-52357776 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 22

Conread position: 12-282
Cow position: chr1:32566178-32566442 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 133, 23

Conread position: 12-283
Cow position: chr1:8826807-8826535 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 165, 8

Conread position: 12-283
Cow position: chr1:9378765-9379036 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 164, 23

Conread position: 12-283
Cow position: chr1:26517136-26517408 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 164, 23

Conread position: 12-283
Cow position: chr1:28874821-28874548 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 22

Conread position: 12-283
Cow position: chr1:30074623-30074352 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 165, 26

Conread position: 12-283
Cow position: chr1:42738182-42737914 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 204
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 165, 23

Conread position: 12-283
Cow position: chr1:48248656-48248393 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 188
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 23, 0

Conread position: 12-283
Cow position: chr1:55778339-55778069 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 193
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 165, 23

Conread position: 12-283
Cow position: chr1:56142589-56142863 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 165, 26

Conread position: 12-283
Cow position: chr1:56724897-56724625 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 164, 22

Conread position: 12-283
Cow position: chr1:62804423-62804694 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 165, 23

Conread position: 12-283
Cow position: chr1:68605789-68606067 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 194
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 13, 0

Conread position: 12-283
Cow position: chr1:69404753-69404485 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 165, 22

Conread position: 12-283
Cow position: chr1:73069307-73069581 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 165, 23

Conread position: 12-283
Cow position: chr1:74284926-74285196 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 201
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 165, 23

Conread position: 12-283
Cow position: chr1:79455200-79455472 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 165, 23

Conread position: 12-283
Cow position: chr1:79635246-79635511 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 201
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 163, 16

Conread position: 12-283
Cow position: chr1:102433280-102433559 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 204
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 27, 260

Conread position: 13-283
Cow position: chr1:88132530-88132257 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 164, 25

Conread position: 16-283
Cow position: chr1:24653017-24652747 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 199
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 159, 216

Conread position: 20-283
Cow position: chr1:40511274-40511539 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 157, 19

Conread position: 29-283
Cow position: chr1:11859023-11859278 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 147, 230

Conread position: 29-283
Cow position: chr1:69416554-69416800 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 217, 132

Conread position: 30-273
Cow position: chr1:73020197-73020436 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 135, 11

Conread position: 38-281
Cow position: chr1:17940039-17940287 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 139, 0

Conread position: 38-283
Cow position: chr1:3933528-3933776 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 139, 107

Conread position: 38-283
Cow position: chr1:4209939-4209689 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 18, 26

Conread position: 38-283
Cow position: chr1:49972442-49972688 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 139, 223

Conread position: 38-283
Cow position: chr1:56192433-56192682 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 139, 232

Conread position: 38-283
Cow position: chr1:63604040-63604290 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 139, 0

Conread position: 38-283
Cow position: chr1:65388043-65387797 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 138, 220

Conread position: 38-283
Cow position: chr1:72082487-72082245 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 141, 16

Conread position: 38-283
Cow position: chr1:76741504-76741750 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 137, 56

Conread position: 38-283
Cow position: chr1:82922432-82922677 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 182
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 139, 218

Conread position: 38-283
Cow position: chr1:93856243-93855995 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 39-283
Cow position: chr1:33552659-33552410 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 0

Conread position: 39-283
Cow position: chr1:85778725-85778969 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 177
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 138, 196

Conread position: 45-283
Cow position: chr1:29039757-29039517 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 162

Conread position: 46-276
Cow position: chr1:22618948-22619178 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 130, 212

Conread position: 46-283
Cow position: chr1:25551687-25551445 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 133, 0

Conread position: 54-267
Cow position: chr1:77105309-77105521 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 122, 64

Conread position: 57-283
Cow position: chr1:55320371-55320591 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 165
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 121, 0

Conread position: 63-283
Cow position: chr1:31416803-31417027 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 113, 9

Conread position: 69-283
Cow position: chr1:21592289-21592071 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 107, 0

Conread position: 69-283
Cow position: chr1:82654357-82654138 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 107, 0

Conread position: 70-282
Cow position: chr1:29363994-29363777 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 167
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 70-283
Cow position: chr1:9260184-9259966 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:10724278-10724062 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 106, 129

Conread position: 70-283
Cow position: chr1:17011039-17011254 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 109, 128

Conread position: 70-283
Cow position: chr1:17034895-17035113 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:18964670-18964888 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:20830594-20830376 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:33713770-33713552 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 168
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 107, 0

Conread position: 70-283
Cow position: chr1:33852968-33852750 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:39545486-39545268 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:40056803-40056585 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:40575899-40575681 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:40683043-40683261 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 107, 0

Conread position: 70-283
Cow position: chr1:50210143-50210361 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 107, 0

Conread position: 70-283
Cow position: chr1:53200243-53200026 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 162
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 50

Conread position: 70-283
Cow position: chr1:55275332-55275549 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 106, 28

Conread position: 70-283
Cow position: chr1:57423133-57423351 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:67833437-67833653 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 106, 14

Conread position: 70-283
Cow position: chr1:69768279-69768061 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:71561046-71561264 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 165
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:80357471-80357693 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:85793380-85793162 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 106, 0

Conread position: 70-283
Cow position: chr1:91900721-91900502 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 158
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 105, 0

Conread position: 71-283
Cow position: chr1:81288833-81288616 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 105, 0

Conread position: 72-279
Cow position: chr1:25053990-25053779 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 107, 163

Conread position: 72-283
Cow position: chr1:59207382-59207598 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 72-283
Cow position: chr1:67002851-67002639 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 94, 191

Conread position: 72-283
Cow position: chr1:77923405-77923189 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 72-283
Cow position: chr1:82565810-82565594 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 164
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 104, 0

Conread position: 72-283
Cow position: chr1:86546440-86546656 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 161
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 72-283
Cow position: chr1:90607181-90607397 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 166
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 104, 0

Conread position: 79-283
Cow position: chr1:86594804-86595012 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 158
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 97, 172

Conread position: 81-274
Cow position: chr1:99915130-99914931 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 91-283
Cow position: chr1:78923897-78923708 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 79, 140

Conread position: 102-283
Cow position: chr1:20526146-20525960 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 74, 0

Conread position: 102-283
Cow position: chr1:80445818-80445632 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.