Cow genome map
| Conread name: | mE4-MI-P-E4-adc-g-11-1-UM.s1 |
| Conread position: | 4-252 |
| Cow position: | chr11:31863510-31863258 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 7, 42 |
| Conread position: | 5-273 |
| Cow position: | chr11:12356979-12357249 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 172, 29 |
| Conread position: | 6-283 |
| Cow position: | chr11:24394736-24394458 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 173, 33 |
| Conread position: | 8-283 |
| Cow position: | chr11:19101075-19101350 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 169, 27 |
| Conread position: | 12-243 |
| Cow position: | chr11:49552737-49552969 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 12-274 |
| Cow position: | chr11:10883703-10883443 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 12-277 |
| Cow position: | chr11:11590381-11590115 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 162, 22 |
| Conread position: | 12-282 |
| Cow position: | chr11:4026197-4026464 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 12-282 |
| Cow position: | chr11:23249055-23249326 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 44 |
| Conread position: | 12-282 |
| Cow position: | chr11:26548942-26548669 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 165, 8 |
| Conread position: | 12-283 |
| Cow position: | chr11:10848865-10848595 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 12-283 |
| Cow position: | chr11:17118927-17119201 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 12-283 |
| Cow position: | chr11:20732819-20733095 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 163, 28 |
| Conread position: | 12-283 |
| Cow position: | chr11:23881436-23881174 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr11:31754647-31754905 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 12-283 |
| Cow position: | chr11:38834033-38834305 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 165, 22 |
| Conread position: | 12-283 |
| Cow position: | chr11:41169278-41169553 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 27 |
| Conread position: | 12-283 |
| Cow position: | chr11:44581928-44582199 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr11:58135803-58135537 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr11:67451907-67451635 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 12-283 |
| Cow position: | chr11:72309625-72309895 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 12-283 |
| Cow position: | chr11:73134717-73134446 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 155, 22 |
| Conread position: | 12-283 |
| Cow position: | chr11:85392419-85392691 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 22 |
| Conread position: | 14-274 |
| Cow position: | chr11:49038968-49039227 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 164, 21 |
| Conread position: | 16-269 |
| Cow position: | chr11:27657852-27657585 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 98, 254 |
| Conread position: | 16-279 |
| Cow position: | chr11:26784666-26784403 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 16-283 |
| Cow position: | chr11:53430624-53430888 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 161, 21 |
| Conread position: | 26-281 |
| Cow position: | chr11:35894501-35894758 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 146, 223 |
| Conread position: | 37-274 |
| Cow position: | chr11:26069648-26069887 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 37-283 |
| Cow position: | chr11:30122459-30122702 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 139, 33 |
| Conread position: | 37-283 |
| Cow position: | chr11:47758884-47759137 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 119, 47 |
| Conread position: | 38-274 |
| Cow position: | chr11:23126276-23126506 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 139, 55 |
| Conread position: | 38-283 |
| Cow position: | chr11:9155764-9156008 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 41-283 |
| Cow position: | chr11:10056889-10056646 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 183 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 135, 191 |
| Conread position: | 63-283 |
| Cow position: | chr11:59628224-59628440 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 69-281 |
| Cow position: | chr11:15986604-15986396 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 107, 43 |
| Conread position: | 70-267 |
| Cow position: | chr11:86876523-86876725 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-276 |
| Cow position: | chr11:41234375-41234164 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:3494350-3494132 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:9733322-9733534 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 105, 50 |
| Conread position: | 70-283 |
| Cow position: | chr11:17106321-17106539 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:17547518-17547306 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 106, 190 |
| Conread position: | 70-283 |
| Cow position: | chr11:19062716-19062934 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:28228407-28228625 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 106, 202 |
| Conread position: | 70-283 |
| Cow position: | chr11:30253586-30253372 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 196 |
| Conread position: | 70-283 |
| Cow position: | chr11:31927516-31927298 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 150 |
| Conread position: | 70-283 |
| Cow position: | chr11:32453192-32452971 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:44517505-44517721 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 106, 147 |
| Conread position: | 70-283 |
| Cow position: | chr11:47738187-47738397 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 106, 62 |
| Conread position: | 70-283 |
| Cow position: | chr11:50836307-50836525 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:52420752-52420545 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 110 |
| Conread position: | 70-283 |
| Cow position: | chr11:53285812-53286026 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 107, 149 |
| Conread position: | 70-283 |
| Cow position: | chr11:57626691-57626909 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 70-283 |
| Cow position: | chr11:63653973-63654191 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr11:67845211-67845428 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 35 |
| Conread position: | 75-283 |
| Cow position: | chr11:43513269-43513481 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 147 |
| Conread position: | 87-283 |
| Cow position: | chr11:40774671-40774858 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 100-281 |
| Cow position: | chr11:1494713-1494889 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 102-283 |
| Cow position: | chr11:26123598-26123784 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 111-283 |
| Cow position: | chr11:9215189-9215366 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 122-283 |
| Cow position: | chr11:29612684-29612852 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 128-283 |
| Cow position: | chr11:25865542-25865696 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 49, 108 |
Show alignments to all cow chromosomes.