Cow genome map
| Conread name: | mE4-MI-P-E4-adc-g-11-1-UM.s1 |
| Conread position: | 5-274 |
| Cow position: | chr13:6666648-6666920 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 171, 33 |
| Conread position: | 12-245 |
| Cow position: | chr13:9298928-9298695 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-274 |
| Cow position: | chr13:47575574-47575311 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 12-277 |
| Cow position: | chr13:11793596-11793869 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 12-277 |
| Cow position: | chr13:48359108-48358846 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 164, 16 |
| Conread position: | 12-283 |
| Cow position: | chr13:4942867-4942595 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 12-283 |
| Cow position: | chr13:13326408-13326139 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 164, 25 |
| Conread position: | 12-283 |
| Cow position: | chr13:33334839-33335100 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 175, 10 |
| Conread position: | 12-283 |
| Cow position: | chr13:35758762-35758495 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 165, 24 |
| Conread position: | 12-283 |
| Cow position: | chr13:42090211-42090480 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 12-283 |
| Cow position: | chr13:50110940-50110663 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 15-283 |
| Cow position: | chr13:43590794-43590531 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 161, 19 |
| Conread position: | 16-174 |
| Cow position: | chr13:36348658-36348812 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 16-269 |
| Cow position: | chr13:43981607-43981863 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 12 |
| Conread position: | 16-283 |
| Cow position: | chr13:14401630-14401896 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 161, 19 |
| Conread position: | 20-283 |
| Cow position: | chr13:20540780-20541046 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 27-283 |
| Cow position: | chr13:34764375-34764625 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 156, 28 |
| Conread position: | 38-283 |
| Cow position: | chr13:31508367-31508120 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 138, 193 |
| Conread position: | 38-283 |
| Cow position: | chr13:32983884-32984134 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 38-283 |
| Cow position: | chr13:34040874-34041124 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 38-283 |
| Cow position: | chr13:34324118-34324365 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 138, 193 |
| Conread position: | 38-283 |
| Cow position: | chr13:42217222-42217472 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 46-283 |
| Cow position: | chr13:16253059-16253306 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 54-248 |
| Cow position: | chr13:728671-728474 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 55-274 |
| Cow position: | chr13:50661719-50661494 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 10, 88 |
| Conread position: | 70-274 |
| Cow position: | chr13:15449719-15449935 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 43 |
| Conread position: | 70-281 |
| Cow position: | chr13:31732468-31732681 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 197 |
| Conread position: | 70-281 |
| Cow position: | chr13:60424178-60423965 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 141, 110 |
| Conread position: | 70-283 |
| Cow position: | chr13:2387377-2387595 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr13:5500571-5500788 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 208 |
| Conread position: | 70-283 |
| Cow position: | chr13:6358552-6358334 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr13:11388425-11388208 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 106, 134 |
| Conread position: | 70-283 |
| Cow position: | chr13:17309891-17309674 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 106, 165 |
| Conread position: | 70-283 |
| Cow position: | chr13:21697692-21697474 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 70-283 |
| Cow position: | chr13:21838779-21838988 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 106, 164 |
| Conread position: | 70-283 |
| Cow position: | chr13:49975093-49974876 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 106, 35 |
| Conread position: | 70-283 |
| Cow position: | chr13:50192970-50193185 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 70-283 |
| Cow position: | chr13:60468854-60468636 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr13:60648377-60648595 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 72-283 |
| Cow position: | chr13:4485215-4485002 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 72-283 |
| Cow position: | chr13:15543966-15543750 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 72-283 |
| Cow position: | chr13:31610885-31611098 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 105, 160 |
| Conread position: | 75-283 |
| Cow position: | chr13:32923712-32923922 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 95, 187 |
| Conread position: | 79-283 |
| Cow position: | chr13:33524537-33524746 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 80-277 |
| Cow position: | chr13:25693091-25692889 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 97, 5 |
| Conread position: | 91-283 |
| Cow position: | chr13:9046165-9045971 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 105-283 |
| Cow position: | chr13:28860557-28860375 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 163 |
| Conread position: | 110-265 |
| Cow position: | chr13:34908651-34908814 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.