Cow genome map
| Conread name: | mE4-MI-P-E4-adc-g-11-1-UM.s1 |
| Conread position: | 6-283 |
| Cow position: | chr28:1216082-1216356 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 171, 32 |
| Conread position: | 6-283 |
| Cow position: | chr28:32790644-32790916 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 171, 32 |
| Conread position: | 8-283 |
| Cow position: | chr28:12408476-12408750 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 26 |
| Conread position: | 9-283 |
| Cow position: | chr28:2086215-2085940 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 170, 26 |
| Conread position: | 11-243 |
| Cow position: | chr28:21567192-21566960 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 166, 135 |
| Conread position: | 11-279 |
| Cow position: | chr28:18099749-18100016 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 12-274 |
| Cow position: | chr28:7812167-7811895 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 12-283 |
| Cow position: | chr28:699023-698754 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 165, 22 |
| Conread position: | 12-283 |
| Cow position: | chr28:784403-784137 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 165, 8 |
| Conread position: | 12-283 |
| Cow position: | chr28:1385661-1385930 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:1506613-1506341 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:1813187-1813454 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:5939235-5938963 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:7003747-7003473 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 252 |
| Conread position: | 12-283 |
| Cow position: | chr28:8380784-8380512 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:10645691-10645959 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 164, 16 |
| Conread position: | 12-283 |
| Cow position: | chr28:12152073-12151805 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 100, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:14703636-14703908 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 160, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:17390150-17389877 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 12-283 |
| Cow position: | chr28:18518700-18518972 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr28:33638293-33638017 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 26 |
| Conread position: | 15-283 |
| Cow position: | chr28:8719212-8719477 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 162, 23 |
| Conread position: | 16-283 |
| Cow position: | chr28:21361238-21360972 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 160, 29 |
| Conread position: | 16-283 |
| Cow position: | chr28:22259408-22259675 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 29-236 |
| Cow position: | chr28:14193840-14194045 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 108, 13 |
| Conread position: | 36-246 |
| Cow position: | chr28:15574851-15574642 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 37-272 |
| Cow position: | chr28:10495775-10496004 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 37-283 |
| Cow position: | chr28:5766457-5766206 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 38-283 |
| Cow position: | chr28:3190527-3190777 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 38-283 |
| Cow position: | chr28:7742158-7741910 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 129, 227 |
| Conread position: | 38-283 |
| Cow position: | chr28:33254039-33253784 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 40-281 |
| Cow position: | chr28:10580149-10580397 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 41-283 |
| Cow position: | chr28:15034390-15034636 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 136, 13 |
| Conread position: | 46-283 |
| Cow position: | chr28:5749986-5750228 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 181 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 55-279 |
| Cow position: | chr28:6786954-6786737 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 66-283 |
| Cow position: | chr28:22231594-22231818 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 110, 9 |
| Conread position: | 70-283 |
| Cow position: | chr28:483901-484118 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 106, 191 |
| Conread position: | 70-283 |
| Cow position: | chr28:1459788-1459570 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 70-283 |
| Cow position: | chr28:6537117-6537335 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 70-283 |
| Cow position: | chr28:6778248-6778463 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 106, 199 |
| Conread position: | 70-283 |
| Cow position: | chr28:7827673-7827465 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 132, 23 |
| Conread position: | 70-283 |
| Cow position: | chr28:9288640-9288425 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 106, 143 |
| Conread position: | 70-283 |
| Cow position: | chr28:24590549-24590332 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 106, 16 |
| Conread position: | 71-282 |
| Cow position: | chr28:18146054-18146265 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 163, 14 |
| Conread position: | 76-283 |
| Cow position: | chr28:13461658-13461446 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 77-283 |
| Cow position: | chr28:5112438-5112649 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 79-283 |
| Cow position: | chr28:17665629-17665832 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 98, 6 |
| Conread position: | 95-283 |
| Cow position: | chr28:22041617-22041810 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 103-278 |
| Cow position: | chr28:5912609-5912788 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 118-283 |
| Cow position: | chr28:5567769-5567603 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 147 |
Show alignments to all cow chromosomes.