Cow genome map
| Conread name: | mE4-MI-P-E4-adc-g-11-1-UM.s1 |
| Conread position: | 3-283 |
| Cow position: | chr5:987526-987807 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 173, 26 |
| Conread position: | 5-283 |
| Cow position: | chr5:76096594-76096315 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 171, 33 |
| Conread position: | 6-283 |
| Cow position: | chr5:10855277-10855556 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 171, 32 |
| Conread position: | 9-283 |
| Cow position: | chr5:24296146-24295876 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 167, 26 |
| Conread position: | 11-283 |
| Cow position: | chr5:6153364-6153638 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 23 |
| Conread position: | 12-265 |
| Cow position: | chr5:2915967-2915713 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 165, 8 |
| Conread position: | 12-274 |
| Cow position: | chr5:3787470-3787207 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 12-276 |
| Cow position: | chr5:4070749-4070486 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 195 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-276 |
| Cow position: | chr5:45701850-45701578 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 23, 227 |
| Conread position: | 12-281 |
| Cow position: | chr5:46004344-46004606 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 164, 22 |
| Conread position: | 12-281 |
| Cow position: | chr5:55629516-55629257 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 165, 23 |
| Conread position: | 12-283 |
| Cow position: | chr5:3502573-3502847 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 160, 14 |
| Conread position: | 12-283 |
| Cow position: | chr5:3965987-3965710 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 158, 22 |
| Conread position: | 12-283 |
| Cow position: | chr5:10841847-10842120 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 164, 26 |
| Conread position: | 12-283 |
| Cow position: | chr5:10920368-10920100 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 12-283 |
| Cow position: | chr5:23830788-23831060 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 164, 23 |
| Conread position: | 12-283 |
| Cow position: | chr5:30580868-30580605 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 124, 23 |
| Conread position: | 12-283 |
| Cow position: | chr5:31708096-31707824 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 164, 22 |
| Conread position: | 12-283 |
| Cow position: | chr5:37733886-37733610 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 54, 64 |
| Conread position: | 12-283 |
| Cow position: | chr5:40758453-40758187 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 12-283 |
| Cow position: | chr5:47829542-47829816 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 164, 26 |
| Conread position: | 12-283 |
| Cow position: | chr5:49222957-49223231 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 12-283 |
| Cow position: | chr5:57481006-57481279 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 167, 16 |
| Conread position: | 13-281 |
| Cow position: | chr5:48807197-48807470 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 16-247 |
| Cow position: | chr5:23686392-23686616 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 161, 12 |
| Conread position: | 16-279 |
| Cow position: | chr5:7142540-7142799 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 158, 94 |
| Conread position: | 16-283 |
| Cow position: | chr5:53946361-53946093 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 20-218 |
| Cow position: | chr5:12681522-12681725 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 22-282 |
| Cow position: | chr5:73487540-73487805 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 58, 64 |
| Conread position: | 26-283 |
| Cow position: | chr5:40923152-40923385 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 29-175 |
| Cow position: | chr5:3254086-3254234 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 29-281 |
| Cow position: | chr5:34190441-34190179 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 23, 243 |
| Conread position: | 31-283 |
| Cow position: | chr5:46627880-46628120 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 231, 89 |
| Conread position: | 37-283 |
| Cow position: | chr5:41376342-41376593 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 38-253 |
| Cow position: | chr5:29434252-29434463 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 149, 47 |
| Conread position: | 38-273 |
| Cow position: | chr5:35527436-35527200 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 139, 82 |
| Conread position: | 38-282 |
| Cow position: | chr5:31122076-31122325 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 138, 231 |
| Conread position: | 38-283 |
| Cow position: | chr5:7275342-7275101 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 139, 46 |
| Conread position: | 38-283 |
| Cow position: | chr5:59283827-59283577 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 38-283 |
| Cow position: | chr5:64780503-64780754 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 39-283 |
| Cow position: | chr5:26184370-26184122 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 41-274 |
| Cow position: | chr5:61080701-61080941 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 61, 84 |
| Conread position: | 41-283 |
| Cow position: | chr5:306906-307152 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 135, 118 |
| Conread position: | 44-247 |
| Cow position: | chr5:23754977-23755184 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 45-265 |
| Cow position: | chr5:18114062-18114280 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 50 |
| Conread position: | 54-283 |
| Cow position: | chr5:28014524-28014297 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 107, 39 |
| Conread position: | 56-281 |
| Cow position: | chr5:4386719-4386500 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 66-283 |
| Cow position: | chr5:7227331-7227121 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 69-283 |
| Cow position: | chr5:10774783-10775002 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 70-254 |
| Cow position: | chr5:37378605-37378416 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 70-277 |
| Cow position: | chr5:51744754-51744549 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 144, 106 |
| Conread position: | 70-283 |
| Cow position: | chr5:2459461-2459244 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 106, 50 |
| Conread position: | 70-283 |
| Cow position: | chr5:6587109-6587327 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:10813271-10813489 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:12731236-12731453 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 181 |
| Conread position: | 70-283 |
| Cow position: | chr5:18121003-18121221 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:23958851-23959069 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:26077714-26077931 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 106, 181 |
| Conread position: | 70-283 |
| Cow position: | chr5:32774244-32774026 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:35301577-35301359 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:40131123-40131341 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:46777872-46777654 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 70-283 |
| Cow position: | chr5:50871086-50870879 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 106, 97 |
| Conread position: | 71-283 |
| Cow position: | chr5:4684327-4684543 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 71-283 |
| Cow position: | chr5:4756705-4756922 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 72-283 |
| Cow position: | chr5:18559928-18560145 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 90, 201 |
| Conread position: | 72-283 |
| Cow position: | chr5:58197493-58197277 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 75-268 |
| Cow position: | chr5:49757236-49757431 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 90, 70 |
| Conread position: | 82-283 |
| Cow position: | chr5:49520015-49519813 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 95, 189 |
| Conread position: | 90-283 |
| Cow position: | chr5:27907812-27908010 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 98-283 |
| Cow position: | chr5:32952345-32952154 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 72, 135 |
| Conread position: | 120-283 |
| Cow position: | chr5:4017769-4017937 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 130-283 |
| Cow position: | chr5:23236334-23236177 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 46, 139 |
Show alignments to all cow chromosomes.