Cow genome map

Conread name: mE4-MI-P-E4-ahd-g-01-1-UM.s1

Conread position: 1-164
Cow position: chr1:9377250-9377085 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 1-176
Cow position: chr1:100709300-100709478 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 0

Conread position: 1-179
Cow position: chr1:29365635-29365816 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 117, 0

Conread position: 1-190
Cow position: chr1:81860281-81860089 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 68

Conread position: 1-193
Cow position: chr1:18486948-18486754 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 68

Conread position: 1-196
Cow position: chr1:19162197-19162395 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 74, 67

Conread position: 1-197
Cow position: chr1:31106164-31105965 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 68

Conread position: 1-198
Cow position: chr1:34684715-34684912 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 84, 93

Conread position: 1-201
Cow position: chr1:55493835-55493632 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 74, 68

Conread position: 1-206
Cow position: chr1:30103348-30103140 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 74, 68

Conread position: 1-209
Cow position: chr1:21785712-21785921 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 129, 41

Conread position: 1-213
Cow position: chr1:31707711-31707926 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 117, 0

Conread position: 1-221
Cow position: chr1:97624834-97624614 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 5, 97

Conread position: 1-230
Cow position: chr1:25178796-25178564 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 170
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 117, 0

Conread position: 1-236
Cow position: chr1:97285426-97285194 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 175
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 76, 68

Conread position: 1-237
Cow position: chr1:47119186-47119425 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 179
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 74, 68

Conread position: 1-242
Cow position: chr1:8556915-8557158 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 174
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 104, 120

Conread position: 1-250
Cow position: chr1:31191195-31190950 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 116, 214

Conread position: 1-262
Cow position: chr1:48249944-48250210 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 74, 68

Conread position: 1-267
Cow position: chr1:52067856-52068125 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 154
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 68

Conread position: 1-276
Cow position: chr1:84284185-84283907 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 74, 68

Conread position: 1-281
Cow position: chr1:99675107-99674821 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-282
Cow position: chr1:17248434-17248147 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-282
Cow position: chr1:20527389-20527676 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 120

Conread position: 1-282
Cow position: chr1:70038012-70037730 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 117, 148

Conread position: 1-282
Cow position: chr1:78921784-78921497 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-282
Cow position: chr1:91105271-91105554 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 183

Conread position: 1-290
Cow position: chr1:22012731-22012439 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 37

Conread position: 1-290
Cow position: chr1:28812013-28811718 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-290
Cow position: chr1:54933157-54933452 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-294
Cow position: chr1:6241044-6240753 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 83, 61

Conread position: 1-294
Cow position: chr1:48810965-48810665 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 215
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 74, 68

Conread position: 1-295
Cow position: chr1:71559515-71559221 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 211
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 266, 95

Conread position: 1-297
Cow position: chr1:22481431-22481129 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 294

Conread position: 1-297
Cow position: chr1:29428828-29429137 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 62, 58

Conread position: 1-297
Cow position: chr1:66971930-66971628 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 185

Conread position: 1-297
Cow position: chr1:68846481-68846189 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 118

Conread position: 1-297
Cow position: chr1:69406387-69406691 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 1-297
Cow position: chr1:98617901-98618197 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 208
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 17

Conread position: 1-298
Cow position: chr1:8828250-8828550 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 117, 239

Conread position: 1-300
Cow position: chr1:11771561-11771247 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 117, 183

Conread position: 1-301
Cow position: chr1:20378367-20378059 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 1-301
Cow position: chr1:52054049-52054354 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 291

Conread position: 1-302
Cow position: chr1:69671392-69671086 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 289

Conread position: 1-302
Cow position: chr1:73554469-73554775 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 215
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 82, 90

Conread position: 1-303
Cow position: chr1:76878261-76878568 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 153

Conread position: 1-303
Cow position: chr1:89090308-89090000 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 117, 179

Conread position: 1-303
Cow position: chr1:91902248-91902556 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-304
Cow position: chr1:19158228-19157919 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 68

Conread position: 1-304
Cow position: chr1:19775862-19775554 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr1:26536957-26536648 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 221
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr1:31351537-31351231 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 117, 63

Conread position: 1-304
Cow position: chr1:40058334-40058631 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 117, 180

Conread position: 1-304
Cow position: chr1:61331734-61331425 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 1-304
Cow position: chr1:61748221-61747915 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 95

Conread position: 1-304
Cow position: chr1:64717663-64717354 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 1-304
Cow position: chr1:69770048-69770356 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 117, 144

Conread position: 1-304
Cow position: chr1:72590135-72589826 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 220
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr1:75403123-75403432 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 120

Conread position: 1-304
Cow position: chr1:83169671-83169980 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr1:84446908-84447220 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 65, 0

Conread position: 1-304
Cow position: chr1:85795176-85795480 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 100

Conread position: 1-304
Cow position: chr1:89793182-89793491 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 67

Conread position: 1-304
Cow position: chr1:91673461-91673769 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 74, 68

Conread position: 1-304
Cow position: chr1:99118713-99119022 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-305
Cow position: chr1:8602747-8602438 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 82, 71

Conread position: 1-305
Cow position: chr1:14240838-14240529 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 289

Conread position: 1-305
Cow position: chr1:21377329-21377020 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 117, 289

Conread position: 1-305
Cow position: chr1:28876326-28876635 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 292

Conread position: 1-305
Cow position: chr1:72986687-72986994 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 246

Conread position: 1-305
Cow position: chr1:86599786-86599473 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 110, 294

Conread position: 1-305
Cow position: chr1:88179087-88179397 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 109, 290

Conread position: 1-305
Cow position: chr1:90913058-90913367 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 289

Conread position: 1-305
Cow position: chr1:94662882-94663191 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 182

Conread position: 1-305
Cow position: chr1:102814702-102815011 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 104, 120

Conread position: 1-307
Cow position: chr1:20543456-20543768 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 293

Conread position: 1-307
Cow position: chr1:24580635-24580945 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-307
Cow position: chr1:56170189-56170504 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 225
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 68

Conread position: 1-307
Cow position: chr1:66490810-66491123 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 117, 0

Conread position: 1-307
Cow position: chr1:68602401-68602089 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 112

Conread position: 1-307
Cow position: chr1:70535234-70534923 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 132

Conread position: 1-307
Cow position: chr1:72766807-72766493 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 68

Conread position: 1-307
Cow position: chr1:73762316-73762001 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 1-307
Cow position: chr1:99916668-99916980 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-307
Cow position: chr1:100591543-100591228 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 97

Conread position: 1-308
Cow position: chr1:11199401-11199085 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 38

Conread position: 1-308
Cow position: chr1:52371201-52371518 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 58

Conread position: 1-308
Cow position: chr1:52379522-52379839 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 58

Conread position: 1-308
Cow position: chr1:55044033-55043718 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 226
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 117, 161

Conread position: 1-312
Cow position: chr1:13438350-13438665 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 59

Conread position: 1-312
Cow position: chr1:86593075-86592758 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 219
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 117, 0

Conread position: 1-313
Cow position: chr1:32961274-32960952 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 74, 68

Conread position: 1-313
Cow position: chr1:42875427-42875114 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 178

Conread position: 1-313
Cow position: chr1:79553725-79554041 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 222
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 93, 118

Conread position: 1-314
Cow position: chr1:35598581-35598265 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 81

Conread position: 1-314
Cow position: chr1:82909602-82909287 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 223
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 110, 68

Conread position: 1-314
Cow position: chr1:88328251-88327939 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 93

Conread position: 1-316
Cow position: chr1:51444472-51444793 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-316
Cow position: chr1:81302345-81302667 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 224
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 114, 182

Conread position: 1-317
Cow position: chr1:9595716-9595391 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 81

Conread position: 1-317
Cow position: chr1:30372134-30372449 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 229
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 105, 86

Conread position: 1-317
Cow position: chr1:33548172-33547846 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-317
Cow position: chr1:36646222-36645901 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 183

Conread position: 1-317
Cow position: chr1:38711941-38712267 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 1-317
Cow position: chr1:55780100-55780423 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 182

Conread position: 1-317
Cow position: chr1:57363104-57362778 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 1-317
Cow position: chr1:70051468-70051775 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 75, 68

Conread position: 1-317
Cow position: chr1:76618245-76617920 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 1-317
Cow position: chr1:89186229-89185913 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 190, 118

Conread position: 1-317
Cow position: chr1:91890162-91889852 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 226
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 104, 185

Conread position: 1-318
Cow position: chr1:82920910-82920586 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 222
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 267, 0

Conread position: 1-319
Cow position: chr1:57120602-57120286 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 85

Conread position: 1-321
Cow position: chr1:58197209-58196903 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 268, 68

Conread position: 1-328
Cow position: chr1:7738943-7739272 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 147

Conread position: 1-328
Cow position: chr1:16117170-16116837 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-328
Cow position: chr1:31535081-31535415 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 1-328
Cow position: chr1:33854496-33854829 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-328
Cow position: chr1:63341243-63340909 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 230
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 104, 120

Conread position: 1-328
Cow position: chr1:76873111-76873440 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 246

Conread position: 1-328
Cow position: chr1:92921007-92920674 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-329
Cow position: chr1:39235274-39234937 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-329
Cow position: chr1:53649881-53650219 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 1-330
Cow position: chr1:2989712-2990048 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:7162579-7162243 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 120

Conread position: 1-330
Cow position: chr1:7405900-7406236 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:12375075-12374739 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:16819841-16820171 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:20846784-20846448 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:23861480-23861144 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:34533470-34533806 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 234
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:47078951-47078616 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:54472185-54471849 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:56666329-56666665 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:57506020-57506356 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:60251197-60250861 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:61340091-61339755 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:68145742-68145406 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:71794762-71795098 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 233
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:73565249-73564913 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 120

Conread position: 1-330
Cow position: chr1:89431632-89431968 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 1-330
Cow position: chr1:93850530-93850866 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:95456581-95456916 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-330
Cow position: chr1:98354166-98353830 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 235
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 74, 68

Conread position: 1-332
Cow position: chr1:55273813-55273477 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 231
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 117, 289

Conread position: 1-332
Cow position: chr1:93857751-93858085 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 290

Conread position: 1-334
Cow position: chr1:8517841-8517505 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 68

Conread position: 1-334
Cow position: chr1:56205581-56205249 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 104, 120

Conread position: 1-334
Cow position: chr1:89234803-89234468 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 236
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 104, 120

Conread position: 1-334
Cow position: chr1:99117244-99117579 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 185

Conread position: 1-364
Cow position: chr1:85777230-85776859 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 250
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 117, 182

Conread position: 2-231
Cow position: chr1:92008504-92008725 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 107, 0

Conread position: 2-307
Cow position: chr1:51980215-51980517 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 103

Conread position: 2-317
Cow position: chr1:79453530-79453205 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 2-317
Cow position: chr1:102431509-102431188 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 178

Conread position: 3-291
Cow position: chr1:61536486-61536200 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 80, 117

Conread position: 3-312
Cow position: chr1:52434256-52434568 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 235

Conread position: 3-317
Cow position: chr1:52355441-52355118 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 0

Conread position: 4-202
Cow position: chr1:60342288-60342488 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 101, 117

Conread position: 4-282
Cow position: chr1:78587226-78586942 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 71, 65

Conread position: 4-305
Cow position: chr1:10033770-10034065 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 210
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 64

Conread position: 4-317
Cow position: chr1:58340154-58340469 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 264, 101

Conread position: 4-330
Cow position: chr1:46930710-46930389 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 263, 65

Conread position: 4-334
Cow position: chr1:81308593-81308930 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 107, 0

Conread position: 5-195
Cow position: chr1:81357423-81357230 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 113, 0

Conread position: 5-282
Cow position: chr1:10469090-10468809 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 156
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 8, 139

Conread position: 5-282
Cow position: chr1:40681498-40681215 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 113, 0

Conread position: 5-283
Cow position: chr1:93112114-93111833 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 229

Conread position: 5-298
Cow position: chr1:77554765-77554473 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 113, 138

Conread position: 5-304
Cow position: chr1:62927702-62928007 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 216
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 100, 116

Conread position: 5-304
Cow position: chr1:77924714-77925019 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 70, 64

Conread position: 5-316
Cow position: chr1:59483630-59483317 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 288

Conread position: 6-308
Cow position: chr1:18195829-18196141 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 220
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 117, 0

Conread position: 6-314
Cow position: chr1:19145935-19145615 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 112, 159

Conread position: 6-324
Cow position: chr1:11289155-11288829 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 112, 208

Conread position: 11-172
Cow position: chr1:72806628-72806792 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 64, 58

Conread position: 11-232
Cow position: chr1:77866797-77867020 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 37

Conread position: 11-281
Cow position: chr1:73010223-73010499 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-281
Cow position: chr1:85630575-85630851 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-304
Cow position: chr1:18087668-18087967 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-304
Cow position: chr1:69504135-69503836 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-304
Cow position: chr1:73440205-73440504 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-305
Cow position: chr1:80564838-80564539 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-312
Cow position: chr1:101833636-101833939 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 15, 7

Conread position: 11-314
Cow position: chr1:61563276-61563595 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 173, 108

Conread position: 11-330
Cow position: chr1:26588189-26588515 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 64, 58

Conread position: 11-330
Cow position: chr1:86496528-86496854 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 58

Conread position: 11-332
Cow position: chr1:73967751-73968075 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 230
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 64, 58

Conread position: 11-334
Cow position: chr1:18698669-18698995 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 64, 58

Conread position: 11-334
Cow position: chr1:82479222-82479552 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 11-336
Cow position: chr1:13718598-13718272 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 64, 83

Conread position: 11-336
Cow position: chr1:33899784-33900106 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 234
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 107, 58

Conread position: 12-262
Cow position: chr1:37421066-37420825 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 83, 0

Conread position: 12-296
Cow position: chr1:31317234-31316946 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 76

Conread position: 17-346
Cow position: chr1:99572322-99571990 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 52

Conread position: 23-288
Cow position: chr1:26446405-26446677 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 201
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 59, 71

Conread position: 23-297
Cow position: chr1:82518878-82518600 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 202
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 10, 121

Conread position: 24-268
Cow position: chr1:42888230-42887995 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 170, 49

Conread position: 24-293
Cow position: chr1:5163089-5162812 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 25-268
Cow position: chr1:79590104-79590350 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 93, 0

Conread position: 25-297
Cow position: chr1:3263242-3263522 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 199
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 53, 44

Conread position: 25-322
Cow position: chr1:77104097-77103809 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 243, 94

Conread position: 25-330
Cow position: chr1:21535009-21534696 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 50, 44

Show alignments to all cow chromosomes.